Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01005454.1 Hibiscus syriacus cultivar Beakdansim tig00012493_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 374245
ACGTcount: A:0.33, C:0.18, G:0.17, T:0.32
File 1 of 2
Found at i:723 original size:87 final size:88
Alignment explanation
Indices: 568--774 Score: 260
Period size: 87 Copynumber: 2.4 Consensus size: 88
558 CGTCTAAGGG
* * * * * * *
568 TGACACGGCTCCTACGTGATGAGGAAATCTGGTCATCTTTAGGGATGATAACTCGGTTCTACTAA
1 TGACACGGCTCATACGTGATGAAGAGATCTGGCCATCTTAAAGGATGATAACACGGTTCTACTAA
633 TGAGGACGACTGGTTATC-A-GGT
66 TGAGGACGAC-GGTTATCTATGGT
*
655 TGACACGGCTCTTACGTGATGAAGAGATCTGGCCATC-TAAAGG-TGATAACACGGTTCCTACGT
1 TGACACGGCTCATACGTGATGAAGAGATCTGGCCATCTTAAAGGATGATAACACGGTT-CTAC-T
* *
718 GATGAGGACGGCGGTTATCTATGGT
64 AATGAGGACGACGGTTATCTATGGT
*
743 TGACACGGCTCATACGTGATGAAGAGGTCTGG
1 TGACACGGCTCATACGTGATGAAGAGATCTGG
775 TCTGGGATGA
Statistics
Matches: 105, Mismatches: 11, Indels: 7
0.85 0.09 0.06
Matches are distributed among these distances:
85 12 0.11
86 15 0.14
87 45 0.43
88 33 0.31
ACGTcount: A:0.25, C:0.19, G:0.29, T:0.27
Consensus pattern (88 bp):
TGACACGGCTCATACGTGATGAAGAGATCTGGCCATCTTAAAGGATGATAACACGGTTCTACTAA
TGAGGACGACGGTTATCTATGGT
Found at i:1879 original size:15 final size:15
Alignment explanation
Indices: 1845--1878 Score: 52
Period size: 15 Copynumber: 2.3 Consensus size: 15
1835 TTTTTTCTTC
*
1845 TTTTTCATTTTCATT
1 TTTTTCATTTACATT
1860 TTTTTCATTTAC-TT
1 TTTTTCATTTACATT
1874 TTTTT
1 TTTTT
1879 TTTTTTTAAG
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
14 7 0.39
15 11 0.61
ACGTcount: A:0.12, C:0.12, G:0.00, T:0.76
Consensus pattern (15 bp):
TTTTTCATTTACATT
Found at i:15413 original size:3 final size:3
Alignment explanation
Indices: 15400--15457 Score: 59
Period size: 3 Copynumber: 20.0 Consensus size: 3
15390 CAAAAAATTG
* **
15400 TAA TAAA TAA TAA TAA -AA TAA TAA -GA TAA CGA TAA TAA TAA TAA
1 TAA T-AA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
15444 TAA TAA TAA -AA TAA
1 TAA TAA TAA TAA TAA
15458 CGGGAAAAAA
Statistics
Matches: 45, Mismatches: 6, Indels: 8
0.76 0.10 0.14
Matches are distributed among these distances:
2 5 0.11
3 37 0.82
4 3 0.07
ACGTcount: A:0.67, C:0.02, G:0.03, T:0.28
Consensus pattern (3 bp):
TAA
Found at i:15906 original size:20 final size:20
Alignment explanation
Indices: 15881--15925 Score: 83
Period size: 20 Copynumber: 2.3 Consensus size: 20
15871 ATATTTTAAA
15881 TCAAAACCCCTTAATAAAGG
1 TCAAAACCCCTTAATAAAGG
15901 TCAAAACCCCTTAATAAAGG
1 TCAAAACCCCTTAATAAAGG
15921 T-AAAA
1 TCAAAA
15926 ATCACGGACA
Statistics
Matches: 25, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
19 4 0.16
20 21 0.84
ACGTcount: A:0.49, C:0.22, G:0.09, T:0.20
Consensus pattern (20 bp):
TCAAAACCCCTTAATAAAGG
Found at i:17950 original size:2 final size:2
Alignment explanation
Indices: 17943--17983 Score: 82
Period size: 2 Copynumber: 20.5 Consensus size: 2
17933 AAATAACGTA
17943 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
17984 CACATAAATA
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 39 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:25548 original size:30 final size:30
Alignment explanation
Indices: 25492--25593 Score: 84
Period size: 33 Copynumber: 3.3 Consensus size: 30
25482 AAATTAGCAC
* *
25492 AAAA-AATAATTA-ATTAATA-AATTTTAA
1 AAAATAATAATTATATAAATATTATTTTAA
25519 AAAATAATAATTATATAAATATTATTTTAATAA
1 AAAATAATAATTATATAAATATTA-TTT--TAA
* * *
25552 AAAATAATATTTATATAATTATATTAATATAA
1 AAAATAATAATTATATAA--ATATTATTTTAA
*
25584 AATATAATAA
1 AAAATAATAA
25594 CTATTTTTAA
Statistics
Matches: 60, Mismatches: 7, Indels: 11
0.77 0.09 0.14
Matches are distributed among these distances:
27 4 0.07
28 8 0.13
29 6 0.10
30 1 0.02
31 3 0.05
32 11 0.18
33 20 0.33
34 1 0.02
35 6 0.10
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (30 bp):
AAAATAATAATTATATAAATATTATTTTAA
Found at i:25569 original size:18 final size:18
Alignment explanation
Indices: 25516--25569 Score: 60
Period size: 17 Copynumber: 3.2 Consensus size: 18
25506 TAATAAATTT
*
25516 TAAAAAATAATAATTATA
1 TAAAAAATAATATTTATA
* *
25534 T-AAATATTAT-TTTA-A
1 TAAAAAATAATATTTATA
25549 TAAAAAATAATATTTATA
1 TAAAAAATAATATTTATA
25567 TAA
1 TAA
25570 TTATATTAAT
Statistics
Matches: 28, Mismatches: 5, Indels: 6
0.72 0.13 0.15
Matches are distributed among these distances:
15 2 0.07
16 10 0.36
17 11 0.39
18 5 0.18
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (18 bp):
TAAAAAATAATATTTATA
Found at i:25584 original size:32 final size:33
Alignment explanation
Indices: 25516--25593 Score: 97
Period size: 33 Copynumber: 2.4 Consensus size: 33
25506 TAATAAATTT
*
25516 TAAAAAATAATAATTATATAAATATTATTTTAA
1 TAAAAAATAATAATTATATAAATATTATTATAA
* *
25549 TAAAAAATAATATTTATATAATTA-TATTA-ATA
1 TAAAAAATAATAATTATATAAATATTATTATA-A
*
25581 TAAAATATAATAA
1 TAAAAAATAATAA
25594 CTATTTTTAA
Statistics
Matches: 39, Mismatches: 5, Indels: 3
0.83 0.11 0.06
Matches are distributed among these distances:
31 1 0.03
32 16 0.41
33 22 0.56
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (33 bp):
TAAAAAATAATAATTATATAAATATTATTATAA
Found at i:26371 original size:21 final size:21
Alignment explanation
Indices: 26338--26392 Score: 92
Period size: 21 Copynumber: 2.6 Consensus size: 21
26328 GATTTACATA
* *
26338 TTCGCATTCCGATAGTCGAAG
1 TTCGCGTTGCGATAGTCGAAG
26359 TTCGCGTTGCGATAGTCGAAG
1 TTCGCGTTGCGATAGTCGAAG
26380 TTCGCGTTGCGAT
1 TTCGCGTTGCGAT
26393 TTTCCAAATT
Statistics
Matches: 32, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
21 32 1.00
ACGTcount: A:0.18, C:0.22, G:0.29, T:0.31
Consensus pattern (21 bp):
TTCGCGTTGCGATAGTCGAAG
Found at i:26404 original size:21 final size:21
Alignment explanation
Indices: 26337--26424 Score: 81
Period size: 21 Copynumber: 4.3 Consensus size: 21
26327 CGATTTACAT
* * *
26337 ATTCGCATTCCGATAGTCGAA
1 ATTCGCGTTGCGATAGTCCAA
* *
26358 GTTCGCGTTGCGATAGTCGAA
1 ATTCGCGTTGCGATAGTCCAA
* **
26379 GTTCGCGTTGCGATTTTCCAA
1 ATTCGCGTTGCGATAGTCCAA
26400 ATT--CGTTGCGATAGTCCAA
1 ATTCGCGTTGCGATAGTCCAA
*
26419 AATCGC
1 ATTCGC
26425 AACGACTGGT
Statistics
Matches: 55, Mismatches: 10, Indels: 4
0.80 0.14 0.06
Matches are distributed among these distances:
19 16 0.29
21 39 0.71
ACGTcount: A:0.23, C:0.23, G:0.24, T:0.31
Consensus pattern (21 bp):
ATTCGCGTTGCGATAGTCCAA
Found at i:26519 original size:6 final size:6
Alignment explanation
Indices: 26508--26532 Score: 50
Period size: 6 Copynumber: 4.2 Consensus size: 6
26498 GACACGTATT
26508 ACCACG ACCACG ACCACG ACCACG A
1 ACCACG ACCACG ACCACG ACCACG A
26533 GACGAGACGG
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 19 1.00
ACGTcount: A:0.36, C:0.48, G:0.16, T:0.00
Consensus pattern (6 bp):
ACCACG
Found at i:27328 original size:42 final size:42
Alignment explanation
Indices: 27266--27504 Score: 392
Period size: 42 Copynumber: 5.7 Consensus size: 42
27256 TGCGATTTTG
*
27266 GACTATCGCAACGAATTTGGAATAAATCGCAACGCGAACTTC
1 GACTATCGCAACGAACTTGGAATAAATCGCAACGCGAACTTC
27308 GACTATCGCAACGAACTTGGAATAAATCGCAACGCGAACTTC
1 GACTATCGCAACGAACTTGGAATAAATCGCAACGCGAACTTC
* * *
27350 GACTACCGCAACGAATTTGGAATAAATCACAACGCGAACTTC
1 GACTATCGCAACGAACTTGGAATAAATCGCAACGCGAACTTC
*
27392 GACTATCGCAACGAACTTGGAATAAATCGCAACGCAAACTTC
1 GACTATCGCAACGAACTTGGAATAAATCGCAACGCGAACTTC
* *
27434 GACTATCACAACGAACTTGGAATAAATCGCAACGCGAACTTG
1 GACTATCGCAACGAACTTGGAATAAATCGCAACGCGAACTTC
*
27476 GACTATCGCAACGAATTTGG-A-AAATCGCA
1 GACTATCGCAACGAACTTGGAATAAATCGCA
27505 TTGCGATAGT
Statistics
Matches: 184, Mismatches: 13, Indels: 2
0.92 0.07 0.01
Matches are distributed among these distances:
40 8 0.04
41 1 0.01
42 175 0.95
ACGTcount: A:0.37, C:0.25, G:0.18, T:0.20
Consensus pattern (42 bp):
GACTATCGCAACGAACTTGGAATAAATCGCAACGCGAACTTC
Found at i:27529 original size:21 final size:21
Alignment explanation
Indices: 27500--27552 Score: 79
Period size: 21 Copynumber: 2.5 Consensus size: 21
27490 ATTTGGAAAA
*
27500 TCGCATTGCGATAGTCGAAGT
1 TCGCGTTGCGATAGTCGAAGT
* *
27521 TCGCGTTGCGATAGTTGATGT
1 TCGCGTTGCGATAGTCGAAGT
27542 TCGCGTTGCGA
1 TCGCGTTGCGA
27553 ATCTGGAAAC
Statistics
Matches: 29, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
21 29 1.00
ACGTcount: A:0.17, C:0.19, G:0.32, T:0.32
Consensus pattern (21 bp):
TCGCGTTGCGATAGTCGAAGT
Found at i:30552 original size:165 final size:167
Alignment explanation
Indices: 30238--30568 Score: 470
Period size: 165 Copynumber: 2.0 Consensus size: 167
30228 GGTTTGAGCG
* *
30238 GACGACGACGAGGAAGCTAAATATGACGGCGGTGAGGCGAACGGAGGTCTAAGGCGGTCGAAATC
1 GACGACGACGAGGAAGCTAAATAT-A-GGCGGTGAGGCGAACGGAGGTCCAAGACGGTCGAAATC
* * * *
30303 GTCCAAAATTCGAGGCATTGGGGTGGGTTTTCGGTGAAACTTCAAGGGCTAGATTCCGGCTAACG
64 GTCCAAAATCCAAGGCATTGGGGTGGGTTTTCGGCGAAACTTCAAGGGCTAGATTCCGGCGAACG
* *
30368 ACAACGGCTATCCACGAATTATTTTGGGGGTTTTGAGAT
129 ACAACGACTATCAACGAATTATTTTGGGGGTTTTGAGAT
* * *
30407 GACGGCGATGAGGAAGCTAACTAT-GGCGGTGAGGCGAACGGAGGTCCAAGACGGTCGAAATCGT
1 GACGACGACGAGGAAGCTAAATATAGGCGGTGAGGCGAACGGAGGTCCAAGACGGTCGAAATCGT
* *
30471 CCAAAATCCAAGG-AGTT-GGGTGGGTTTTCGGCGAAACTTCAAGGGCTCGATTCCGGCGAACGG
66 CCAAAATCCAAGGCA-TTGGGGTGGGTTTTCGGCGAAACTTCAAGGGCTAGATTCCGGCGAACGA
***
30534 TGTCGACTATCAACGAATTATTTTGGGGGTTTTGA
130 CAACGACTATCAACGAATTATTTTGGGGGTTTTGA
30569 TCATGGCGGC
Statistics
Matches: 145, Mismatches: 16, Indels: 6
0.87 0.10 0.04
Matches are distributed among these distances:
165 73 0.50
166 51 0.35
169 21 0.14
ACGTcount: A:0.26, C:0.18, G:0.34, T:0.22
Consensus pattern (167 bp):
GACGACGACGAGGAAGCTAAATATAGGCGGTGAGGCGAACGGAGGTCCAAGACGGTCGAAATCGT
CCAAAATCCAAGGCATTGGGGTGGGTTTTCGGCGAAACTTCAAGGGCTAGATTCCGGCGAACGAC
AACGACTATCAACGAATTATTTTGGGGGTTTTGAGAT
Found at i:34204 original size:29 final size:29
Alignment explanation
Indices: 34154--34222 Score: 113
Period size: 29 Copynumber: 2.4 Consensus size: 29
34144 GAATATTTAT
*
34154 CGATCTAA-ACCGGTCATATTATATTTCC
1 CGATCTAACACCGGTCAGATTATATTTCC
*
34182 CGATCTAACACCGGTCAGATTATATTTCT
1 CGATCTAACACCGGTCAGATTATATTTCC
34211 CGATCTAACACC
1 CGATCTAACACC
34223 CGTAGCAGTA
Statistics
Matches: 38, Mismatches: 2, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
28 8 0.21
29 30 0.79
ACGTcount: A:0.29, C:0.28, G:0.12, T:0.32
Consensus pattern (29 bp):
CGATCTAACACCGGTCAGATTATATTTCC
Found at i:41664 original size:21 final size:21
Alignment explanation
Indices: 41634--41899 Score: 176
Period size: 21 Copynumber: 13.5 Consensus size: 21
41624 GATTTACATA
*
41634 TTCGCATTGCGATAGTCCAAG
1 TTCGCGTTGCGATAGTCCAAG
*
41655 TTCGCGTTGCGATAGTCGAAG
1 TTCGCGTTGCGATAGTCCAAG
** *
41676 TTCGCGTTGCGATTTTCCAAA
1 TTCGCGTTGCGATAGTCCAAG
*
41697 TT--CGTTGCGATAGTCGAAG
1 TTCGCGTTGCGATAGTCCAAG
* ** *
41716 TTCGCTTTGCGATTTTCCAAA
1 TTCGCGTTGCGATAGTCCAAG
*
41737 TT--CGTTGCGATAGTCGAAG
1 TTCGCGTTGCGATAGTCCAAG
* * *
41756 TTCACGTTGCGATTTATTCCAAA
1 TTCGCGTTGCGA--TAGTCCAAG
*
41779 TT--CGTTGCGATAGTCGAAG
1 TTCGCGTTGCGATAGTCCAAG
*
41798 TTCGCGTTGCGATAGTCGAAG
1 TTCGCGTTGCGATAGTCCAAG
* * *
41819 TTCG-ATT----TATTCCAAA
1 TTCGCGTTGCGATAGTCCAAG
41835 TT--CGTTGCGATAGTCCAAG
1 TTCGCGTTGCGATAGTCCAAG
* * *
41854 TTCG-ATT----TATTCCAAA
1 TTCGCGTTGCGATAGTCCAAG
41870 TT--CGTTGCGATAGTCCAAG
1 TTCGCGTTGCGATAGTCCAAG
