Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01005459.1 Hibiscus syriacus cultivar Beakdansim tig00012501_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  136884

Tables:   1   

This is table  1  of  1  ( 54 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
215--354
70
2.0
70
98
0
271
27
8
15
49
1.73
1423--1451
2
15.0
2
92
7
51
48
0
0
51
1.00
8298--8337
14
2.9
14
85
7
55
52
12
2
32
1.52
12601--12625
12
2.1
12
100
0
50
20
8
48
24
1.76
13184--13231
10
4.5
10
75
14
51
10
39
29
20
1.86
13270--13327
29
2.0
29
86
0
80
24
27
32
15
1.95
18212--18251
4
10.0
4
94
0
71
50
22
0
27
1.50
29938--29986
25
1.9
26
83
4
64
32
4
6
57
1.42
30604--30647
22
2.0
23
86
8
65
25
0
34
40
1.56
30610--30660
22
2.4
22
80
9
61
29
0
29
41
1.57
30930--30967
2
19.0
2
100
0
76
50
0
0
50
1.00
34637--34666
5
6.0
5
100
0
60
40
20
40
0
1.52
36605--36632
13
2.2
13
100
0
56
35
0
0
64
0.94
42082--42122
2
20.5
2
100
0
82
51
0
0
48
1.00
44813--44852
2
20.0
2
100
0
80
50
0
0
50
1.00
44888--44921
17
2.1
17
88
5
52
52
0
0
47
1.00
44908--45000
40
2.4
40
80
3
109
43
9
9
37
1.71
45165--45202
19
2.0
20
84
5
51
65
0
2
31
1.06
45144--45240
33
3.1
33
72
10
96
48
3
1
47
1.24
51689--51719
16
1.9
16
100
0
62
51
25
16
6
1.68
51674--51703
10
3.0
10
100
0
60
60
20
10
10
1.57
51786--51828
10
4.7
10
78
21
58
58
20
11
9
1.61
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
51790--51822
16
2.1
16
100
0
66
57
24
12
6
1.57
52564--52625
24
2.6
24
89
0
88
56
20
9
12
1.65
52594--52626
14
2.4
14
94
0
57
54
27
12
6
1.60
56746--56781
2
18.5
2
94
5
65
52
0
0
47
1.00
63952--64028
38
2.0
38
97
0
145
32
31
9
27
1.88
66949--66997
2
24.5
2
100
0
98
48
0
0
51
1.00
70918--70960
2
21.5
2
100
0
86
51
0
0
48
1.00
79091--79149
26
2.3
27
80
16
72
38
0
5
55
1.22
81847--81883
17
2.1
18
85
14
51
54
10
10
24
1.67
86117--86180
15
4.4
14
79
9
67
62
3
0
34
1.11
86117--86180
30
2.2
30
83
10
80
62
3
0
34
1.11
90465--90551
31
2.8
30
77
6
86
48
5
4
41
1.48
90777--90816
15
2.7
14
85
11
53
27
0
5
67
1.11
95102--95134
15
2.1
16
88
5
50
9
24
15
51
1.72
95884--95918
16
2.1
17
94
5
63
34
25
8
31
1.86
98427--98518
25
3.5
27
70
15
84
55
1
0
43
1.07
98976--99033
26
2.3
25
80
11
64
68
1
6
22
1.22
99467--99513
21
2.3
20
85
3
58
65
4
0
29
1.11
99556--99683
59
2.2
59
88
0
184
36
13
8
41
1.75
104700--104725
12
2.2
12
100
0
52
42
15
11
30
1.82
105635--105678
21
2.0
21
82
4
52
70
4
4
20
1.23
108089--108123
17
2.0
18
88
5
54
5
11
42
40
1.65
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
108208--108234
3
9.0
3
100
0
54
66
0
0
33
0.92
116654--116739
35
2.5
35
84
0
100
40
20
1
37
1.61
116708--116750
21
2.0
21
100
0
86
46
13
0
39
1.44
116873--116906
16
2.0
18
88
11
54
26
2
5
64
1.30
117370--117617
130
1.9
130
93
0
424
36
13
14
35
1.85
124029--124064
17
2.1
17
100
0
72
41
22
5
30
1.76
124513--124565
7
7.6
7
100
0
106
30
0
43
26
1.55
131119--131184
29
2.3
30
84
7
84
15
34
0
50
1.44
134090--134115
2
13.0
2
100
0
52
50
0
0
50
1.00
136215--136239
3
8.3
3
100
0
50
32
32
0
36
1.58

Tables:   1

The End!