Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01005457.1 Hibiscus syriacus cultivar Beakdansim tig00012498_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  56495

Tables:   1   

This is table  1  of  1  ( 30 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
5189--5237
20
2.4
20
86
10
64
55
4
0
40
1.19
5171--5213
11
3.8
11
78
6
50
58
2
0
39
1.11
5791--5851
20
2.9
19
79
16
50
40
0
8
50
1.32
5841--5884
2
22.0
2
100
0
88
50
0
0
50
1.00
5920--5957
17
2.3
17
90
4
60
44
0
10
44
1.38
5919--5961
17
2.5
17
84
3
59
41
0
11
46
1.40
5867--5964
42
2.3
40
77
17
101
45
2
7
44
1.42
9854--9989
68
2.0
68
100
0
272
35
14
22
27
1.93
10223--10280
2
28.5
2
84
10
73
50
3
1
44
1.29
25440--25540
39
2.5
40
90
1
159
22
24
7
44
1.79
25333--25654
152
2.1
152
90
3
497
26
21
12
39
1.89
25484--26013
226
2.4
226
95
0
929
26
21
14
38
1.92
25481--26002
113
4.6
113
86
2
728
26
21
14
37
1.92
31056--31093
14
2.7
14
87
0
58
57
0
13
28
1.36
31331--31415
43
2.0
44
83
2
109
31
24
11
31
1.91
33514--33581
35
1.9
35
87
3
100
48
2
4
44
1.38
35140--35183
3
16.0
3
82
17
51
68
2
0
29
1.02
35141--35189
16
3.1
15
80
8
62
71
2
0
26
0.97
35140--35193
19
2.8
19
86
8
65
70
3
0
25
1.04
44734--44811
35
2.2
35
97
2
147
43
10
19
26
1.83
45185--45224
18
2.3
18
83
8
57
25
5
2
67
1.23
45270--45303
2
17.5
2
87
6
52
44
0
0
55
0.99
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
45416--45445
2
15.0
2
100
0
60
50
0
0
50
1.00
45733--45812
40
2.0
40
83
9
103
31
5
6
57
1.45
53808--54557
105
7.3
104
84
9
923
34
22
19
23
1.97
53825--54309
104
4.9
92
82
12
426
35
22
19
23
1.96
55436--55470
14
2.4
15
90
4
54
22
5
2
68
1.24
55838--55915
42
1.9
39
84
7
102
17
28
6
47
1.72
56062--56125
5
13.2
5
72
6
51
15
9
1
73
1.16
56075--56125
14
3.5
15
81
7
61
13
9
1
74
1.15

Tables:   1

The End!