41889 TTCGCGTTGCG
1 TTCGCGTTGCG
41900 CTTTATTCCA
Statistics
Matches: 184, Mismatches: 39, Indels: 44
0.69 0.15 0.16
Matches are distributed among these distances:
15 4 0.02
16 17 0.09
19 55 0.30
20 4 0.02
21 96 0.52
23 8 0.04
ACGTcount: A:0.21, C:0.20, G:0.24, T:0.35
Consensus pattern (21 bp):
TTCGCGTTGCGATAGTCCAAG
Found at i:41714 original size:40 final size:40
Alignment explanation
Indices: 41659--41810 Score: 268
Period size: 40 Copynumber: 3.8 Consensus size: 40
41649 TCCAAGTTCG
41659 CGTTGCGATAGTCGAAGTTCGCGTTGCGATTTTCCAAATT
1 CGTTGCGATAGTCGAAGTTCGCGTTGCGATTTTCCAAATT
*
41699 CGTTGCGATAGTCGAAGTTCGCTTTGCGATTTTCCAAATT
1 CGTTGCGATAGTCGAAGTTCGCGTTGCGATTTTCCAAATT
*
41739 CGTTGCGATAGTCGAAGTTCACGTTGCGATTTATTCCAAATT
1 CGTTGCGATAGTCGAAGTTCGCGTTGCGA-TT-TTCCAAATT
41781 CGTTGCGATAGTCGAAGTTCGCGTTGCGAT
1 CGTTGCGATAGTCGAAGTTCGCGTTGCGAT
41811 AGTCGAAGTT
Statistics
Matches: 106, Mismatches: 4, Indels: 3
0.94 0.04 0.03
Matches are distributed among these distances:
40 66 0.62
41 3 0.03
42 37 0.35
ACGTcount: A:0.20, C:0.20, G:0.25, T:0.35
Consensus pattern (40 bp):
CGTTGCGATAGTCGAAGTTCGCGTTGCGATTTTCCAAATT
Found at i:41784 original size:82 final size:80
Alignment explanation
Indices: 41659--41810 Score: 268
Period size: 82 Copynumber: 1.9 Consensus size: 80
41649 TCCAAGTTCG
* *
41659 CGTTGCGATAGTCGAAGTTCGCGTTGCGATTTTCCAAATTCGTTGCGATAGTCGAAGTTCGCTTT
1 CGTTGCGATAGTCGAAGTTCACGTTGCGATTTTCCAAATTCGTTGCGATAGTCGAAGTTCGCGTT
41724 GCGATTTTCCAAATT
66 GCGATTTTCCAAATT
41739 CGTTGCGATAGTCGAAGTTCACGTTGCGATTTATTCCAAATTCGTTGCGATAGTCGAAGTTCGCG
1 CGTTGCGATAGTCGAAGTTCACGTTGCGA-TT-TTCCAAATTCGTTGCGATAGTCGAAGTTCGCG
41804 TTGCGAT
64 TTGCGAT
41811 AGTCGAAGTT
Statistics
Matches: 68, Mismatches: 2, Indels: 2
0.94 0.03 0.03
Matches are distributed among these distances:
80 28 0.41
81 2 0.03
82 38 0.56
ACGTcount: A:0.20, C:0.20, G:0.25, T:0.35
Consensus pattern (80 bp):
CGTTGCGATAGTCGAAGTTCACGTTGCGATTTTCCAAATTCGTTGCGATAGTCGAAGTTCGCGTT
GCGATTTTCCAAATT
Found at i:41848 original size:35 final size:35
Alignment explanation
Indices: 41802--41892 Score: 173
Period size: 35 Copynumber: 2.6 Consensus size: 35
41792 TCGAAGTTCG
*
41802 CGTTGCGATAGTCGAAGTTCGATTTATTCCAAATT
1 CGTTGCGATAGTCCAAGTTCGATTTATTCCAAATT
41837 CGTTGCGATAGTCCAAGTTCGATTTATTCCAAATT
1 CGTTGCGATAGTCCAAGTTCGATTTATTCCAAATT
41872 CGTTGCGATAGTCCAAGTTCG
1 CGTTGCGATAGTCCAAGTTCG
41893 CGTTGCGCTT
Statistics
Matches: 55, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
35 55 1.00
ACGTcount: A:0.24, C:0.20, G:0.21, T:0.35
Consensus pattern (35 bp):
CGTTGCGATAGTCCAAGTTCGATTTATTCCAAATT
Found at i:41930 original size:19 final size:19
Alignment explanation
Indices: 41640--41930 Score: 157
Period size: 21 Copynumber: 14.8 Consensus size: 19
41630 CATATTCGCA
*
41640 TTGCGATAGTCCAAGTTCGCG
1 TTGCGATAGTCCAAATT--CG
* *
41661 TTGCGATAGTCGAAGTTCGCG
1 TTGCGATAGTCCAAATT--CG
**
41682 TTGCGATTTTCCAAATTCG
1 TTGCGATAGTCCAAATTCG
* *
41701 TTGCGATAGTCGAAGTTCG
1 TTGCGATAGTCCAAATTCG
**
41720 CTTTGCGATTTTCCAAATTCG
1 --TTGCGATAGTCCAAATTCG
* *
41741 TTGCGATAGTCGAAGTTCACG
1 TTGCGATAGTCCAAATT--CG
*
41762 TTGCGATTTATTCCAAATTCG
1 TTGCGA--TAGTCCAAATTCG
* *
41783 TTGCGATAGTCGAAGTTCGCG
1 TTGCGATAGTCCAAATT--CG
* *
41804 TTGCGATAGTCGAAGTTCG
1 TTGCGATAGTCCAAATTCG
*
41823 ATT----TATTCCAAATTCG
1 -TTGCGATAGTCCAAATTCG
*
41839 TTGCGATAGTCCAAGTTCG
1 TTGCGATAGTCCAAATTCG
*
41858 ATT----TATTCCAAATTCG
1 -TTGCGATAGTCCAAATTCG
*
41874 TTGCGATAGTCCAAGTTCGCG
1 TTGCGATAGTCCAAATT--CG
* * *
41895 TTGCGCTTTATTCCAAATTTG
1 TTGCG--ATAGTCCAAATTCG
41916 TTGCGATAGTCCAAA
1 TTGCGATAGTCCAAA
41931 ATCGCAACGA
Statistics
Matches: 210, Mismatches: 38, Indels: 46
0.71 0.13 0.16
Matches are distributed among these distances:
15 4 0.02
16 21 0.10
19 68 0.32
20 4 0.02
21 96 0.46
23 17 0.08
ACGTcount: A:0.22, C:0.20, G:0.23, T:0.35
Consensus pattern (19 bp):
TTGCGATAGTCCAAATTCG
Found at i:43244 original size:23 final size:22
Alignment explanation
Indices: 43200--43244 Score: 63
Period size: 22 Copynumber: 2.0 Consensus size: 22
43190 AATGCCAGAG
*
43200 GGGAACCGATACCCCCACAGGA
1 GGGAACCGATACCCCCAAAGGA
*
43222 GGGAACCGATTCCCCCTAAAGGA
1 GGGAACCGATACCCCC-AAAGGA
43245 AAAATGTGAA
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
22 15 0.75
23 5 0.25
ACGTcount: A:0.31, C:0.33, G:0.27, T:0.09
Consensus pattern (22 bp):
GGGAACCGATACCCCCAAAGGA
Found at i:44628 original size:31 final size:31
Alignment explanation
Indices: 44539--44666 Score: 143
Period size: 31 Copynumber: 4.1 Consensus size: 31
44529 AGAGTCGAGG
44539 GTTTACCTATGTTCTACGGAACATATGGACA
1 GTTTACCTATGTTCTACGGAACATATGGACA
* *
44570 GTTTTACCTATG-TCTTTC-GAGATATATGGACA
1 G-TTTACCTATGTTC-TACGGA-ACATATGGACA
* *
44602 GTATACCTATGTTCTAAGGAACATATGGACA
1 GTTTACCTATGTTCTACGGAACATATGGACA
* * * *
44633 GTTTACCTAGGTTCTTCGGGACCTATGGACA
1 GTTTACCTATGTTCTACGGAACATATGGACA
44664 GTT
1 GTT
44667 ACCGAGGATC
Statistics
Matches: 80, Mismatches: 12, Indels: 10
0.78 0.12 0.10
Matches are distributed among these distances:
31 53 0.66
32 27 0.34
ACGTcount: A:0.27, C:0.18, G:0.21, T:0.34
Consensus pattern (31 bp):
GTTTACCTATGTTCTACGGAACATATGGACA
Found at i:44686 original size:30 final size:30
Alignment explanation
Indices: 44625--44721 Score: 113
Period size: 30 Copynumber: 3.2 Consensus size: 30
44615 CTAAGGAACA
* * ***
44625 TATGGACAGTTTACCTAGGTTCTTCGGGACC
1 TATGGACAG-TTACCGAGGATCTTTATGACC
44656 TATGGACAGTTACCGAGGATCTTTATGACC
1 TATGGACAGTTACCGAGGATCTTTATGACC
* *
44686 TCTGGATAGTTACCGAGGATCTTTATGACC
1 TATGGACAGTTACCGAGGATCTTTATGACC
*
44716 TCTGGA
1 TATGGA
44722 TAGGTCCTTC
Statistics
Matches: 59, Mismatches: 7, Indels: 1
0.88 0.10 0.01
Matches are distributed among these distances:
30 50 0.85
31 9 0.15
ACGTcount: A:0.23, C:0.21, G:0.25, T:0.32
Consensus pattern (30 bp):
TATGGACAGTTACCGAGGATCTTTATGACC
Found at i:44722 original size:30 final size:30
Alignment explanation
Indices: 44652--44724 Score: 128
Period size: 30 Copynumber: 2.4 Consensus size: 30
44642 GGTTCTTCGG
* *
44652 GACCTATGGACAGTTACCGAGGATCTTTAT
1 GACCTCTGGATAGTTACCGAGGATCTTTAT
44682 GACCTCTGGATAGTTACCGAGGATCTTTAT
1 GACCTCTGGATAGTTACCGAGGATCTTTAT
44712 GACCTCTGGATAG
1 GACCTCTGGATAG
44725 GTCCTTCGGG
Statistics
Matches: 41, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
30 41 1.00
ACGTcount: A:0.25, C:0.21, G:0.25, T:0.30
Consensus pattern (30 bp):
GACCTCTGGATAGTTACCGAGGATCTTTAT
Found at i:48189 original size:21 final size:21
Alignment explanation
Indices: 48152--48195 Score: 54
Period size: 21 Copynumber: 2.1 Consensus size: 21
48142 GATTTCTAGA
*
48152 CAAGGGGAATCGGTACCCATT
1 CAAGGGGAATCGATACCCATT
*
48173 CAAGGGGAA-CTGATACCCCTT
1 CAAGGGGAATC-GATACCCATT
48194 CA
1 CA
48196 GACGAACATG
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
20 1 0.05
21 19 0.95
ACGTcount: A:0.30, C:0.27, G:0.25, T:0.18
Consensus pattern (21 bp):
CAAGGGGAATCGATACCCATT
Found at i:48269 original size:23 final size:22
Alignment explanation
Indices: 48225--48269 Score: 63
Period size: 22 Copynumber: 2.0 Consensus size: 22
48215 AATGCCAGAG
*
48225 GGGAACCGATACCCCCACAGGA
1 GGGAACCGATACCCCCAAAGGA
*
48247 GGGAACCGATTCCCCCTAAAGGA
1 GGGAACCGATACCCCC-AAAGGA
48270 AAAATGTGAA
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
22 15 0.75
23 5 0.25
ACGTcount: A:0.31, C:0.33, G:0.27, T:0.09
Consensus pattern (22 bp):
GGGAACCGATACCCCCAAAGGA
Found at i:49614 original size:32 final size:32
Alignment explanation
Indices: 49573--49699 Score: 134
Period size: 31 Copynumber: 4.0 Consensus size: 32
49563 GAGTCGAGGG
49573 TTTACCTATGTTCTACGAAACATATGGACAGT
1 TTTACCTATGTTCTACGAAACATATGGACAGT
* *
49605 TTTACCTATG-TCTTTCGAGACATATGGACA-T
1 TTTACCTATGTTC-TACGAAACATATGGACAGT
* * *
49636 TATACCTATGTTCTAAGGAACATATGGACAG-
1 TTTACCTATGTTCTACGAAACATATGGACAGT
* * ** *
49667 TTTACCTAGGTTCTTCGGGACCTATGGACAGT
1 TTTACCTATGTTCTACGAAACATATGGACAGT
49699 T
1 T
49700 ACCGAGGATC
Statistics
Matches: 78, Mismatches: 13, Indels: 8
0.79 0.13 0.08
Matches are distributed among these distances:
31 50 0.64
32 28 0.36
ACGTcount: A:0.28, C:0.19, G:0.19, T:0.35
Consensus pattern (32 bp):
TTTACCTATGTTCTACGAAACATATGGACAGT
Found at i:49719 original size:30 final size:30
Alignment explanation
Indices: 49658--49754 Score: 113
Period size: 30 Copynumber: 3.2 Consensus size: 30
49648 CTAAGGAACA
* * ***
49658 TATGGACAGTTTACCTAGGTTCTTCGGGACC
1 TATGGACAG-TTACCGAGGATCTTTATGACC
49689 TATGGACAGTTACCGAGGATCTTTATGACC
1 TATGGACAGTTACCGAGGATCTTTATGACC
* *
49719 TCTGGATAGTTACCGAGGATCTTTATGACC
1 TATGGACAGTTACCGAGGATCTTTATGACC
*
49749 TTTGGA
1 TATGGA
49755 TAGGTCCTTC
Statistics
Matches: 58, Mismatches: 8, Indels: 1
0.87 0.12 0.01
Matches are distributed among these distances:
30 49 0.84
31 9 0.16
ACGTcount: A:0.23, C:0.20, G:0.25, T:0.33
Consensus pattern (30 bp):
TATGGACAGTTACCGAGGATCTTTATGACC
Found at i:49755 original size:30 final size:30
Alignment explanation
Indices: 49685--49757 Score: 119
Period size: 30 Copynumber: 2.4 Consensus size: 30
49675 GGTTCTTCGG
*
49685 GACCTATGGACAGTTACCGAGGATCTTTAT
1 GACCTATGGATAGTTACCGAGGATCTTTAT
*
49715 GACCTCTGGATAGTTACCGAGGATCTTTAT
1 GACCTATGGATAGTTACCGAGGATCTTTAT
*
49745 GACCTTTGGATAG
1 GACCTATGGATAG
49758 GTCCTTCGGG
Statistics
Matches: 40, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
30 40 1.00
ACGTcount: A:0.25, C:0.19, G:0.25, T:0.32
Consensus pattern (30 bp):
GACCTATGGATAGTTACCGAGGATCTTTAT
Found at i:53828 original size:20 final size:21
Alignment explanation
Indices: 53774--53836 Score: 65
Period size: 20 Copynumber: 2.9 Consensus size: 21
53764 GATTCCCCTG
53774 TGGGGGGAATCGGTTCCTCTTCAA
1 TGGGGGG-ATCGGTTCC-C-TCAA
* *
53798 AGGGGGAATCGGTTCCCTC-A
1 TGGGGGGATCGGTTCCCTCAA
*
53818 TGGGGGGATCGATTCCCTC
1 TGGGGGGATCGGTTCCCTC
53837 TGCACCAAAA
Statistics
Matches: 34, Mismatches: 5, Indels: 4
0.79 0.12 0.09
Matches are distributed among these distances:
20 17 0.50
21 2 0.06
22 1 0.03
23 9 0.26
24 5 0.15
ACGTcount: A:0.16, C:0.24, G:0.35, T:0.25
Consensus pattern (21 bp):
TGGGGGGATCGGTTCCCTCAA
Found at i:57675 original size:22 final size:21
Alignment explanation
Indices: 57633--57672 Score: 55
Period size: 21 Copynumber: 1.9 Consensus size: 21
57623 GAGTTTGTTT
*
57633 TCATTTTTCAATTTTGAAACA
1 TCATTTTTCAATTTTAAAACA
57654 TCATTTTT-ATATTTTAAAA
1 TCATTTTTCA-ATTTTAAAA
57673 ACAATTTCTC
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
20 1 0.06
21 16 0.94
ACGTcount: A:0.35, C:0.10, G:0.03, T:0.53
Consensus pattern (21 bp):
TCATTTTTCAATTTTAAAACA
Found at i:66906 original size:12 final size:12
Alignment explanation
Indices: 66864--66913 Score: 50
Period size: 12 Copynumber: 4.2 Consensus size: 12
66854 ATGCACTCAT
66864 TTTAATATATTA
1 TTTAATATATTA
*
66876 TAT-ATATA-TA
1 TTTAATATATTA
* *
66886 TATATATATATCA
1 TTTA-ATATATTA
66899 TTTAATATATTA
1 TTTAATATATTA
66911 TTT
1 TTT
66914 TATTAATTTG
Statistics
Matches: 31, Mismatches: 4, Indels: 6
0.76 0.10 0.15
Matches are distributed among these distances:
10 5 0.16
11 5 0.16
12 17 0.55
13 4 0.13
ACGTcount: A:0.42, C:0.02, G:0.00, T:0.56
Consensus pattern (12 bp):
TTTAATATATTA
Found at i:66908 original size:2 final size:2
Alignment explanation
Indices: 66868--66896 Score: 51
