Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01005456.1 Hibiscus syriacus cultivar Beakdansim tig00012495_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  46414

Tables:   1   

This is table  1  of  1  ( 21 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1953--1997
22
2.0
22
100
0
90
20
17
13
48
1.80
9536--9561
13
2.0
13
100
0
52
46
7
7
38
1.61
14988--15027
21
2.0
21
85
14
57
55
7
5
32
1.50
15391--15471
23
3.6
22
72
9
74
27
22
24
25
2.00
18855--19034
65
2.8
63
84
9
222
28
17
22
30
1.97
19935--19978
15
2.8
16
86
13
56
65
2
0
31
1.05
22360--22390
15
2.1
15
93
0
53
29
19
3
48
1.64
23771--23805
14
2.5
14
90
0
52
34
8
40
17
1.80
24045--24520
182
2.6
182
88
2
697
42
14
15
28
1.85
24429--24479
20
2.5
20
81
9
59
54
7
13
23
1.65
26716--26755
21
1.9
21
89
0
62
40
12
30
17
1.86
26789--26854
33
2.0
33
85
5
89
33
1
43
21
1.62
28030--30022
4
499.2
4
97
0
3679
25
1
24
48
1.58
30597--30645
19
2.6
19
96
0
89
34
0
8
57
1.29
31647--32100
251
1.8
251
87
2
680
37
13
16
32
1.88
33672--34373
200
3.5
196
80
7
675
40
13
15
30
1.85
34390--34446
23
2.4
23
73
2
60
38
15
10
35
1.82
38947--38979
17
1.9
17
93
0
57
9
15
24
51
1.72
39756--39781
11
2.4
11
100
0
52
7
19
15
57
1.62
41506--41599
48
2.0
48
86
0
134
40
12
7
39
1.72
44154--44200
20
2.3
20
88
0
67
23
36
8
31
1.85

Tables:   1

The End!