genome.fa.s5458.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01005458.1 Hibiscus syriacus cultivar Beakdansim tig00012499_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  63917

Tables:   1   

This is table  1  of  1  ( 27 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7087--7178	39	2.4	39	85	3	114	21	20	25	32	1.98
12247--12294	24	2.0	25	83	4	62	29	12	18	39	1.88
14164--14222	29	2.0	29	93	6	102	47	5	3	44	1.42
15694--15762	33	2.1	33	91	0	111	24	20	11	43	1.85
18007--18058	27	1.9	27	92	0	86	42	11	9	36	1.74
19233--19329	48	2.0	48	93	0	167	22	27	21	27	1.99
20731--20758	2	14.0	2	100	0	56	50	0	0	50	1.00
30889--30923	15	2.3	15	95	0	61	40	31	5	22	1.78
32353--32508	21	7.6	21	78	2	129	19	20	25	35	1.96
32374--32467	41	2.3	41	96	0	170	18	21	24	36	1.95
32349--32528	61	2.9	61	93	0	288	18	21	23	36	1.95
32500--32639	42	3.4	42	93	6	241	15	20	22	40	1.90
32459--32639	41	4.4	42	91	6	282	16	20	23	39	1.91
32459--32639	83	2.2	82	90	7	278	16	20	23	39	1.91
32395--32570	20	8.6	20	76	12	178	14	22	23	39	1.91
32538--32643	22	5.1	21	68	14	76	16	18	21	42	1.89
32720--32770	6	8.7	6	97	2	95	31	50	17	0	1.46
33315--33341	6	4.5	6	100	0	54	0	14	51	33	1.43
33446--33509	22	3.0	22	71	8	53	45	21	17	15	1.85
39022--39129	21	5.2	20	73	13	103	48	1	0	49	1.18
39045--39111	19	3.4	19	73	18	73	41	2	0	55	1.15
39023--39140	41	2.9	41	96	3	213	46	2	0	50	1.21
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39019--39136	22	5.6	22	71	20	110	48	1	0	49	1.17
42701--43065	132	2.8	131	84	2	453	32	10	16	41	1.81
45551--45579	14	2.1	14	100	0	58	44	20	6	27	1.77
51151--51213	15	4.2	15	85	0	54	23	33	12	30	1.92
51154--51210	30	1.9	30	85	0	78	26	33	10	29	1.90

Tables:   1

The End!