Period size: 2 Copynumber: 15.0 Consensus size: 2
66858 ACTCATTTTA
66868 AT AT AT -T AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
66897 CATTTAATAT
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
1 1 0.04
2 25 0.96
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
AT
Found at i:69145 original size:13 final size:13
Alignment explanation
Indices: 69127--69152 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
69117 TTTTGGAAGA
69127 GGAAGTTGTCAGG
1 GGAAGTTGTCAGG
69140 GGAAGTTGTCAGG
1 GGAAGTTGTCAGG
69153 CTTGAAGAGC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.23, C:0.08, G:0.46, T:0.23
Consensus pattern (13 bp):
GGAAGTTGTCAGG
Found at i:87527 original size:15 final size:15
Alignment explanation
Indices: 87507--87538 Score: 55
Period size: 15 Copynumber: 2.1 Consensus size: 15
87497 TACCTAACTG
*
87507 AATTTCTATCTCTTT
1 AATTTCTAACTCTTT
87522 AATTTCTAACTCTTT
1 AATTTCTAACTCTTT
87537 AA
1 AA
87539 AAAAAAAAAA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.28, C:0.19, G:0.00, T:0.53
Consensus pattern (15 bp):
AATTTCTAACTCTTT
Found at i:89557 original size:21 final size:21
Alignment explanation
Indices: 89518--89557 Score: 55
Period size: 21 Copynumber: 1.9 Consensus size: 21
89508 TAACAAAGGT
*
89518 AGTACCGATACTCCCTATAGG
1 AGTACCGATACTCCATATAGG
89539 AGTACCGATAC-CCTATATA
1 AGTACCGATACTCC-ATATA
89558 CTGGGCAATT
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
20 2 0.12
21 15 0.88
ACGTcount: A:0.33, C:0.28, G:0.15, T:0.25
Consensus pattern (21 bp):
AGTACCGATACTCCATATAGG
Found at i:92552 original size:21 final size:20
Alignment explanation
Indices: 92503--92553 Score: 57
Period size: 21 Copynumber: 2.5 Consensus size: 20
92493 CATCTTTATT
* *
92503 TTTTAACTTTTCATATATAA
1 TTTTAACTATTCATAAATAA
*
92523 TTGTAAACTATTCATAAATAAA
1 TT-TTAACTATTCATAAAT-AA
92545 TTTTAACTA
1 TTTTAACTA
92554 AACACAAATT
Statistics
Matches: 25, Mismatches: 4, Indels: 3
0.78 0.12 0.09
Matches are distributed among these distances:
20 2 0.08
21 19 0.76
22 4 0.16
ACGTcount: A:0.41, C:0.10, G:0.02, T:0.47
Consensus pattern (20 bp):
TTTTAACTATTCATAAATAA
Found at i:92723 original size:3 final size:3
Alignment explanation
Indices: 92708--92783 Score: 125
Period size: 3 Copynumber: 25.3 Consensus size: 3
92698 TCTTTTTGTA
* *
92708 TTC TTC TTA TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TAC
1 TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC
*
92756 TTC TTC TAC TTC TTC TTC TTC TTC TTC T
1 TTC TTC TTC TTC TTC TTC TTC TTC TTC T
92784 CGATTTTCAT
Statistics
Matches: 67, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
3 67 1.00
ACGTcount: A:0.04, C:0.32, G:0.00, T:0.64
Consensus pattern (3 bp):
TTC
Found at i:93537 original size:30 final size:30
Alignment explanation
Indices: 93501--93561 Score: 86
Period size: 30 Copynumber: 2.0 Consensus size: 30
93491 ATATATTTTT
* * *
93501 GCCCATTACGACACGTGGAAAAATTAATTG
1 GCCCATTAAGACAAGTGAAAAAATTAATTG
*
93531 GCCCATTAAGTCAAGTGAAAAAATTAATTG
1 GCCCATTAAGACAAGTGAAAAAATTAATTG
93561 G
1 G
93562 TCCAATAGGT
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.39, C:0.16, G:0.20, T:0.25
Consensus pattern (30 bp):
GCCCATTAAGACAAGTGAAAAAATTAATTG
Found at i:94752 original size:207 final size:204
Alignment explanation
Indices: 94320--94870 Score: 771
Period size: 207 Copynumber: 2.7 Consensus size: 204
94310 GATCGTTCCA
* * * *
94320 TGGATCCAATATCATTGCCGGCTAACTGTTGAGGTGCACTCTGGTGATGAAAATTTTGTTGAAGT
1 TGGATCCAATATCATTGCCGGCAAACTGGTGAGGTGCACTCTGGTGATGAAAGTTTTGTTGAGGT
* * ** * * * *
94385 TGATAAGAATTTAGGAAGGGATCGGCATTGGAATGACAAATTAGACCTAAATCATGAGTTGAATG
66 TGATAAGAATTTAGGACGAGATCGGCATTGGAATGATGAATGAAACCTAAATCATCAGTGGAATG
* * *
94450 ACCAGGTTTTGTTCCAGGTATTGTCCGTGGATCCATACAAGGTCTGTAAGGCAATGATCTTACCA
131 AACAGGTTTTGTTCCAGGTACTGCCCGTGGATCCATACAAGGTCTGTAAGGCAATGATCTTACCA
94515 TTCTTGAAG
196 TTCTTGAAG
*
94524 TGGATCCAATATCATTGCCGGCAAACTGGTGAGGTGAACTCTGGTGATGAAAGTTTTGTTGAGGT
1 TGGATCCAATATCATTGCCGGCAAACTGGTGAGGTGCACTCTGGTGATGAAAGTTTTGTTGAGGT
* * * * *
94589 CGATAAGAATTTAGGACGAGATTGGCATTGGAGTGATGAATGACACCTACATCATCAGTGGAATG
66 TGATAAGAATTTAGGACGAGATCGGCATTGGAATGATGAATGAAACCTAAATCATCAGTGGAATG
** * *
94654 AACAGGTTTTGTTGAAGTAGGTACTGCCCGTGGATCCGTATAAGGTCTGTAAGGCAATGATCTTA
131 AACAGGTTTTGTT---CCAGGTACTGCCCGTGGATCCATACAAGGTCTGTAAGGCAATGATCTTA
*
94719 CCATTGTTGAAG
193 CCATTCTTGAAG
* *
94731 TGGATCCAATAGCATTGCCGGCAAACTGGTGAGGAGCACTCTGGTGATGAAAGTTTTGTTGAGGT
1 TGGATCCAATATCATTGCCGGCAAACTGGTGAGGTGCACTCTGGTGATGAAAGTTTTGTTGAGGT
* * * *
94796 TGATAAGAATTTAGGAC-AGGATCAGCATTGGATTGATGAATGAAACCTATATCATCAATGGAAT
66 TGATAAGAATTTAGGACGA-GATCGGCATTGGAATGATGAATGAAACCTAAATCATCAGTGGAAT
94860 GAACAGGTTTT
130 GAACAGGTTTT
94871 TCTTCCTTCG
Statistics
Matches: 308, Mismatches: 35, Indels: 5
0.89 0.10 0.01
Matches are distributed among these distances:
204 125 0.41
206 1 0.00
207 182 0.59
ACGTcount: A:0.29, C:0.14, G:0.27, T:0.30
Consensus pattern (204 bp):
TGGATCCAATATCATTGCCGGCAAACTGGTGAGGTGCACTCTGGTGATGAAAGTTTTGTTGAGGT
TGATAAGAATTTAGGACGAGATCGGCATTGGAATGATGAATGAAACCTAAATCATCAGTGGAATG
AACAGGTTTTGTTCCAGGTACTGCCCGTGGATCCATACAAGGTCTGTAAGGCAATGATCTTACCA
TTCTTGAAG
Found at i:95424 original size:177 final size:173
Alignment explanation
Indices: 95128--95499 Score: 471
Period size: 177 Copynumber: 2.1 Consensus size: 173
95118 CAGCATTTGG
* * * * * * *
95128 CCTCTCAGATGGTACGGAGGTAGCACTCGTCCCTAATTATAAAAGAACAATGTAATGTAAAATTC
1 CCTCTCAGAAGGTACAGAGGTAACACTCATACCTAATTATAAAAGAAAAATATAATGTAAAATTC
* *
95193 CAGTAGATCAATAATAAAAAATATGGAATTCACAGAAACATAGTTTGTTTTCACCATCAT-GCTC
66 CAGTAGATCAATAATAAAAAATATGGAATTCACAGAAACAAAGTTTGCTTTCACCATC-TCGCTC
* * *
95257 TCGT-ACATACCAACATCGCCATTTTGCTGAGTTGTTGGAGTAGA
130 TC-TAACATACCAACATCACCATCTTGCTGAATTGTTGGAGTAGA
*
95301 CCTCTCAGAAGGTACAGAGGTAACACTCATACCTAATTATAAAAGAAGAAACATATGATGTAAAA
1 CCTCTCAGAAGGTACAGAGGTAACACTCATACCTAATTATAAAAG-A-AAA-ATATAATGTAAAA
* *
95366 TTCCAGTAGCTCAATAGTCAAAAGAA-ATGGAATTCACAGAAACAAAGTTTGCTTTCACCATCTC
63 TTCCAGTAGATCAATAAT-AAAA-AATATGGAATTCACAGAAACAAAGTTTGCTTTCACCATCTC
* * *
95430 GCTTTCTAACATACCAACGTCACCATCTTGCTGAATTGTTGGAGTAGG
126 GCTCTCTAACATACCAACATCACCATCTTGCTGAATTGTTGGAGTAGA
* * *
95478 CTTCTCAGAGGGAACAGAGGTA
1 CCTCTCAGAAGGTACAGAGGTA
95500 GCAGTCATCC
Statistics
Matches: 171, Mismatches: 21, Indels: 10
0.85 0.10 0.05
Matches are distributed among these distances:
173 40 0.23
174 1 0.01
175 2 0.01
176 29 0.17
177 97 0.57
178 2 0.01
ACGTcount: A:0.36, C:0.20, G:0.18, T:0.27
Consensus pattern (173 bp):
CCTCTCAGAAGGTACAGAGGTAACACTCATACCTAATTATAAAAGAAAAATATAATGTAAAATTC
CAGTAGATCAATAATAAAAAATATGGAATTCACAGAAACAAAGTTTGCTTTCACCATCTCGCTCT
CTAACATACCAACATCACCATCTTGCTGAATTGTTGGAGTAGA
Found at i:96027 original size:30 final size:30
Alignment explanation
Indices: 95986--96056 Score: 106
Period size: 30 Copynumber: 2.4 Consensus size: 30
95976 TGTTGGAGTG
* * *
95986 GGCCTCACAGATGGTACATACGTAGTACTC
1 GGCCTCTCAGATGGTACATACATAGCACTC
96016 GGCCTCTCAGATGGTACATACATAGCACTC
1 GGCCTCTCAGATGGTACATACATAGCACTC
*
96046 AGCCTCTCAGA
1 GGCCTCTCAGA
96057 CAGTACAGAG
Statistics
Matches: 37, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 37 1.00
ACGTcount: A:0.27, C:0.30, G:0.21, T:0.23
Consensus pattern (30 bp):
GGCCTCTCAGATGGTACATACATAGCACTC
Found at i:96063 original size:30 final size:30
Alignment explanation
Indices: 95999--96063 Score: 85
Period size: 30 Copynumber: 2.2 Consensus size: 30
95989 CTCACAGATG
* * * **
95999 GTACATACGTAGTACTCGGCCTCTCAGATG
1 GTACATACATAGCACTCAGCCTCTCAGACA
96029 GTACATACATAGCACTCAGCCTCTCAGACA
1 GTACATACATAGCACTCAGCCTCTCAGACA
96059 GTACA
1 GTACA
96064 GAGGCAGCAC
Statistics
Matches: 30, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
30 30 1.00
ACGTcount: A:0.29, C:0.29, G:0.18, T:0.23
Consensus pattern (30 bp):
GTACATACATAGCACTCAGCCTCTCAGACA
Found at i:96404 original size:177 final size:177
Alignment explanation
Indices: 96047--96411 Score: 455
Period size: 177 Copynumber: 2.1 Consensus size: 177
96037 ATAGCACTCA
* ** * * *
96047 GCCTCTCAGACAGTACAGAGGCAGCACTTGTACCTAATTATAAAAGAAGAAACATGTGATGTAAA
1 GCCTCTCAGACAGTACACAGGCAGCACCCGTACCTAATAATAAAAGAAGAAACACGTGACGTAAA
* * *
96112 ATTCCATTAGCTCAATAGTCAAAAGAAAGGGAATTCACAGAAACATAGTTTGCTTGCACCATCTT
66 ATTCCAGTAGCTCAAGAGTCAAAAGAAAGGGAATTCACAGAAACATAGTTTGCTTGCACCATCTC
* * * *
96177 GCTCTCTAACATACCAACATCACCCTCTTGCCGAGTTCTTTGAATAG
131 ACTCTCTAACATACCAACATCACCATATTGCCGAGTTATTTGAATAG
* * * *
96224 GCCTCACAGACAGTACACAGGTAGCCCCCGTACCTAATAATAAAAGAAGAAACACGTGACGTAAT
1 GCCTCTCAGACAGTACACAGGCAGCACCCGTACCTAATAATAAAAGAAGAAACACGTGACGTAAA
* * * * * *
96289 ATTCCAGTAGCTTAAGAGTCGAAAGAAATGGACTTTACAGAAACATAGTTTGCTTTCACCATCTC
66 ATTCCAGTAGCTCAAGAGTCAAAAGAAAGGGAATTCACAGAAACATAGTTTGCTTGCACCATCTC
* * **
96354 ACTCTCTTACATA-CATATATCACCATATTGCTTAG-TATTTGAAGTAG
131 ACTCTCTAACATACCA-ACATCACCATATTGCCGAGTTATTTGAA-TAG
96401 GCCTCTCAGAC
1 GCCTCTCAGAC
96412 GGCATAGAGG
Statistics
Matches: 158, Mismatches: 28, Indels: 4
0.83 0.15 0.02
Matches are distributed among these distances:
176 9 0.06
177 149 0.94
ACGTcount: A:0.35, C:0.23, G:0.16, T:0.26
Consensus pattern (177 bp):
GCCTCTCAGACAGTACACAGGCAGCACCCGTACCTAATAATAAAAGAAGAAACACGTGACGTAAA
ATTCCAGTAGCTCAAGAGTCAAAAGAAAGGGAATTCACAGAAACATAGTTTGCTTGCACCATCTC
ACTCTCTAACATACCAACATCACCATATTGCCGAGTTATTTGAATAG
Found at i:96998 original size:42 final size:42
Alignment explanation
Indices: 96931--97140 Score: 314
Period size: 42 Copynumber: 5.0 Consensus size: 42
96921 TTGCAGCGTG
* *
96931 TCGTTTGCGCTTCTCAAGACATACATTTCTTCTTTCAGCCTC
1 TCGTTTGCGCTTCCCAGGACATACATTTCTTCTTTCAGCCTC
* * * *
96973 TCGTTTGCGCTTCCCAGGTCCTACATTTCTTATTTCAGTCTC
1 TCGTTTGCGCTTCCCAGGACATACATTTCTTCTTTCAGCCTC
* *
97015 TCGTTTGCGCTTCCCAAGACAAACATTTCTTCTTTCAGCCTC
1 TCGTTTGCGCTTCCCAGGACATACATTTCTTCTTTCAGCCTC
* *
97057 TCGTTTGCGCTTCCCAGGACGA-ACATTGCTTATTTCAGCCTC
1 TCGTTTGCGCTTCCCAGGAC-ATACATTTCTTCTTTCAGCCTC
97099 TCGTTTGCGCTTCCCAGGACATACATTTCTTCTTTCAGCCTC
1 TCGTTTGCGCTTCCCAGGACATACATTTCTTCTTTCAGCCTC
97141 ATCACACCAA
Statistics
Matches: 149, Mismatches: 17, Indels: 4
0.88 0.10 0.02
Matches are distributed among these distances:
41 1 0.01
42 147 0.99
43 1 0.01
ACGTcount: A:0.16, C:0.32, G:0.14, T:0.38
Consensus pattern (42 bp):
TCGTTTGCGCTTCCCAGGACATACATTTCTTCTTTCAGCCTC
Found at i:97033 original size:84 final size:84
Alignment explanation
Indices: 96931--97140 Score: 348
Period size: 84 Copynumber: 2.5 Consensus size: 84
96921 TTGCAGCGTG
* * *
96931 TCGTTTGCGCTTCTCAAGACATACATTTCTTCTTTCAGCCTCTCGTTTGCGCTTCCCAGGTCCTA
1 TCGTTTGCGCTTCCCAAGACATACATTTCTTCTTTCAGCCTCTCGTTTGCGCTTCCCAGGACCAA
* *
96996 CATTTCTTATTTCAGTCTC
66 CATTGCTTATTTCAGCCTC
* *
97015 TCGTTTGCGCTTCCCAAGACAAACATTTCTTCTTTCAGCCTCTCGTTTGCGCTTCCCAGGACGAA
1 TCGTTTGCGCTTCCCAAGACATACATTTCTTCTTTCAGCCTCTCGTTTGCGCTTCCCAGGACCAA
97080 CATTGCTTATTTCAGCCTC
66 CATTGCTTATTTCAGCCTC
*
97099 TCGTTTGCGCTTCCCAGGACATACATTTCTTCTTTCAGCCTC
1 TCGTTTGCGCTTCCCAAGACATACATTTCTTCTTTCAGCCTC
97141 ATCACACCAA
Statistics
Matches: 117, Mismatches: 9, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
84 117 1.00
ACGTcount: A:0.16, C:0.32, G:0.14, T:0.38
Consensus pattern (84 bp):
TCGTTTGCGCTTCCCAAGACATACATTTCTTCTTTCAGCCTCTCGTTTGCGCTTCCCAGGACCAA
CATTGCTTATTTCAGCCTC
Found at i:97490 original size:225 final size:225
Alignment explanation
Indices: 97098--97502 Score: 634
Period size: 225 Copynumber: 1.8 Consensus size: 225
97088 ATTTCAGCCT
*
97098 CTCGTTTGCGCTTCCCAGGACATACATTTCTTCTTTCAGCCTCATCACACCAAAGCTGAAGTAGA
1 CTCGTTTGCGCTTCCCAGCACATACATTTCTTCTTTCAGCCTCATCACACCAAAGCTGAAGTAGA
* * *
97163 AAAAAAATTGTATAAACAAACCTAGTCTATCATTGGTATTACCTAAAATATAGACTTTTCAATCA
66 AAAAAAATTGTATAAACAAACCAAGTCTACCATTGGTATTACCTAAAATATAGACTTTTCAACCA
* * *
97228 AATACTTACCTGTCTGTAAGTTCTTGATTTGTAAAGGTTACGACCCTTTAGGACCCTTATTCTTT
131 AATACTTACCTGTCTGCAAGTTCTCGATTTATAAAGGTTACGACCCTTTAGGACCCTTATTCTTT
97293 CTATTTCTTTTACCAGTCTTGCAGCATTGC
196 CTATTTCTTTTACCAGTCTTGCAGCATTGC
* * * *
97323 CTCGTTTGTGCTTCTCAGCA-AGTACATTTCTTCTTTCAGCCTCATCACACCAACGCTGATGTAG
1 CTCGTTTGCGCTTCCCAGCACA-TACATTTCTTCTTTCAGCCTCATCACACCAAAGCTGAAGTAG
* * * * *
97387 -AAAAAAATTGTATGAACAAACCAAGTCTACCATTGGTATTACCTAAAAATGTTGATTTTTCAGC
65 AAAAAAAATTGTATAAACAAACCAAGTCTACCATTGGTATTACCT-AAAATATAGACTTTTCAAC
97451 CAAATACTTACCTGTCTGCAAGTTCTCGATTTATAAAGGTTACGACCCTTTA
129 CAAATACTTACCTGTCTGCAAGTTCTCGATTTATAAAGGTTACGACCCTTTA
97503 CGAGCAAAGG
Statistics
Matches: 162, Mismatches: 16, Indels: 4
0.89 0.09 0.02
Matches are distributed among these distances:
224 42 0.26
225 120 0.74
ACGTcount: A:0.29, C:0.23, G:0.13, T:0.35
Consensus pattern (225 bp):
CTCGTTTGCGCTTCCCAGCACATACATTTCTTCTTTCAGCCTCATCACACCAAAGCTGAAGTAGA
AAAAAAATTGTATAAACAAACCAAGTCTACCATTGGTATTACCTAAAATATAGACTTTTCAACCA
AATACTTACCTGTCTGCAAGTTCTCGATTTATAAAGGTTACGACCCTTTAGGACCCTTATTCTTT
CTATTTCTTTTACCAGTCTTGCAGCATTGC
Found at i:99174 original size:33 final size:33
Alignment explanation
Indices: 99132--99231 Score: 173
Period size: 33 Copynumber: 3.0 Consensus size: 33
99122 CTAATGCGGA
99132 CCAAAATAAACAAATTCAAGGACTAATTTGGAC
1 CCAAAATAAACAAATTCAAGGACTAATTTGGAC
99165 CCAAAATAAACAAATTCAAGGACTAATTTGGAC
1 CCAAAATAAACAAATTCAAGGACTAATTTGGAC
* * *
99198 CCAAAATAAACAAATCCAGGGACTAATGTGGAC
1 CCAAAATAAACAAATTCAAGGACTAATTTGGAC
99231 C
1 C
99232 AACAAATTAG
Statistics
Matches: 64, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
33 64 1.00
ACGTcount: A:0.47, C:0.20, G:0.14, T:0.19
Consensus pattern (33 bp):
CCAAAATAAACAAATTCAAGGACTAATTTGGAC
Found at i:100000 original size:20 final size:21
Alignment explanation
Indices: 99971--100011 Score: 57
Period size: 20 Copynumber: 2.0 Consensus size: 21
99961 TCAATCTTCT
*
99971 ATTTTCAGAACA-AAAAATGA
1 ATTTTAAGAACAGAAAAATGA
*
99991 ATTTTAAGAAGAGAAAAATGA
1 ATTTTAAGAACAGAAAAATGA
100012 CCTTTGAGAA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
20 10 0.56
21 8 0.44
ACGTcount: A:0.56, C:0.05, G:0.15, T:0.24
Consensus pattern (21 bp):
ATTTTAAGAACAGAAAAATGA
Found at i:100259 original size:395 final size:398
Alignment explanation
Indices: 99385--101254 Score: 2186
Period size: 394 Copynumber: 4.7 Consensus size: 398
99375 ATGATGAAAT
* * *
99385 TACCTCCAATGCTCAAGAATTCTTTGTTGGCACACTGCCTTAGTGCCTGTGATAAGGAGGCCATG
1 TACCTCCAATGCTCAAGAATTCTCTGTTGACACACTGCCTTAGTGCCTGTGATACGGAGGCCATG
* * * *
99450 ATTTCTCAAATAAGCTTTCAGTTCTTTCAAGCTTAAGCTTTCAAAGTCACCCCCTTCTATGGAAC
66 GTTTCTCAAATAAGCTTTGAGTTCTTTCAAGCTTAAGCTTTCTAAGTCACCTCCTTCTATGGAAC
* * * * * * *
99515 A-ACAGAAACATATATTGTAAGGGCATTTTTTGGGATCAAATTCAATCTTCTATTTTCA-AACAA
131 ACA-AGGATCATAAATTGTAACGGTATTTTATCGGATCAAATTCAATCTTCTATTTTCAGAACAA
* * * * *
99578 AAAATGAATTCTACGAAGAGAAAGATGACCTTTGAGAATTGCAATGACTTGATTGCAGAGAGAAT
195 AAAATGAATTCTAAGAAGAGAAAAATGACCTTTGAGAATAGCAATGACTCGATTGCAGAGAGATT
* * * * *
99643 CATCGTTCTCAGTCCGGTCATTATAGTTCACATTGTTCCTTTCCTCTTCCTCTTCTTCCCCAGTT
260 CGTCGTTCTC--T--GGTC---ATAGATC-CATTGTTCCCTTCCTCTTTCTCTTCTTCCTCAGTT
* * * *** ****** *
99708 TCATCTCCACTGATGATATCAAAATT-AATCA-AAATTGGGGAGGGGGGGGGGGAATAATTGAAA
317 TCAACTCCACTGATGATATGAAAATTAAATCAGACATAAAGG-GGGAAAACTGAAATAATTGAAA
* *
99771 TAGAAATAGG-AATGTAAA
381 TTGAAATAGGAAAT-AAAA
* * *
99789 TACCTCCAATGCTCAAGAATTCTCTGTTGACACATTGCCTTACTGCCTGTGATACGAAGGCCATG
1 TACCTCCAATGCTCAAGAATTCTCTGTTGACACACTGCCTTAGTGCCTGTGATACGGAGGCCATG
* *
99854 ATTTCTCAAATAAGCTTTGAGTTCTTTCATGCTTAAGCTTTCTAAGTCACCTCCTTCTATGGAAC
66 GTTTCTCAAATAAGCTTTGAGTTCTTTCAAGCTTAAGCTTTCTAAGTCACCTCCTTCTATGGAAC
* * *
99919 ACAAGGATGATAAATTGTAACGTTATTTTATCAGATCAAATTTCAATCTTCTATTTTCAGAACAA
131 ACAAGGATCATAAATTGTAACGGTATTTTATCGGATCAAA-TTCAATCTTCTATTTTCAGAACAA
* *
99984 AAAATGAATTTTAAGAAGAGAAAAATGACCTTTGAGAATAGCAACGACTCGATTGCAGAGAGATT
195 AAAATGAATTCTAAGAAGAGAAAAATGACCTTTGAGAATAGCAATGACTCGATTGCAGAGAGATT
* *
100049 CGTCGTTCT-TGGTC-T-GAT-CATTGTTCCCTTCCTCTTTCTCTTCTTCCTCATTTTGAACTCC
260 CGTCGTTCTCTGGTCATAGATCCATTGTTCCCTTCCTCTTTCTCTTCTTCCTCAGTTTCAACTCC
*
100110 ACTGATGATATGAAAATTAAATCAGACATAAAGGGGGAAAACTGAAATAATTGAAATTGAATTAG
325 ACTGATGATATGAAAATTAAATCAGACATAAAGGGGGAAAACTGAAATAATTGAAATTGAAATAG
100175 GAAATAAAA
390 GAAATAAAA
*
100184 TACCTCCAATGCTCATGAATTCTCTGTTGACACACTGCCTTAGTGCCTGTGATACGGAGGCCATG
1 TACCTCCAATGCTCAAGAATTCTCTGTTGACACACTGCCTTAGTGCCTGTGATACGGAGGCCATG
*
100249 GTTTCTCAAATAAGCTTTGAGTTCTTTCATGCTTAAGCTTTCTAAGTCACCTCCTTCTATGGAAC
66 GTTTCTCAAATAAGCTTTGAGTTCTTTCAAGCTTAAGCTTTCTAAGTCACCTCCTTCTATGGAAC
*
100314 ACAAGGATGATAAATTGTAACGGTATTTTATCGGATCAAATTCAATCTTCTATTTTCAGAACAAA
131 ACAAGGATCATAAATTGTAACGGTATTTTATCGGATCAAATTCAATCTTCTATTTTCAGAACAAA
* *
100379 AAATGAATTTTAAGAAGAGAAAAATGACCTTTGAGAATAGCAACGACTCGATTGCAGAGAGATTC
196 AAATGAATTCTAAGAAGAGAAAAATGACCTTTGAGAATAGCAATGACTCGATTGCAGAGAGATTC
* *
100444 GTCGTTCT-TGGTC-T-GAT-CATTGTTCCCTTCCTCTTTCTCTTCTTCCTCATTTTGAACTCCA
261 GTCGTTCTCTGGTCATAGATCCATTGTTCCCTTCCTCTTTCTCTTCTTCCTCAGTTTCAACTCCA
*
100505 CTGATGATATGAAAATTAAATCAGACATAAAGGGGGAAAACTGAAATAATTGAAATTGAATTAGG
326 CTGATGATATGAAAATTAAATCAGACATAAAGGGGGAAAACTGAAATAATTGAAATTGAAATAGG
100570 AAATAAAA
391 AAATAAAA
*
100578 TACCTCCAATGCTCATGAATTCTCTGTTGACACACTGCCTTAGTGCCTGTGATACGGAGGCCATG
1 TACCTCCAATGCTCAAGAATTCTCTGTTGACACACTGCCTTAGTGCCTGTGATACGGAGGCCATG
* * * * * * *
100643 GTTTCTCAAATAAGCTTTGTGTTCTTTCAAGCTCATGCTTTCCAGGTCACCTCCTTCTGTGCAAC
66 GTTTCTCAAATAAGCTTTGAGTTCTTTCAAGCTTAAGCTTTCTAAGTCACCTCCTTCTATGGAAC
* * * * *
100708 ACAAGGATAAAAAATTGTAAGGCCGT-TTTT-TCCGGATCAAATTCAATCTTCTAATTTCAAAAC
131 ACAAGGATCATAAATTGTAA--CGGTATTTTAT-CGGATCAAATTCAATCTTCTATTTTCAGAAC
* ** * *
100771 AAAAAACTGAATTCTAAGAAGA-TAATTTG-CCTTTGAGAATAGCAATGACCCGATTGCAAAGAG
193 AAAAAA-TGAATTCTAAGAAGAGAAAAATGACCTTTGAGAATAGCAATGACTCGATTGCAGAGAG
* *** * * *
100834 ATTCATCGTCCTCAATCCCATCATTATAGTCCGAATTGCTCCCTTTGTCTTCCTCTTTCTGTTCT
257 ATTCGTCGT--TC--TCTGGTCA-TAGA-TCC--ATTG-TTCC-----CTTCCTCTTTCTCTTCT
** * * * * * * *
100899 TCCTCAGTTTCTTCTCTACCGATGATATGAAAATAAAATCAAACTTAAAAGGGGAAAAACT-AAT
308 TCCTCAGTTTCAACTCCACTGATGATATGAAAATTAAATCAGACAT-AAAGGGGGAAAACTGAAA
* * * *
100963 TAGTGGAAATTGAAATAGGAACTTAAA
372 TAATTGAAATTGAAATAGGAAATAAAA
*
100990 TACCTCCAATGCTCAAGAATTCTCTGTATG-CACACTGCCTTGGTGCCTGTGATACGGAGGCCAT
1 TACCTCCAATGCTCAAGAATTCTCTGT-TGACACACTGCCTTAGTGCCTGTGATACGGAGGCCAT
* * * * *
101054 GGTTTCTCAAATAAGTTTTGAGTTCTTTCAGGCTTAAGCTTTCTAAGTCTCCACCTTCTATGGAG
65 GGTTTCTCAAATAAGCTTTGAGTTCTTTCAAGCTTAAGCTTTCTAAGTCACCTCCTTCTATGGAA
* * * *** * * *
101119 CACAAGGATCAGAAA----AAAGGCATTTT-TTTAATCAAAATCAATCTTCTATTTTTAGAAGAA
130 CACAAGGATCATAAATTGTAACGGTATTTTATCGGATCAAATTCAATCTTCTATTTTCAGAACAA
** * * * * *
101179 AAAACTGAATTCTAAGAAGAGAACGATGACCTTTGAGAATGGAAATGATTCGATTGCTGACAGAT
195 AAAA-TGAATTCTAAGAAGAGAAAAATGACCTTTGAGAATAGCAATGACTCGATTGCAGAGAGAT
*
101244 TCGTCGCTCTC
259 TCGTCGTTCTC
101255 CCAATGTTCA
Statistics
Matches: 1293, Mismatches: 140, Indels: 66
0.86 0.09 0.04
Matches are distributed among these distances:
394 458 0.35
395 237 0.18
396 29 0.02
397 1 0.00
398 1 0.00
399 2 0.00
401 5 0.00
402 1 0.00
403 2 0.00
404 151 0.12
405 19 0.01
406 123 0.10
407 11 0.01
408 36 0.03
412 202 0.16
413 15 0.01
ACGTcount: A:0.31, C:0.20, G:0.17, T:0.32
Consensus pattern (398 bp):
TACCTCCAATGCTCAAGAATTCTCTGTTGACACACTGCCTTAGTGCCTGTGATACGGAGGCCATG
GTTTCTCAAATAAGCTTTGAGTTCTTTCAAGCTTAAGCTTTCTAAGTCACCTCCTTCTATGGAAC
ACAAGGATCATAAATTGTAACGGTATTTTATCGGATCAAATTCAATCTTCTATTTTCAGAACAAA
AAATGAATTCTAAGAAGAGAAAAATGACCTTTGAGAATAGCAATGACTCGATTGCAGAGAGATTC
GTCGTTCTCTGGTCATAGATCCATTGTTCCCTTCCTCTTTCTCTTCTTCCTCAGTTTCAACTCCA
CTGATGATATGAAAATTAAATCAGACATAAAGGGGGAAAACTGAAATAATTGAAATTGAAATAGG
AAATAAAA
Found at i:100394 original size:20 final size:21
Alignment explanation
Indices: 100365--100405 Score: 57
Period size: 20 Copynumber: 2.0 Consensus size: 21
100355 TCAATCTTCT
*
100365 ATTTTCAGAACA-AAAAATGA
1 ATTTTAAGAACAGAAAAATGA
*
100385 ATTTTAAGAAGAGAAAAATGA
1 ATTTTAAGAACAGAAAAATGA
100406 CCTTTGAGAA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
20 10 0.56
21 8 0.44
ACGTcount: A:0.56, C:0.05, G:0.15, T:0.24
Consensus pattern (21 bp):
ATTTTAAGAACAGAAAAATGA
Found at i:101473 original size:260 final size:258
Alignment explanation
Indices: 100995--101478 Score: 611
Period size: 260 Copynumber: 1.9 Consensus size: 258
100985 TTAAATACCT
*
100995 CCAATGCTCAAGAATTCTCTGTATGCACACTGCCTTGGTGCCTGTGATACGGAGGCCATGGTTTC
1 CCAATGCTCAAGAATTCTCTGTATGCACACTGCCTTAGTGCCTGTGATACGGAGGCCATGGTTTC
* * * * * **
101060 TCAAATAAGTTTTGAGTTCTTTCAGGCTTAAGCTTTCTAAGTCTCCACCTTCTATGGAGCACAAG
66 TCAAATAAGCTTTGAGTTCTTTCAAGCTCAAGCTGTCTAAG-CTCCACCTCCTATGGAAAACAAG
* * * * *
101125 GATCAGAAAAAAGGCATTTTTTTAATCAAAATCAATCTTCTATTTTTAGAAGAAAAAACTGAATT
130 GATCAGAAAAAAGGCATTTTCTTAATCAAAATCAATCTTCTATTTTCAAAACAAAAAAC-GAACT
* * * *
101190 CTAAGAAGAGAACGATGACCTTTGAGAATGGAAATGATTCGATTGCTGACAGATTCGTCGCTCTC
194 CCAAGAACAGAACAAAGACCTTTGAGAATGGAAATGATTCGATTGCTGACAGATTCGTCGCTCTC
*
101255 CCAATGTTCAAGAATTCTCTGT-TGACACACTGCCTTAGTGCCTGTGATACGGAGGCCATGGTTT
1 CCAATGCTCAAGAATTCTCTGTATG-CACACTGCCTTAGTGCCTGTGATACGGAGGCCATGGTTT
101319 CTCAAATAAGCTTTGAGTTCTTTCAAGCTCAAGCTGTCTAAG-T-CACCTCCTATGGAAAACAAG
65 CTCAAATAAGCTTTGAGTTCTTTCAAGCTCAAGCTGTCTAAGCTCCACCTCCTATGGAAAACAAG
* * ** * *
101382 GATCA-ATAATTGTATGGTCATTTTCTTGGTGCAGATTCAATCTTCTATTTTCAAAACAAAAAA-
130 GATCAGA-AA---AAAGG-CATTTTCTTAAT-CAAAATCAATCTTCTATTTTCAAAACAAAAAAC
*
101445 GAACTCCGAGAACAGAA-AAAGAACCTTTGAGAAT
189 GAACTCCAAGAACAGAACAAAG-ACCTTTGAGAAT
101479 ATTAATGACT
Statistics
Matches: 191, Mismatches: 25, Indels: 16
0.82 0.11 0.07
Matches are distributed among these distances:
256 1 0.01
257 24 0.13
258 1 0.01
259 4 0.02
260 125 0.65
261 9 0.05
262 27 0.14
ACGTcount: A:0.31, C:0.20, G:0.19, T:0.31
Consensus pattern (258 bp):
CCAATGCTCAAGAATTCTCTGTATGCACACTGCCTTAGTGCCTGTGATACGGAGGCCATGGTTTC
TCAAATAAGCTTTGAGTTCTTTCAAGCTCAAGCTGTCTAAGCTCCACCTCCTATGGAAAACAAGG
ATCAGAAAAAAGGCATTTTCTTAATCAAAATCAATCTTCTATTTTCAAAACAAAAAACGAACTCC
AAGAACAGAACAAAGACCTTTGAGAATGGAAATGATTCGATTGCTGACAGATTCGTCGCTCTC
Found at i:102602 original size:16 final size:16
Alignment explanation
Indices: 102573--102608 Score: 56
Period size: 16 Copynumber: 2.3 Consensus size: 16
102563 TAATTAACCA
102573 AAAT-TATTAAATATT
1 AAATATATTAAATATT
*
102588 AAATATATTATATATT
1 AAATATATTAAATATT
102604 AAATA
1 AAATA
102609 CATATTTTAA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
15 4 0.21
16 15 0.79
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (16 bp):
AAATATATTAAATATT
Found at i:104392 original size:2 final size:2
Alignment explanation
Indices: 104387--104432 Score: 92
Period size: 2 Copynumber: 23.0 Consensus size: 2
104377 AACCAGTTAG
104387 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
104429 AT AT
1 AT AT
104433 GAACAAATTC
Statistics
Matches: 44, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 44 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:111741 original size:28 final size:28
Alignment explanation
Indices: 111709--111789 Score: 128
Period size: 28 Copynumber: 2.9 Consensus size: 28
111699 ATGAGGAAGA
111709 AAGGAGAGAACGGGGGGAGGGGGGAGGG
1 AAGGAGAGAACGGGGGGAGGGGGGAGGG
*
111737 AAGGAGAGAACGAGGGGAGGGGGGAGGG
1 AAGGAGAGAACGGGGGGAGGGGGGAGGG
*
111765 AAGGAGAGAACGTGTGGG-GGGGGGA
1 AAGGAGAGAACG-GGGGGAGGGGGGA
111790 ATAGAGTTTA
Statistics
Matches: 49, Mismatches: 3, Indels: 2
0.91 0.06 0.04
Matches are distributed among these distances:
28 46 0.94
29 3 0.06
ACGTcount: A:0.30, C:0.04, G:0.64, T:0.02
Consensus pattern (28 bp):
AAGGAGAGAACGGGGGGAGGGGGGAGGG
Found at i:117503 original size:13 final size:13
Alignment explanation
Indices: 117485--117531 Score: 85
Period size: 13 Copynumber: 3.6 Consensus size: 13
117475 CATCCTCTTC
*
117485 CCCTCCGCAGCTT
1 CCCTCCTCAGCTT
117498 CCCTCCTCAGCTT
1 CCCTCCTCAGCTT
117511 CCCTCCTCAGCTT
1 CCCTCCTCAGCTT
117524 CCCTCCTC
1 CCCTCCTC
117532 TTAAACTTTT
Statistics
Matches: 33, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
13 33 1.00
ACGTcount: A:0.06, C:0.57, G:0.09, T:0.28
Consensus pattern (13 bp):
CCCTCCTCAGCTT
Found at i:118191 original size:23 final size:23
Alignment explanation
Indices: 118141--118205 Score: 87
Period size: 23 Copynumber: 2.8 Consensus size: 23
118131 CATTTAAATG
*
118141 ATAAACGAACACAA-ACGAACAAAC
1 ATAAACGAACACAATA--AATAAAC
*
118165 ATAAACGAACATAATAAATAAAC
1 ATAAACGAACACAATAAATAAAC
118188 ATAAACGAACACAATAAA
1 ATAAACGAACACAATAAA
118206 CGGACAACAC
Statistics
Matches: 37, Mismatches: 3, Indels: 3
0.86 0.07 0.07
Matches are distributed among these distances:
23 23 0.62
24 13 0.35
25 1 0.03
ACGTcount: A:0.65, C:0.18, G:0.06, T:0.11
Consensus pattern (23 bp):
ATAAACGAACACAATAAATAAAC
Found at i:118577 original size:43 final size:39
Alignment explanation
Indices: 118525--118620 Score: 113
Period size: 40 Copynumber: 2.4 Consensus size: 39
118515 TTCATGAACG
118525 TAAATGAACGAACAAGTCCTTTGTTCATGTTCGTTCATTAAA
1 TAAATGAACGAACAA-T-C-TTGTTCATGTTCGTTCATTAAA
* *
118567 TTAAACGAACGCAA-AATCTTGTTCATGTTCGTTCATTTAA
1 -TAAATGAACG-AACAATCTTGTTCATGTTCGTTCATTAAA
*
118607 TAAATAAACGAACA
1 TAAATGAACGAACA
118621 TAAACGAACT
Statistics
Matches: 47, Mismatches: 4, Indels: 8
0.80 0.07 0.14
Matches are distributed among these distances:
38 2 0.04
39 9 0.19
40 21 0.45
41 1 0.02
42 1 0.02
43 11 0.23
44 2 0.04
ACGTcount: A:0.38, C:0.17, G:0.12, T:0.33
Consensus pattern (39 bp):
TAAATGAACGAACAATCTTGTTCATGTTCGTTCATTAAA
Found at i:123390 original size:21 final size:21
Alignment explanation
Indices: 123361--123407 Score: 76
Period size: 21 Copynumber: 2.2 Consensus size: 21
123351 ATTCTGACTA
123361 TCGCATTGCGATTTTCCAAAT
1 TCGCATTGCGATTTTCCAAAT
* *
123382 TCGCGTTGCGATTTTCCTAAT
1 TCGCATTGCGATTTTCCAAAT
123403 TCGCA
1 TCGCA
123408 ATGCAACGCG
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
21 23 1.00
ACGTcount: A:0.19, C:0.26, G:0.17, T:0.38
Consensus pattern (21 bp):
TCGCATTGCGATTTTCCAAAT
Found at i:123434 original size:20 final size:20
Alignment explanation
Indices: 123410--123500 Score: 164
Period size: 20 Copynumber: 4.5 Consensus size: 20
123400 AATTCGCAAT
*
123410 GCAACGCGAATACGTAAATT
1 GCAACGCGAATACGTAAATC
123430 GCAACGCGAATACGTAAATC
1 GCAACGCGAATACGTAAATC
123450 GCAACGCGAATACGTAAATC
1 GCAACGCGAATACGTAAATC
123470 GCAACGCGAATACGTAAATC
1 GCAACGCGAATACGTAAATC
*
123490 ACAACGCGAAT
1 GCAACGCGAAT
123501 CTGACTATCG
Statistics
Matches: 69, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
20 69 1.00
ACGTcount: A:0.41, C:0.24, G:0.20, T:0.15
Consensus pattern (20 bp):
GCAACGCGAATACGTAAATC
Found at i:123514 original size:20 final size:20
Alignment explanation
Indices: 123491--123533 Score: 68
Period size: 20 Copynumber: 2.1 Consensus size: 20
123481 ACGTAAATCA
*
123491 CAACGCGAATCTGACTATCG
1 CAACGAGAATCTGACTATCG
*
123511 CAACGAGATTCTGACTATCG
1 CAACGAGAATCTGACTATCG
123531 CAA
1 CAA
123534 TACTGAATTT
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.33, C:0.28, G:0.19, T:0.21
Consensus pattern (20 bp):
CAACGAGAATCTGACTATCG
Found at i:124401 original size:24 final size:24
Alignment explanation
Indices: 124374--124427 Score: 90
Period size: 24 Copynumber: 2.2 Consensus size: 24
124364 GTATTCGAAA
124374 TTTGATCTTGGTCAATACCCGGAC
1 TTTGATCTTGGTCAATACCCGGAC
* *
124398 TTTGATCTTGGTCAATACTCGGAT
1 TTTGATCTTGGTCAATACCCGGAC
124422 TTTGAT
1 TTTGAT
124428 GATTTTTCAG
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
24 28 1.00
ACGTcount: A:0.20, C:0.19, G:0.20, T:0.41
Consensus pattern (24 bp):
TTTGATCTTGGTCAATACCCGGAC
Found at i:126842 original size:34 final size:34
Alignment explanation
Indices: 126799--126952 Score: 125
Period size: 34 Copynumber: 4.4 Consensus size: 34
126789 ACATTTCATT
126799 TGACTATCGCAACGCAGA-AATCGCAACGCGAATA
1 TGACTATCGCAACG-AGAGAATCGCAACGCGAATA
*
126833 TGACTATCGCAACACGGAAATGACTATCGCAACGCGGAAT-
1 TGACTATCGC-A-AC-GAGA-GA--ATCGCAACGC-GAATA
* *
126873 TGACTATCGAAACGAGAGAATCGCAATGCGAA-A
1 TGACTATCGCAACGAGAGAATCGCAACGCGAATA
** * * *
126906 TGAAAATCACAACGAGAGAATCGCAATGCGAAAA
1 TGACTATCGCAACGAGAGAATCGCAACGCGAATA
**
126940 TGAAAATCGCAAC
1 TGACTATCGCAAC
126953 ACGAATTTAG
Statistics
Matches: 101, Mismatches: 9, Indels: 20
0.78 0.07 0.15
Matches are distributed among these distances:
33 31 0.31
34 32 0.32
35 1 0.01
36 6 0.06
37 4 0.04
38 3 0.03
39 1 0.01
40 19 0.19
41 4 0.04
ACGTcount: A:0.42, C:0.22, G:0.21, T:0.15
Consensus pattern (34 bp):
TGACTATCGCAACGAGAGAATCGCAACGCGAATA
Found at i:126843 original size:20 final size:21
Alignment explanation
Indices: 126818--126886 Score: 99
Period size: 20 Copynumber: 3.4 Consensus size: 21
126808 CAACGCAGAA
126818 ATCGCAACGC-GAATATGACT
1 ATCGCAACGCGGAATATGACT
*
126838 ATCGCAACACGGAA-ATGACT
1 ATCGCAACGCGGAATATGACT
126858 ATCGCAACGCGGAAT-TGACT
1 ATCGCAACGCGGAATATGACT
*
126878 ATCGAAACG
1 ATCGCAACG
126887 AGAGAATCGC
Statistics
Matches: 44, Mismatches: 3, Indels: 4
0.86 0.06 0.08
Matches are distributed among these distances:
20 41 0.93
21 3 0.07
ACGTcount: A:0.36, C:0.25, G:0.22, T:0.17
Consensus pattern (21 bp):
ATCGCAACGCGGAATATGACT
Found at i:126922 original size:33 final size:34
Alignment explanation
Indices: 126883--126952 Score: 124
Period size: 33 Copynumber: 2.1 Consensus size: 34
126873 TGACTATCGA
126883 AACGAGAGAATCGCAATGCG-AAATGAAAATCAC
1 AACGAGAGAATCGCAATGCGAAAATGAAAATCAC
*
126916 AACGAGAGAATCGCAATGCGAAAATGAAAATCGC
1 AACGAGAGAATCGCAATGCGAAAATGAAAATCAC
126950 AAC
1 AAC
126953 ACGAATTTAG
Statistics
Matches: 35, Mismatches: 1, Indels: 1
0.95 0.03 0.03
Matches are distributed among these distances:
33 20 0.57
34 15 0.43
ACGTcount: A:0.49, C:0.19, G:0.21, T:0.11
Consensus pattern (34 bp):
AACGAGAGAATCGCAATGCGAAAATGAAAATCAC
Found at i:127009 original size:14 final size:14
Alignment explanation
Indices: 126990--127043 Score: 54
Period size: 14 Copynumber: 3.5 Consensus size: 14
126980 CATTTTCGCA
126990 TTGCGATTCTCTCG
1 TTGCGATTCTCTCG
*
127004 TTGCGATTTTCATTTCG
1 TTGCGA--TTC-TCTCG
127021 CATTGCGATTCTCTCG
1 --TTGCGATTCTCTCG
127037 TTGCGAT
1 TTGCGAT
127044 AGTCATTTCC
Statistics
Matches: 33, Mismatches: 2, Indels: 10
0.73 0.04 0.22
Matches are distributed among these distances:
14 13 0.39
16 7 0.21
17 7 0.21
19 6 0.18
ACGTcount: A:0.11, C:0.24, G:0.20, T:0.44
Consensus pattern (14 bp):
TTGCGATTCTCTCG
Found at i:127011 original size:34 final size:34
Alignment explanation
Indices: 126968--127063 Score: 149
Period size: 33 Copynumber: 2.9 Consensus size: 34
126958 TTTAGTTTCG
126968 CGTTGCGATTTTCATTTTCGCATTGCGATTCTCT
1 CGTTGCGATTTTCATTTTCGCATTGCGATTCTCT
127002 CGTTGCGATTTTCA-TTTCGCATTGCGATTCTCT
1 CGTTGCGATTTTCATTTTCGCATTGCGATTCTCT
** * *
127035 CGTTGCGATAGTCATTTCCGCTTTGCGAT
1 CGTTGCGATTTTCATTTTCGCATTGCGAT
127064 AGTCTGTTTT
Statistics
Matches: 57, Mismatches: 4, Indels: 2
0.90 0.06 0.03
Matches are distributed among these distances:
33 31 0.54
34 26 0.46
ACGTcount: A:0.12, C:0.24, G:0.20, T:0.44
Consensus pattern (34 bp):
CGTTGCGATTTTCATTTTCGCATTGCGATTCTCT
Found at i:127188 original size:14 final size:14
Alignment explanation
Indices: 127169--127205 Score: 56
Period size: 14 Copynumber: 2.6 Consensus size: 14
127159 CATCAATTAA
127169 ACAAATCAACATTT
1 ACAAATCAACATTT
* *
127183 ACAAATCATCTTTT
1 ACAAATCAACATTT
127197 ACAAATCAA
1 ACAAATCAA
127206 TTAAACAATC
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
14 20 1.00
ACGTcount: A:0.49, C:0.22, G:0.00, T:0.30
Consensus pattern (14 bp):
ACAAATCAACATTT
Found at i:129111 original size:103 final size:102
Alignment explanation
Indices: 128927--129194 Score: 429
Period size: 103 Copynumber: 2.6 Consensus size: 102
128917 CCATATAATA
* *
128927 ATGT-CCATAAGGACCACATATCATTCCTTAAAAATCATATACATATGCCAATGATCAAGTATGT
1 ATGTCCCA-AAGGACCACATATCATTCCTTAAGAATCATATACATAT-CCAAGGATCAAGTATGT
*
128991 GTCTCACCAGACTTCACACATGTTCCAAAGAATACATAT
64 GTCTCACCAGACCTCACACATGTTCCAAAGAATACATAT
*
129030 ATGTCCCAAAGGACCACATATCATTCCTTAAGAATTATATACATATACCAAGGATCAAGTATGTG
1 ATGTCCCAAAGGACCACATATCATTCCTTAAGAATCATATACATAT-CCAAGGATCAAGTATGTG
129095 TCTCACCAGACCTCACACATGTTCCAAAGAATACATAT
65 TCTCACCAGACCTCACACATGTTCCAAAGAATACATAT
*
129133 ATGTCCCGAAGGACCACATATCATTCCTTAAGAATCATATAC----CCAAGGATCAAGTATGTGT
1 ATGTCCCAAAGGACCACATATCATTCCTTAAGAATCATATACATATCCAAGGATCAAGTATGTGT
129194 C
66 C
129195 CCTCACACAT
Statistics
Matches: 157, Mismatches: 7, Indels: 7
0.92 0.04 0.04
Matches are distributed among these distances:
98 20 0.13
103 134 0.85
104 3 0.02
ACGTcount: A:0.37, C:0.24, G:0.12, T:0.27
Consensus pattern (102 bp):
ATGTCCCAAAGGACCACATATCATTCCTTAAGAATCATATACATATCCAAGGATCAAGTATGTGT
CTCACCAGACCTCACACATGTTCCAAAGAATACATAT
Found at i:135993 original size:20 final size:21
Alignment explanation
Indices: 135968--136008 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
135958 GACTTCACAC
135968 ATGTTCC-AAAGAATACATAT
1 ATGTTCCGAAAGAATACATAT
* *
135988 ATGTTCCGAAGGACTACATAT
1 ATGTTCCGAAAGAATACATAT
136009 CATTCCTTAA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
20 7 0.39
21 11 0.61
ACGTcount: A:0.39, C:0.17, G:0.15, T:0.29
Consensus pattern (21 bp):
ATGTTCCGAAAGAATACATAT
Found at i:136072 original size:103 final size:103
Alignment explanation
Indices: 135893--136213 Score: 543
Period size: 103 Copynumber: 3.1 Consensus size: 103
135883 TAATGTCCAT
*
135893 AAGGACCACATATCATTCCTTAAGAATCATATACATATGCCAAGGATCAAGTATGTGTCTCACCA
1 AAGGACCACATATCATTCCTTAAGAATCATATACATATACCAAGGATCAAGTATGTGTCTCACCA
* *
135958 GACTTCACACATGTTCCAAAGAATACATATATGTTCCG
66 GACCTCACACATGTTCCAAAGAATACATATATGTCCCG
* *
135996 AAGGACTACATATCATTCCTTAAGAATCATATACAAATACCAAGGATCAAGTATGTGTCTCACCA
1 AAGGACCACATATCATTCCTTAAGAATCATATACATATACCAAGGATCAAGTATGTGTCTCACCA
*
136061 GACCTCACACATGTTCTAAAGAATACATATATGTCCCG
66 GACCTCACACATGTTCCAAAGAATACATATATGTCCCG
* *
136099 AATGACCACATATAATTCCTTAAGAATCATATACATATACCAAGGATCAAGTATGTGTCTCACCA
1 AAGGACCACATATCATTCCTTAAGAATCATATACATATACCAAGGATCAAGTATGTGTCTCACCA
* *
136164 GACCTCACACATATTCCAAAGAATACATATATGTCTCG
66 GACCTCACACATGTTCCAAAGAATACATATATGTCCCG
*
136202 AATGACCACATA
1 AAGGACCACATA
136214 GACCCTCTGC
Statistics
Matches: 205, Mismatches: 13, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
103 205 1.00
ACGTcount: A:0.38, C:0.23, G:0.12, T:0.26
Consensus pattern (103 bp):
AAGGACCACATATCATTCCTTAAGAATCATATACATATACCAAGGATCAAGTATGTGTCTCACCA
GACCTCACACATGTTCCAAAGAATACATATATGTCCCG
Found at i:138517 original size:20 final size:20
Alignment explanation
Indices: 138494--138592 Score: 171
Period size: 20 Copynumber: 5.0 Consensus size: 20
138484 AAATCGTAAC
*
138494 GCGAAAATGACTACCGCAAT
1 GCGAAAATGACTATCGCAAT
138514 GCGAAAATGACTATCGCAAT
1 GCGAAAATGACTATCGCAAT
138534 GCGAAAATGACTATCGCAAT
1 GCGAAAATGACTATCGCAAT
138554 GCGAAAATGACTATCGCAAT
1 GCGAAAATGACTATCGCAAT
**
138574 GCGAATTTGACTATCGCAA
1 GCGAAAATGACTATCGCAA
138593 CGAGAGAATC
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
20 76 1.00
ACGTcount: A:0.38, C:0.21, G:0.20, T:0.20
Consensus pattern (20 bp):
GCGAAAATGACTATCGCAAT
Found at i:138661 original size:34 final size:37
Alignment explanation
Indices: 138618--138713 Score: 117
Period size: 40 Copynumber: 2.6 Consensus size: 37
138608 GCGATTTTCA
138618 TTTCGCATTGCGAT-TC-TTTCG-TTGCGATAGTCAT
1 TTTCGCATTGCGATATCATTTCGATTGCGATAGTCAT
*
138652 TTTCGCATTGCGATAGTCATTTTCGCATTGTGATAGTCAT
1 TTTCGCATTGCGATA-TCA-TTTCG-ATTGCGATAGTCAT
*
138692 TTTCGCATTGTGATAGTCATTT
1 TTTCGCATTGCGATA-TCATTT
138714 TCGCGTTGCG
Statistics
Matches: 54, Mismatches: 2, Indels: 7
0.86 0.03 0.11
Matches are distributed among these distances:
34 14 0.26
36 2 0.04
38 5 0.09
39 3 0.06
40 30 0.56
ACGTcount: A:0.18, C:0.18, G:0.20, T:0.45
Consensus pattern (37 bp):
TTTCGCATTGCGATATCATTTCGATTGCGATAGTCAT
Found at i:138664 original size:20 final size:20
Alignment explanation
Indices: 138639--138815 Score: 150
Period size: 20 Copynumber: 9.5 Consensus size: 20
138629 GATTCTTTCG
138639 TTGCGATAGTCATTTTCGCA
1 TTGCGATAGTCATTTTCGCA
138659 TTGCGATAGTCATTTTCGCA
1 TTGCGATAGTCATTTTCGCA
*
138679 TTGTGATAGTCATTTTCGCA
1 TTGCGATAGTCATTTTCGCA
* *
138699 TTGTGATAGTCATTTTCGCG
1 TTGCGATAGTCATTTTCGCA
138719 TTGCGAT--T--TTGTT-G--
1 TTGCGATAGTCATT-TTCGCA
* *
138733 TTGCGAT-TTCCA-TTTCACA
1 TTGCGATAGT-CATTTTCGCA
*
138752 TTGCGAT--TC--TCTCG--
1 TTGCGATAGTCATTTTCGCA
* *
138766 TTACGATAGTCATTTTCGCG
1 TTGCGATAGTCATTTTCGCA
*
138786 TTGAGATAGTCATTTTCGCA
1 TTGCGATAGTCATTTTCGCA
138806 TTGCGATAGT
1 TTGCGATAGT
138816 AAACTATTCT
Statistics
Matches: 131, Mismatches: 12, Indels: 28
0.77 0.07 0.16
Matches are distributed among these distances:
14 13 0.10
15 1 0.01
16 10 0.08
17 4 0.03
18 6 0.05
19 7 0.05
20 90 0.69
ACGTcount: A:0.18, C:0.18, G:0.21, T:0.43
Consensus pattern (20 bp):
TTGCGATAGTCATTTTCGCA
Found at i:139365 original size:18 final size:18
Alignment explanation
Indices: 139342--139390 Score: 89
Period size: 18 Copynumber: 2.7 Consensus size: 18
139332 CGGGTCGATC
139342 AGGTGATGGCTCTGGGTG
1 AGGTGATGGCTCTGGGTG
139360 AGGTGATGGCTCTGGGTG
1 AGGTGATGGCTCTGGGTG
*
139378 AGGTGGTGGCTCT
1 AGGTGATGGCTCT
139391 CGAAGTGGTG
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
18 30 1.00
ACGTcount: A:0.10, C:0.12, G:0.49, T:0.29
Consensus pattern (18 bp):
AGGTGATGGCTCTGGGTG
Found at i:140742 original size:20 final size:20
Alignment explanation
Indices: 140719--140773 Score: 74
Period size: 20 Copynumber: 2.8 Consensus size: 20
140709 CTGAAACTTT
140719 AAATCGCAACACGAAAATGA
1 AAATCGCAACACGAAAATGA
*
140739 AAATTGCAACACGAAAATGA
1 AAATCGCAACACGAAAATGA
** *
140759 CTATCGCAACGCGAA
1 AAATCGCAACACGAA
140774 TTTGACTATC
Statistics
Matches: 30, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
20 30 1.00
ACGTcount: A:0.49, C:0.22, G:0.16, T:0.13
Consensus pattern (20 bp):
AAATCGCAACACGAAAATGA
Found at i:141220 original size:22 final size:22
Alignment explanation
Indices: 141158--141223 Score: 98
Period size: 22 Copynumber: 3.0 Consensus size: 22
141148 TGATCGTGAA
*
141158 TGATTTCG-CTGGAGATGGAGAC
1 TGATTTCGTC-GGAGATGGGGAC
*
141180 TGATATCGTCGGAGATGGGGAC
1 TGATTTCGTCGGAGATGGGGAC
141202 TGATTTCGTCGGAGATGGGGAC
1 TGATTTCGTCGGAGATGGGGAC
141224 GGATGTCGCC
Statistics
Matches: 40, Mismatches: 3, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
22 39 0.98
23 1 0.03
ACGTcount: A:0.21, C:0.14, G:0.39, T:0.26
Consensus pattern (22 bp):
TGATTTCGTCGGAGATGGGGAC
Found at i:141455 original size:20 final size:20
Alignment explanation
Indices: 141430--141472 Score: 86
Period size: 20 Copynumber: 2.1 Consensus size: 20
141420 ATGCGCGTTA
141430 CGATTTACGTATTCGCATTG
1 CGATTTACGTATTCGCATTG
141450 CGATTTACGTATTCGCATTG
1 CGATTTACGTATTCGCATTG
141470 CGA
1 CGA
141473 ATTAGGAAAA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 23 1.00
ACGTcount: A:0.21, C:0.21, G:0.21, T:0.37
Consensus pattern (20 bp):
CGATTTACGTATTCGCATTG
Found at i:142091 original size:3 final size:3
Alignment explanation
Indices: 142083--142135 Score: 70
Period size: 3 Copynumber: 17.0 Consensus size: 3
142073 AAATTTAAAT
**
142083 TTA TTA TTA TTA TTA TTA AAA TTA TTA TTA TTA TTA TTA TATA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA T-TA TTA
142129 TTTA TTA
1 -TTA TTA
142136 AATATTACAA
Statistics
Matches: 44, Mismatches: 4, Indels: 4
0.85 0.08 0.08
Matches are distributed among these distances:
3 38 0.86
4 6 0.14
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (3 bp):
TTA
Found at i:142135 original size:14 final size:13
Alignment explanation
Indices: 142083--142142 Score: 63
Period size: 12 Copynumber: 4.8 Consensus size: 13
142073 AAATTTAAAT
142083 TTAT-TATTATTA
1 TTATATATTATTA
**
142095 TTAT-TAAAATTA
1 TTATATATTATTA
142107 TTAT-TATTATTA
1 TTATATATTATTA
142119 TTATATATTATTTA
1 TTATATATTA-TTA
*
142133 TTAAATATTA
1 TTATATATTA
142143 CAAGCCCAAG
Statistics
Matches: 41, Mismatches: 5, Indels: 2
0.85 0.10 0.04
Matches are distributed among these distances:
12 24 0.59
13 5 0.12
14 12 0.29
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (13 bp):
TTATATATTATTA
Found at i:142195 original size:21 final size:21
Alignment explanation
Indices: 142157--142196 Score: 55
Period size: 21 Copynumber: 1.9 Consensus size: 21
142147 CCCAAGACCC
*
142157 GGAGGCCCGTTTTACAAATAT
1 GGAGGCCCGTTATACAAATAT
142178 GGAGGCCCAGTTAT-CAAAT
1 GGAGGCCC-GTTATACAAAT
142197 TTCATACCCA
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
21 13 0.76
22 4 0.24
ACGTcount: A:0.30, C:0.20, G:0.25, T:0.25
Consensus pattern (21 bp):
GGAGGCCCGTTATACAAATAT
Found at i:144238 original size:31 final size:33
Alignment explanation
Indices: 144203--144264 Score: 83
Period size: 33 Copynumber: 1.9 Consensus size: 33
144193 ATAATTAAAC
144203 ATTATAAAAATTAT-A-ATTTAGTTTTATTTAA
1 ATTATAAAAATTATAATATTTAGTTTTATTTAA
* * *
144234 ATTATTAAAATTTTAATATTTATTTTTATTT
1 ATTATAAAAATTATAATATTTAGTTTTATTT
144265 TTTTAATATC
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
31 12 0.46
32 1 0.04
33 13 0.50
ACGTcount: A:0.40, C:0.00, G:0.02, T:0.58
Consensus pattern (33 bp):
ATTATAAAAATTATAATATTTAGTTTTATTTAA
Found at i:144925 original size:11 final size:11
Alignment explanation
Indices: 144875--144917 Score: 59
Period size: 11 Copynumber: 3.8 Consensus size: 11
144865 ATATACTTAT
144875 TATTTTTATAA
1 TATTTTTATAA
* *
144886 TATTTATATGTA
1 TATTTTTAT-AA
144898 TATTTTTATAA
1 TATTTTTATAA
144909 TATTTTTAT
1 TATTTTTAT
144918 TTTATTTTCA
Statistics
Matches: 27, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
11 18 0.67
12 9 0.33
ACGTcount: A:0.33, C:0.00, G:0.02, T:0.65
Consensus pattern (11 bp):
TATTTTTATAA
Found at i:154237 original size:22 final size:22
Alignment explanation
Indices: 154206--154260 Score: 101
Period size: 22 Copynumber: 2.5 Consensus size: 22
154196 ATCTACACTA
154206 TTCAAAGATGATAGATTCTCTT
1 TTCAAAGATGATAGATTCTCTT
*
154228 TTTAAAGATGATAGATTCTCTT
1 TTCAAAGATGATAGATTCTCTT
154250 TTCAAAGATGA
1 TTCAAAGATGA
154261 AAGCTTTATG
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
22 31 1.00
ACGTcount: A:0.35, C:0.11, G:0.15, T:0.40
Consensus pattern (22 bp):
TTCAAAGATGATAGATTCTCTT
Found at i:155136 original size:75 final size:75
Alignment explanation
Indices: 154939--155654 Score: 1209
Period size: 76 Copynumber: 9.5 Consensus size: 75
154929 CTATTTCCCA
154939 CATCTGTAAGTCCTGCAGTGCATGATGTTTCCAAAAAGCCTTCGGGAG-TTTTTAGATGTTTTCA
1 CATCTGTAAGTCCTGCAGTGCATGATGTTTCCAAAAAGCCTTCGGGAGCTTTTT-GATGTTTTCA
*
155003 AAGCCTTAGAGT
65 AA-CCTTAGGGT
155015 CATCTGTAAGTCCTGCAGTGCATGATGTTTCCAAAAAGCCTTCGGGAGCTTTTTGATGTTTTCAA
1 CATCTGTAAGTCCTGCAGTGCATGATGTTTCCAAAAAGCCTTCGGGAGCTTTTTGATGTTTTCAA
*
155080 ACCTTCGGGT
66 ACCTTAGGGT
*
155090 CATCTGTAAGTCCTGCAGTGCATGATGTTTCCAAAAAGCCTTCGGGAACTTTTTGATGTTTTCAA
1 CATCTGTAAGTCCTGCAGTGCATGATGTTTCCAAAAAGCCTTCGGGAGCTTTTTGATGTTTTCAA
155155 AGCCTTAGGGT
66 A-CCTTAGGGT
* *
155166 CATCTGTAAGTCCTGCAGTGCATAATGTTTACAAAAAGCCTTCGGGAGCTTTTTGATGTTTTCAA
1 CATCTGTAAGTCCTGCAGTGCATGATGTTTCCAAAAAGCCTTCGGGAGCTTTTTGATGTTTTCAA
155231 AGCCTTAGGGT
66 A-CCTTAGGGT
155242 CATCTGTAAGTCCTGCAGTGCATGATGTTTCCAAAAAGCCTTCGGGAGCTTTTTGATGTTTTCAA
1 CATCTGTAAGTCCTGCAGTGCATGATGTTTCCAAAAAGCCTTCGGGAGCTTTTTGATGTTTTCAA
*
155307 ACCTTCGGGT
66 ACCTTAGGGT
* **
155317 CATCTGTAAGTCCTACAGTGCATGATGTTTCCAAAAAGCCTTTAGGAGCTTTTTGATGTTTTCAA
1 CATCTGTAAGTCCTGCAGTGCATGATGTTTCCAAAAAGCCTTCGGGAGCTTTTTGATGTTTTC-A
155382 AACCTTAGGGT
65 AACCTTAGGGT
*
155393 CATCTGTAAGTCCTACAGTGCATGATGTTTCCAAAAAGCCTTCGGGAGCTTTTTGATGTTTTCAA
1 CATCTGTAAGTCCTGCAGTGCATGATGTTTCCAAAAAGCCTTCGGGAGCTTTTTGATGTTTTCAA
*
155458 ACCTTCGGGT
66 ACCTTAGGGT
*
155468 CATCTGTAAGTCCTACAGTGCATGATGTTTCCAAAAAGCCTTCGGGAGCTTTTTGATGTTTTCAA
1 CATCTGTAAGTCCTGCAGTGCATGATGTTTCCAAAAAGCCTTCGGGAGCTTTTTGATGTTTTCAA
155533 ACCTTAGGGT
66 ACCTTAGGGT
* * * *
155543 CATCTGTAAGTCCTACAGTGCATGATGTTTCTAAAAAGCCTTCAGGAGCTTTTAGATGTTTTCAA
1 CATCTGTAAGTCCTGCAGTGCATGATGTTTCCAAAAAGCCTTCGGGAGCTTTTTGATGTTTTCAA
155608 AGCCTTAGGGT
66 A-CCTTAGGGT
* *
155619 CATCTGTAAGTCCTTCAGTGCATGATGTTTTCAAAA
1 CATCTGTAAGTCCTGCAGTGCATGATGTTTCCAAAA
155655 CCTTTGGGTC
Statistics
Matches: 612, Mismatches: 24, Indels: 8
0.95 0.04 0.01
Matches are distributed among these distances:
75 288 0.47
76 319 0.52
77 5 0.01
ACGTcount: A:0.24, C:0.20, G:0.22, T:0.35
Consensus pattern (75 bp):
CATCTGTAAGTCCTGCAGTGCATGATGTTTCCAAAAAGCCTTCGGGAGCTTTTTGATGTTTTCAA
ACCTTAGGGT
Found at i:155213 original size:151 final size:151
Alignment explanation
Indices: 154939--155654 Score: 1222
Period size: 151 Copynumber: 4.7 Consensus size: 151
154929 CTATTTCCCA
154939 CATCTGTAAGTCCTGCAGTGCATGATGTTTCCAAAAAGCCTTCGGGAG-TTTTTAGATGTTTTCA
1 CATCTGTAAGTCCTGCAGTGCATGATGTTTCCAAAAAGCCTTCGGGAGCTTTTT-GATGTTTTCA
* *
155003 AAGCCTTAGAGTCATCTGTAAGTCCTGCAGTGCATGATGTTTCCAAAAAGCCTTCGGGAGCTTTT
65 AAGCCTTAGGGTCATCTGTAAGTCCTACAGTGCATGATGTTTCCAAAAAGCCTTCGGGAGCTTTT
*
155068 TGATGTTTTCAAACCTTCGGGT
130 TGATGTTTTCAAACCTTAGGGT
*
155090 CATCTGTAAGTCCTGCAGTGCATGATGTTTCCAAAAAGCCTTCGGGAACTTTTTGATGTTTTCAA
1 CATCTGTAAGTCCTGCAGTGCATGATGTTTCCAAAAAGCCTTCGGGAGCTTTTTGATGTTTTCAA
* * *
155155 AGCCTTAGGGTCATCTGTAAGTCCTGCAGTGCATAATGTTTACAAAAAGCCTTCGGGAGCTTTTT
66 AGCCTTAGGGTCATCTGTAAGTCCTACAGTGCATGATGTTTCCAAAAAGCCTTCGGGAGCTTTTT
155220 GATGTTTTCAAAGCCTTAGGGT
131 GATGTTTTCAAA-CCTTAGGGT
155242 CATCTGTAAGTCCTGCAGTGCATGATGTTTCCAAAAAGCCTTCGGGAGCTTTTTGATGTTTTCAA
1 CATCTGTAAGTCCTGCAGTGCATGATGTTTCCAAAAAGCCTTCGGGAGCTTTTTGATGTTTTCAA
* **
155307 A-CCTTCGGGTCATCTGTAAGTCCTACAGTGCATGATGTTTCCAAAAAGCCTTTAGGAGCTTTTT
66 AGCCTTAGGGTCATCTGTAAGTCCTACAGTGCATGATGTTTCCAAAAAGCCTTCGGGAGCTTTTT
155371 GATGTTTTCAAAACCTTAGGGT
131 GATGTTTTC-AAACCTTAGGGT
*
155393 CATCTGTAAGTCCTACAGTGCATGATGTTTCCAAAAAGCCTTCGGGAGCTTTTTGATGTTTTCAA
1 CATCTGTAAGTCCTGCAGTGCATGATGTTTCCAAAAAGCCTTCGGGAGCTTTTTGATGTTTTCAA
*
155458 A-CCTTCGGGTCATCTGTAAGTCCTACAGTGCATGATGTTTCCAAAAAGCCTTCGGGAGCTTTTT
66 AGCCTTAGGGTCATCTGTAAGTCCTACAGTGCATGATGTTTCCAAAAAGCCTTCGGGAGCTTTTT
155522 GATGTTTTCAAACCTTAGGGT
131 GATGTTTTCAAACCTTAGGGT
* * * *
155543 CATCTGTAAGTCCTACAGTGCATGATGTTTCTAAAAAGCCTTCAGGAGCTTTTAGATGTTTTCAA
1 CATCTGTAAGTCCTGCAGTGCATGATGTTTCCAAAAAGCCTTCGGGAGCTTTTTGATGTTTTCAA
* *
155608 AGCCTTAGGGTCATCTGTAAGTCCTTCAGTGCATGATGTTTTCAAAA
66 AGCCTTAGGGTCATCTGTAAGTCCTACAGTGCATGATGTTTCCAAAA
155655 CCTTTGGGTC
Statistics
Matches: 540, Mismatches: 21, Indels: 8
0.95 0.04 0.01
Matches are distributed among these distances:
150 75 0.14
151 384 0.71
152 81 0.15
ACGTcount: A:0.24, C:0.20, G:0.22, T:0.35
Consensus pattern (151 bp):
CATCTGTAAGTCCTGCAGTGCATGATGTTTCCAAAAAGCCTTCGGGAGCTTTTTGATGTTTTCAA
AGCCTTAGGGTCATCTGTAAGTCCTACAGTGCATGATGTTTCCAAAAAGCCTTCGGGAGCTTTTT
GATGTTTTCAAACCTTAGGGT
Found at i:155649 original size:45 final size:45
Alignment explanation
Indices: 155597--155697 Score: 166
Period size: 45 Copynumber: 2.2 Consensus size: 45
155587 GGAGCTTTTA
* *
155597 GATGTTTTCAAAGCCTTAGGGTCATCTGTAAGTCCTTCAGTGCAT
1 GATGTTTTCAAAACCTTAGGGTCATCTGTAAGCCCTTCAGTGCAT
*
155642 GATGTTTTCAAAACCTTTGGGTCATCTGTAAGCCCTTCAGTGCAT
1 GATGTTTTCAAAACCTTAGGGTCATCTGTAAGCCCTTCAGTGCAT
*
155687 GGTGTTTTCAA
1 GATGTTTTCAA
155698 CATTTCCATC
Statistics
Matches: 52, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
45 52 1.00
ACGTcount: A:0.22, C:0.20, G:0.22, T:0.37
Consensus pattern (45 bp):
GATGTTTTCAAAACCTTAGGGTCATCTGTAAGCCCTTCAGTGCAT
Found at i:155840 original size:3 final size:3
Alignment explanation
Indices: 155832--155922 Score: 121
Period size: 3 Copynumber: 30.0 Consensus size: 3
155822 AAATTTAAAT
** * *
155832 TTA TTA TTA TTA TTA TTA AAA TTA TTA TTA TTA TTA TTA -AA ATA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
155879 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TATA TTA TTTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA T-TA TTA -TTA TTA
155923 AATATTACAA
Statistics
Matches: 78, Mismatches: 7, Indels: 6
0.86 0.08 0.07
Matches are distributed among these distances:
2 1 0.01
3 71 0.91
4 6 0.08
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (3 bp):
TTA
Found at i:158004 original size:31 final size:33
Alignment explanation
Indices: 157969--158030 Score: 83
Period size: 33 Copynumber: 1.9 Consensus size: 33
157959 ATAATTAAAC
157969 ATTATAAAAATTAT-A-ATTTAGTTTTATTTAA
1 ATTATAAAAATTATAATATTTAGTTTTATTTAA
* * *
158000 ATTATTAAAATTTTAATATTTATTTTTATTT
1 ATTATAAAAATTATAATATTTAGTTTTATTT
158031 TTTTAATATC
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
31 12 0.46
32 1 0.04
33 13 0.50
ACGTcount: A:0.40, C:0.00, G:0.02, T:0.58
Consensus pattern (33 bp):
ATTATAAAAATTATAATATTTAGTTTTATTTAA
Found at i:164120 original size:15 final size:15
Alignment explanation
Indices: 164100--164152 Score: 54
Period size: 16 Copynumber: 3.4 Consensus size: 15
164090 AATTAAACTT
164100 ATAAAATTATAATGA
1 ATAAAATTATAATGA
* *
164115 ATAAAAATAAAGTATTG-
1 AT-AAAAT-TA-TAATGA
164132 ATAAAATTATAATGA
1 ATAAAATTATAATGA
164147 ATAAAA
1 ATAAAA
164153 ATAAAGTATT
Statistics
Matches: 30, Mismatches: 4, Indels: 8
0.71 0.10 0.19
Matches are distributed among these distances:
14 4 0.13
15 9 0.30
16 10 0.33
17 3 0.10
18 4 0.13
ACGTcount: A:0.62, C:0.00, G:0.08, T:0.30
Consensus pattern (15 bp):
ATAAAATTATAATGA
Found at i:164136 original size:32 final size:32
Alignment explanation
Indices: 164100--164172 Score: 146
Period size: 32 Copynumber: 2.3 Consensus size: 32
164090 AATTAAACTT
164100 ATAAAATTATAATGAATAAAAATAAAGTATTG
1 ATAAAATTATAATGAATAAAAATAAAGTATTG
164132 ATAAAATTATAATGAATAAAAATAAAGTATTG
1 ATAAAATTATAATGAATAAAAATAAAGTATTG
164164 ATAAAATTA
1 ATAAAATTA
164173 AAAAGTAAAT
Statistics
Matches: 41, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 41 1.00
ACGTcount: A:0.60, C:0.00, G:0.08, T:0.32
Consensus pattern (32 bp):
ATAAAATTATAATGAATAAAAATAAAGTATTG
Found at i:164137 original size:16 final size:16
Alignment explanation
Indices: 164118--164170 Score: 56
Period size: 16 Copynumber: 3.3 Consensus size: 16
164108 ATAATGAATA
164118 AAAATAAAGTATTGAT
1 AAAATAAAGTATTGAT
* *
164134 AAAAT-TA-TAATGAAT
1 AAAATAAAGTATTG-AT
164149 AAAAATAAAGTATTGAT
1 -AAAATAAAGTATTGAT
164166 AAAAT
1 AAAAT
164171 TAAAAAGTAA
Statistics
Matches: 29, Mismatches: 4, Indels: 8
0.71 0.10 0.20
Matches are distributed among these distances:
14 4 0.14
15 3 0.10
16 15 0.52
17 3 0.10
18 4 0.14
ACGTcount: A:0.60, C:0.00, G:0.09, T:0.30
Consensus pattern (16 bp):
AAAATAAAGTATTGAT
Found at i:164137 original size:17 final size:17
Alignment explanation
Indices: 164115--164174 Score: 63
Period size: 17 Copynumber: 3.6 Consensus size: 17
164105 ATTATAATGA
164115 ATAAAAATAAAGTATTG
1 ATAAAAATAAAGTATTG
* *
164132 AT-AAAAT-TA-TAATG
1 ATAAAAATAAAGTATTG
164146 AATAAAAATAAAGTATTG
1 -ATAAAAATAAAGTATTG
*
164164 ATAAAATTAAA
1 ATAAAAATAAA
164175 AAGTAAATAT
Statistics
Matches: 34, Mismatches: 5, Indels: 8
0.72 0.11 0.17
Matches are distributed among these distances:
14 4 0.12
15 3 0.09
16 10 0.29
17 13 0.38
18 4 0.12
ACGTcount: A:0.62, C:0.00, G:0.08, T:0.30
Consensus pattern (17 bp):
ATAAAAATAAAGTATTG
Found at i:164804 original size:23 final size:23
Alignment explanation
Indices: 164778--164863 Score: 64
Period size: 23 Copynumber: 3.7 Consensus size: 23
164768 TTATTATTCT
*
164778 CGAACATGTTCGTTTAATGTTCA
1 CGAACATATTCGTTTAATGTTCA
* *
164801 CGAATATATTTGTTTATATGTTCA
1 CGAACATATTCGTTTA-ATGTTCA
* * * * ***
164825 CAAACGTGTTCATTTAGCATTCA
1 CGAACATATTCGTTTAATGTTCA
*
164848 CGAACATATTTGTTTA
1 CGAACATATTCGTTTA
164864 GTAGTCATCT
Statistics
Matches: 45, Mismatches: 17, Indels: 2
0.70 0.27 0.03
Matches are distributed among these distances:
23 28 0.62
24 17 0.38
ACGTcount: A:0.29, C:0.15, G:0.14, T:0.42
Consensus pattern (23 bp):
CGAACATATTCGTTTAATGTTCA
Found at i:167219 original size:2 final size:2
Alignment explanation
Indices: 167208--167238 Score: 55
Period size: 2 Copynumber: 16.0 Consensus size: 2
167198 ATATGCAACA
167208 AT AT -T AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
167239 CAGAAACACT
Statistics
Matches: 28, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
1 1 0.04
2 27 0.96
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
AT
Found at i:168243 original size:23 final size:23
Alignment explanation
Indices: 168217--168261 Score: 72
Period size: 23 Copynumber: 2.0 Consensus size: 23
168207 CACCACAGCT
*
168217 CGTATAATTGCACCGAAGTGCCG
1 CGTAGAATTGCACCGAAGTGCCG
*
168240 CGTAGAATTGCACCGTAGTGCC
1 CGTAGAATTGCACCGAAGTGCC
168262 ATATAATAAT
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
23 20 1.00
ACGTcount: A:0.24, C:0.27, G:0.27, T:0.22
Consensus pattern (23 bp):
CGTAGAATTGCACCGAAGTGCCG
Found at i:168482 original size:149 final size:149
Alignment explanation
Indices: 168229--168543 Score: 535
Period size: 149 Copynumber: 2.1 Consensus size: 149
168219 TATAATTGCA
*
168229 CCGAAGTG-CCGCGTAGAATTGCACCGTAGTGCCATATAATAATGTCCATAAGGACCACATAGAA
1 CCGAAG-GACCGCGTAGAATTGCACCGTAGTGCCATATAATAATATCCATAAGGACCACATAGAA
**
168293 TTCCTTAAGAATCATATACATATGCTAGGGATCAAGTATGTGTCTTTCAAGACTTCACACATGTT
65 TTCCTTAAGAATCATATACATATGCTAGGGATCAAGTATGTGTCTCACAAGACTTCACACATGTT
*
168358 CCACAGAATATATATATATC
130 CCAAAGAATATATATATATC
* *
168378 CCGAAGGACCGTGTAGAATTGCACCGTAGTGCCATATAATGATATCCATAAGGACCACATAGAAT
1 CCGAAGGACCGCGTAGAATTGCACCGTAGTGCCATATAATAATATCCATAAGGACCACATAGAAT
*
168443 TCCTTAAGAATCATATACATATGCTAGGGATCATA-TATGTGTCTCACCAGACTTCACACATGTT
66 TCCTTAAGAATCATATACATATGCTAGGGATCA-AGTATGTGTCTCACAAGACTTCACACATGTT
168507 CCAAAGAATATATATATATC
130 CCAAAGAATATATATATATC
168527 CCGAAGGACCGCGTAGA
1 CCGAAGGACCGCGTAGA
168544 CCCTCGACTC
Statistics
Matches: 156, Mismatches: 8, Indels: 4
0.93 0.05 0.02
Matches are distributed among these distances:
148 1 0.01
149 154 0.99
150 1 0.01
ACGTcount: A:0.35, C:0.21, G:0.17, T:0.27
Consensus pattern (149 bp):
CCGAAGGACCGCGTAGAATTGCACCGTAGTGCCATATAATAATATCCATAAGGACCACATAGAAT
TCCTTAAGAATCATATACATATGCTAGGGATCAAGTATGTGTCTCACAAGACTTCACACATGTTC
CAAAGAATATATATATATC
Found at i:169278 original size:18 final size:18
Alignment explanation
Indices: 169257--169291 Score: 54
Period size: 18 Copynumber: 1.9 Consensus size: 18
169247 TCCCATCTAG
169257 CTTATC-TTATATGTTCAT
1 CTTATCATT-TATGTTCAT
169275 CTTATCATTTATGTTCA
1 CTTATCATTTATGTTCA
169292 AATCTCCTAG
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
18 14 0.88
19 2 0.12
ACGTcount: A:0.23, C:0.17, G:0.06, T:0.54
Consensus pattern (18 bp):
CTTATCATTTATGTTCAT
Found at i:169882 original size:64 final size:66
Alignment explanation
Indices: 169783--169907 Score: 193
Period size: 64 Copynumber: 1.9 Consensus size: 66
169773 TAATGAAGGT
* *
169783 ATGCATCGATGCACTACACCATGCATCGATGCATAAATCCTATTCGATG-TTTGTATTTAATGGG
1 ATGCATCGATGCACTACACCATGCATCGATACATAAATCCTATTCGATGTTTTCTATTTAATGGG
169847 G
66 G
*
169848 ATGCATCGATGCACT-C-CTTATGCATCGATACATAAATCCTATTCGATGTTTTCTATTTAA
1 ATGCATCGATGCACTACAC-CATGCATCGATACATAAATCCTATTCGATGTTTTCTATTTAA
169908 ATTCATGCAT
Statistics
Matches: 55, Mismatches: 3, Indels: 4
0.89 0.05 0.06
Matches are distributed among these distances:
63 1 0.02
64 29 0.53
65 25 0.45
ACGTcount: A:0.28, C:0.21, G:0.16, T:0.35
Consensus pattern (66 bp):
ATGCATCGATGCACTACACCATGCATCGATACATAAATCCTATTCGATGTTTTCTATTTAATGGG
G
Found at i:169916 original size:64 final size:64
Alignment explanation
Indices: 169783--169925 Score: 184
Period size: 64 Copynumber: 2.2 Consensus size: 64
169773 TAATGAAGGT
* * *
169783 ATGCATCGATGCACTACACCATGCATCGATGCATAAATCCTATTCGATGTTTGTATTTAATGGGG
1 ATGCATCGATGCACTACACCATGCATCGATACATAAATCCTATTCGATGTTTCTATTTAAT-GGC
*
169848 ATGCATCGATGCACT-C-CTTATGCATCGATACATAAATCCTATTCGATGTTTTCTATTTAAAT-
1 ATGCATCGATGCACTACAC-CATGCATCGATACATAAATCCTATTCGATG-TTTCTATTT-AATG
*
169910 TC
63 GC
169912 ATGCATCGATGCAC
1 ATGCATCGATGCAC
169926 CTTAAACAAT
Statistics
Matches: 70, Mismatches: 5, Indels: 7
0.85 0.06 0.09
Matches are distributed among these distances:
63 1 0.01
64 43 0.61
65 23 0.33
66 3 0.04
ACGTcount: A:0.28, C:0.22, G:0.16, T:0.34
Consensus pattern (64 bp):
ATGCATCGATGCACTACACCATGCATCGATACATAAATCCTATTCGATGTTTCTATTTAATGGC
Found at i:171825 original size:18 final size:18
Alignment explanation
Indices: 171769--171825 Score: 55
Period size: 18 Copynumber: 3.1 Consensus size: 18
171759 AACCAATAAT
*
171769 AATAAACATAAAATAATTG
1 AATAAA-ATAAAATAAATG
*
171788 GAT-AAA-AAAATGAAATTG
1 AATAAAATAAAAT-AAA-TG
171806 AATAAAATAAAATAAATG
1 AATAAAATAAAATAAATG
171824 AA
1 AA
171826 GATAAAATAT
Statistics
Matches: 31, Mismatches: 3, Indels: 9
0.72 0.07 0.21
Matches are distributed among these distances:
16 5 0.16
17 3 0.10
18 10 0.32
19 8 0.26
20 5 0.16
ACGTcount: A:0.67, C:0.02, G:0.09, T:0.23
Consensus pattern (18 bp):
AATAAAATAAAATAAATG
Found at i:172128 original size:34 final size:36
Alignment explanation
Indices: 172063--172136 Score: 98
Period size: 39 Copynumber: 2.0 Consensus size: 36
172053 GTTTTTGACA
*
172063 AATAATAAGAGGATTGGATTAATATGGACCCATCTCTAT
1 AATAATAAGAGGATTGG---AATATGAACCCATCTCTAT
172102 AATAATAAGAGGATTGG-AT-TGAACCCATCTCTAT
1 AATAATAAGAGGATTGGAATATGAACCCATCTCTAT
172136 A
1 A
172137 CTAAACAGAC
Statistics
Matches: 34, Mismatches: 1, Indels: 5
0.85 0.03 0.12
Matches are distributed among these distances:
34 15 0.44
35 2 0.06
39 17 0.50
ACGTcount: A:0.39, C:0.14, G:0.18, T:0.30
Consensus pattern (36 bp):
AATAATAAGAGGATTGGAATATGAACCCATCTCTAT
Found at i:176756 original size:29 final size:30
Alignment explanation
Indices: 176677--176783 Score: 121
Period size: 29 Copynumber: 3.6 Consensus size: 30
176667 CTTTTTCATT
* **
176677 TAAGTATCTAAAGTATTTTTTTTATCAAAA
1 TAAGTACCTAAAGTATTTTTTTGGTCAAAA
*
176707 TAAGTA-TTCAAAGTTATTTTTTTGGTCAAAA
1 TAAGTACCT-AAAG-TATTTTTTTGGTCAAAA
*
176738 TAAGTACCTAAAGTA-TTTTTTGGTCAAGA
1 TAAGTACCTAAAGTATTTTTTTGGTCAAAA
176767 T-AGATACCTAAAGTATT
1 TAAG-TACCTAAAGTATT
176784 CAATATTTTT
Statistics
Matches: 67, Mismatches: 5, Indels: 10
0.82 0.06 0.12
Matches are distributed among these distances:
28 2 0.03
29 26 0.39
30 13 0.19
31 25 0.37
32 1 0.01
ACGTcount: A:0.37, C:0.08, G:0.12, T:0.42
Consensus pattern (30 bp):
TAAGTACCTAAAGTATTTTTTTGGTCAAAA
Found at i:181530 original size:29 final size:30
Alignment explanation
Indices: 181486--181549 Score: 78
Period size: 30 Copynumber: 2.2 Consensus size: 30
181476 AAAGAGAAAT
181486 TAAATTTTAACATATTCAT-AAACATTTATA
1 TAAATTTTAACATATTCATAAAACATTTA-A
* * *
181516 TAAATTTT-ATATATTTATAAAATATTTAA
1 TAAATTTTAACATATTCATAAAACATTTAA
181545 TAAAT
1 TAAAT
181550 GATTATTTTA
Statistics
Matches: 30, Mismatches: 3, Indels: 3
0.83 0.08 0.08
Matches are distributed among these distances:
29 14 0.47
30 16 0.53
ACGTcount: A:0.48, C:0.05, G:0.00, T:0.47
Consensus pattern (30 bp):
TAAATTTTAACATATTCATAAAACATTTAA
Found at i:181998 original size:29 final size:29
Alignment explanation
Indices: 181961--182075 Score: 110
Period size: 29 Copynumber: 4.0 Consensus size: 29
181951 AACCCAACCC
*
181961 ATAGGTCGCCATGCACTCCCAGCGACCTC
1 ATAGGTCGCCATGCACTCCCAGCGACCTA
* **
181990 CTAGGTCGCCATGCACTCCGGGCGACC-A
1 ATAGGTCGCCATGCACTCCCAGCGACCTA
*
182018 ATGAGGTCGTCATGCACT-CCAGGCGACC-A
1 AT-AGGTCGCCATGCACTCCCA-GCGACCTA
* * *
182047 AGGAGGTCGCCATGCACGCCCGGCGACCT
1 A-TAGGTCGCCATGCACTCCCAGCGACCT
182076 TGTCTCCTTG
Statistics
Matches: 69, Mismatches: 12, Indels: 9
0.77 0.13 0.10
Matches are distributed among these distances:
28 2 0.03
29 65 0.94
30 2 0.03
ACGTcount: A:0.20, C:0.37, G:0.28, T:0.15
Consensus pattern (29 bp):
ATAGGTCGCCATGCACTCCCAGCGACCTA
Found at i:182032 original size:58 final size:58
Alignment explanation
Indices: 181963--182074 Score: 145
Period size: 58 Copynumber: 1.9 Consensus size: 58
181953 CCCAACCCAT
** * * *
181963 AGGTCGCCATGCACTCCCA-GCGACCTCCTAGGTCGCCATGCACTCCGGGCGACCAATG
1 AGGTCGCCATGCACT-CCAGGCGACCAACGAGGTCGCCATGCACGCCCGGCGACCAATG
* *
182021 AGGTCGTCATGCACTCCAGGCGACCAAGGAGGTCGCCATGCACGCCCGGCGACC
1 AGGTCGCCATGCACTCCAGGCGACCAACGAGGTCGCCATGCACGCCCGGCGACC
182075 TTGTCTCCTT
Statistics
Matches: 46, Mismatches: 7, Indels: 2
0.84 0.13 0.04
Matches are distributed among these distances:
57 3 0.07
58 43 0.93
ACGTcount: A:0.20, C:0.38, G:0.29, T:0.13
Consensus pattern (58 bp):
AGGTCGCCATGCACTCCAGGCGACCAACGAGGTCGCCATGCACGCCCGGCGACCAATG
Found at i:188654 original size:30 final size:30
Alignment explanation
Indices: 188618--188679 Score: 124
Period size: 30 Copynumber: 2.1 Consensus size: 30
188608 ATTCAAAACA
188618 AAAAATCAAATTAAACCTCACAGATAAAAG
1 AAAAATCAAATTAAACCTCACAGATAAAAG
188648 AAAAATCAAATTAAACCTCACAGATAAAAG
1 AAAAATCAAATTAAACCTCACAGATAAAAG
188678 AA
1 AA
188680 GGGGAAAAAC
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 32 1.00
ACGTcount: A:0.61, C:0.16, G:0.06, T:0.16
Consensus pattern (30 bp):
AAAAATCAAATTAAACCTCACAGATAAAAG
Found at i:189869 original size:15 final size:15
Alignment explanation
Indices: 189849--189885 Score: 65
Period size: 15 Copynumber: 2.5 Consensus size: 15
189839 AGTATTTAAT
189849 GGGCGGGCGGATGTG
1 GGGCGGGCGGATGTG
189864 GGGCGGGCGGATGTG
1 GGGCGGGCGGATGTG
*
189879 GTGCGGG
1 GGGCGGG
189886 TAAGGTCTCA
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
15 21 1.00
ACGTcount: A:0.05, C:0.14, G:0.68, T:0.14
Consensus pattern (15 bp):
GGGCGGGCGGATGTG
Found at i:192639 original size:26 final size:26
Alignment explanation
Indices: 192603--192654 Score: 104
Period size: 26 Copynumber: 2.0 Consensus size: 26
192593 AGAGAAAGAA
192603 AAATAAGAGTAAAAAGTTTTTCTATT
1 AAATAAGAGTAAAAAGTTTTTCTATT
192629 AAATAAGAGTAAAAAGTTTTTCTATT
1 AAATAAGAGTAAAAAGTTTTTCTATT
192655 GTGTTTTATT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.46, C:0.04, G:0.12, T:0.38
Consensus pattern (26 bp):
AAATAAGAGTAAAAAGTTTTTCTATT
Found at i:192817 original size:21 final size:22
Alignment explanation
Indices: 192791--192834 Score: 63
Period size: 21 Copynumber: 2.0 Consensus size: 22
192781 TCAGTACAGG
*
192791 GAGTATCGATACT-CTTTTAAT
1 GAGTATCAATACTACTTTTAAT
192812 GAGTATCAATACTACCTTTTAAT
1 GAGTATCAATACTA-CTTTTAAT
192835 TTTTAAATAA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
21 12 0.60
23 8 0.40
ACGTcount: A:0.32, C:0.16, G:0.11, T:0.41
Consensus pattern (22 bp):
GAGTATCAATACTACTTTTAAT
Found at i:193694 original size:25 final size:25
Alignment explanation
Indices: 193665--193713 Score: 80
Period size: 25 Copynumber: 2.0 Consensus size: 25
193655 AAAATACGTA
*
193665 TAAACAATAATCTGCTACAATACCG
1 TAAACAATAACCTGCTACAATACCG
*
193690 TAAACAGTAACCTGCTACAATACC
1 TAAACAATAACCTGCTACAATACC
193714 CGAAATGTTA
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
25 22 1.00
ACGTcount: A:0.43, C:0.27, G:0.08, T:0.22
Consensus pattern (25 bp):
TAAACAATAACCTGCTACAATACCG
Found at i:193768 original size:22 final size:22
Alignment explanation
Indices: 193743--193787 Score: 81
Period size: 22 Copynumber: 2.0 Consensus size: 22
193733 GTTTACAAAT
*
193743 AGGGAATCGATTCCCCTGCTAC
1 AGGGAACCGATTCCCCTGCTAC
193765 AGGGAACCGATTCCCCTGCTAC
1 AGGGAACCGATTCCCCTGCTAC
193787 A
1 A
193788 ATACTGCTAC
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.24, C:0.33, G:0.22, T:0.20
Consensus pattern (22 bp):
AGGGAACCGATTCCCCTGCTAC
Found at i:194350 original size:21 final size:21
Alignment explanation
Indices: 194301--194364 Score: 92
Period size: 21 Copynumber: 3.0 Consensus size: 21
194291 CATATGAAAT
* *
194301 TTGTCCCGAATGACCTGTGAA
1 TTGTCCCGAAGGACCTATGAA
*
194322 TATGTCCCGAAGGACCTATGAG
1 T-TGTCCCGAAGGACCTATGAA
194344 TTGTCCCGAAGGACCTATGAA
1 TTGTCCCGAAGGACCTATGAA
194365 ACCCTCGACT
Statistics
Matches: 38, Mismatches: 4, Indels: 2
0.86 0.09 0.05
Matches are distributed among these distances:
21 20 0.53
22 18 0.47
ACGTcount: A:0.27, C:0.23, G:0.25, T:0.25
Consensus pattern (21 bp):
TTGTCCCGAAGGACCTATGAA
Found at i:200626 original size:22 final size:22
Alignment explanation
Indices: 200601--200643 Score: 77
Period size: 22 Copynumber: 2.0 Consensus size: 22
200591 GTTTACAAAT
*
200601 AGGGAATCGATTCCCCTGCTAC
1 AGGGAACCGATTCCCCTGCTAC
200623 AGGGAACCGATTCCCCTGCTA
1 AGGGAACCGATTCCCCTGCTA
200644 TAGTACTGCT
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.23, C:0.33, G:0.23, T:0.21
Consensus pattern (22 bp):
AGGGAACCGATTCCCCTGCTAC
Found at i:201208 original size:21 final size:21
Alignment explanation
Indices: 201159--201222 Score: 101
Period size: 21 Copynumber: 3.0 Consensus size: 21
201149 CATATGAAAT
*
201159 TTGTCCCGAAGGACCTGTGAA
1 TTGTCCCGAAGGACCTATGAA
*
201180 TATGTCCCGAAGGACCTATGAG
1 T-TGTCCCGAAGGACCTATGAA
201202 TTGTCCCGAAGGACCTATGAA
1 TTGTCCCGAAGGACCTATGAA
201223 ACCCTCGACT
Statistics
Matches: 39, Mismatches: 3, Indels: 2
0.89 0.07 0.05
Matches are distributed among these distances:
21 20 0.51
22 19 0.49
ACGTcount: A:0.27, C:0.23, G:0.27, T:0.23
Consensus pattern (21 bp):
TTGTCCCGAAGGACCTATGAA
Found at i:201712 original size:20 final size:20
Alignment explanation
Indices: 201687--201724 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
201677 CATTTTCTTT
201687 TAGGGGGAATCGATTCCCCC
1 TAGGGGGAATCGATTCCCCC
* *
201707 TAGGGGGTATCGGTTCCC
1 TAGGGGGAATCGATTCCC
201725 TCTGTATAAT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.16, C:0.26, G:0.34, T:0.24
Consensus pattern (20 bp):
TAGGGGGAATCGATTCCCCC
Found at i:206169 original size:9 final size:9
Alignment explanation
Indices: 206136--206185 Score: 61
Period size: 9 Copynumber: 5.8 Consensus size: 9
206126 ACAAATATAT
206136 TAAAAATA-
1 TAAAAATAC
206144 TAAAAAATAC
1 T-AAAAATAC
206154 TAAAAATAC
1 TAAAAATAC
206163 TAAAAATA-
1 TAAAAATAC
*
206171 -GAAAATAC
1 TAAAAATAC
206179 TAAAAAT
1 TAAAAAT
206186 TTCCTAGTAT
Statistics
Matches: 36, Mismatches: 2, Indels: 7
0.80 0.04 0.16
Matches are distributed among these distances:
7 6 0.17
8 1 0.03
9 28 0.78
10 1 0.03
ACGTcount: A:0.70, C:0.06, G:0.02, T:0.22
Consensus pattern (9 bp):
TAAAAATAC
Found at i:207941 original size:18 final size:18
Alignment explanation
Indices: 207907--207952 Score: 53
Period size: 18 Copynumber: 2.7 Consensus size: 18
207897 ATTTTCTTAG
207907 ATATTTTTTTATCTTTTA
1 ATATTTTTTTATCTTTTA
*
207925 ATATATTTTTTA-GTTTT-
1 ATAT-TTTTTTATCTTTTA
207942 AT-TTTTTTTAT
1 ATATTTTTTTAT
207953 AGTTTGCGTT
Statistics
Matches: 25, Mismatches: 1, Indels: 6
0.78 0.03 0.19
Matches are distributed among these distances:
15 7 0.28
16 1 0.04
17 2 0.08
18 8 0.32
19 7 0.28
ACGTcount: A:0.22, C:0.02, G:0.02, T:0.74
Consensus pattern (18 bp):
ATATTTTTTTATCTTTTA
Found at i:211534 original size:21 final size:21
Alignment explanation
Indices: 211495--211534 Score: 55
Period size: 21 Copynumber: 1.9 Consensus size: 21
211485 ATTAAATAAT
*
211495 TTAATGAATAAAATTAAATGA
1 TTAATGAATAAAATAAAATGA
211516 TTAATG-ATCAAAATAAAAT
1 TTAATGAAT-AAAATAAAAT
211535 TTAGTTTTAA
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
20 2 0.12
21 15 0.88
ACGTcount: A:0.57, C:0.03, G:0.07, T:0.33
Consensus pattern (21 bp):
TTAATGAATAAAATAAAATGA
Found at i:212799 original size:67 final size:67
Alignment explanation
Indices: 212684--212816 Score: 212
Period size: 67 Copynumber: 2.0 Consensus size: 67
212674 GAAATGTCCA
* *
212684 AGTTGGTTTAACTAATCATATGTTCGAACAACTGCACCTGCATAGTATGTGCGTTGTTAATGGTT
1 AGTTGGTTTAACTAATCATATGTTCGAACAACTGCACCTACATAGTATGTGCATTGTTAATGGTT
212749 TG
66 TG
* * * *
212751 AGTTGGTTTAATTATTCATATGTTCGAACAACTGTACCTACATGGTATGTGCATTGTTAATGGTT
1 AGTTGGTTTAACTAATCATATGTTCGAACAACTGCACCTACATAGTATGTGCATTGTTAATGGTT
212816 T
66 T
212817 AAGAAAATTG
Statistics
Matches: 60, Mismatches: 6, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
67 60 1.00
ACGTcount: A:0.26, C:0.14, G:0.21, T:0.40
Consensus pattern (67 bp):
AGTTGGTTTAACTAATCATATGTTCGAACAACTGCACCTACATAGTATGTGCATTGTTAATGGTT
TG
Done.