genome.fa.s5460.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01005460.1 Hibiscus syriacus cultivar Beakdansim tig00012503_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  128298

Tables:   1   

This is table  1  of  1  ( 62 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2939--2985	21	2.2	22	81	11	62	17	0	55	27	1.42
2941--2966	12	2.2	12	100	0	52	15	0	57	26	1.38
3367--3438	5	14.4	5	78	21	80	59	20	0	19	1.37
3367--3431	19	3.5	19	85	10	73	60	20	0	20	1.37
3367--3438	23	3.3	23	80	16	82	59	20	0	19	1.37
3367--3436	37	1.9	35	86	13	97	60	20	0	20	1.37
3367--3438	18	3.9	18	85	10	94	59	20	0	19	1.37
4845--4888	18	2.4	18	85	11	63	25	25	20	29	1.99
8773--9404	325	1.9	326	97	0	1187	32	17	15	34	1.92
12933--12979	20	2.4	19	82	10	51	29	17	14	38	1.89
13120--13168	20	2.5	20	86	6	64	24	26	20	28	1.99
13157--13196	21	1.9	21	84	0	53	25	25	15	35	1.94
16216--16255	14	3.0	13	82	7	53	60	5	0	35	1.19
20311--20337	6	4.5	6	100	0	54	33	0	48	18	1.49
22387--22414	12	2.3	12	100	0	56	39	0	7	53	1.28
22977--23019	18	2.4	18	84	0	59	25	4	0	69	1.07
23145--23263	40	3.1	36	74	15	100	21	5	0	72	1.11
23215--23254	19	2.0	20	90	4	64	22	5	0	72	1.04
24737--24854	53	2.2	53	96	0	218	29	19	20	30	1.97
25187--25361	59	3.0	59	94	0	314	34	11	21	32	1.89
25317--25406	45	2.0	45	91	0	144	41	10	17	31	1.83
29865--29907	13	3.3	13	96	0	77	16	44	23	16	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32446--32564	24	5.0	24	85	4	150	26	14	19	39	1.90
32682--32776	43	2.2	43	98	0	181	15	10	36	36	1.82
36082--36199	53	2.2	53	90	3	193	30	18	18	32	1.95
36512--36780	59	4.6	59	96	0	493	34	11	23	30	1.90
37829--37854	13	2.0	13	100	0	52	7	23	0	69	1.14
39776--39813	20	1.9	20	94	0	67	26	23	18	31	1.97
45344--45577	123	1.9	123	82	3	292	39	22	13	24	1.90
45547--46149	270	2.2	270	89	2	901	34	22	16	26	1.95
47261--47303	19	2.3	19	87	0	59	23	9	0	67	1.19
47426--47524	6	16.5	6	74	17	73	15	4	1	79	0.93
47428--47490	32	2.0	32	84	12	85	15	1	1	80	0.86
47432--47523	44	2.1	44	85	4	123	15	4	1	79	0.95
47428--47518	16	5.9	15	71	13	69	16	3	1	79	0.93
47559--47640	31	2.8	29	77	14	87	30	4	2	62	1.29
49201--49232	9	3.7	9	91	8	57	43	0	0	56	0.99
50273--50314	2	21.5	2	95	4	77	50	0	0	50	1.00
50594--50628	18	1.9	19	88	11	56	25	0	0	74	0.82
52428--52460	13	2.5	13	86	13	50	0	15	0	84	0.61
54296--54718	64	6.6	64	92	1	677	35	21	12	30	1.91
54742--54952	116	1.8	116	86	2	307	38	23	13	24	1.91
55364--55553	7	27.0	7	96	3	330	42	0	0	57	1.03
56810--56865	27	2.1	26	83	9	69	23	8	0	67	1.18
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
61395--61447	26	2.0	26	82	7	63	24	15	28	32	1.95
64645--64696	21	2.5	21	96	0	95	30	5	30	32	1.81
66937--66983	23	2.0	23	83	0	58	36	27	19	17	1.93
66952--66996	23	2.0	23	90	0	72	31	22	26	20	1.98
67232--67291	31	2.0	30	83	9	77	38	25	1	35	1.66
67634--67735	45	2.3	45	84	3	125	27	12	23	36	1.91
73834--73884	23	2.2	23	100	0	102	29	29	25	15	1.96
74111--74174	31	2.1	31	85	8	87	40	21	1	35	1.63
79666--79716	26	2.0	26	84	0	66	27	21	23	27	1.99
79926--79967	19	2.2	19	87	8	59	11	4	0	83	0.79
103164--103188	8	3.1	8	100	0	50	12	0	0	88	0.53
105701--105752	19	2.8	18	80	8	68	53	0	0	46	1.00
111338--111393	21	2.7	21	82	0	76	28	25	21	25	1.99
114615--114652	12	3.2	12	81	11	51	23	0	2	73	0.95
114602--114652	20	2.4	22	72	21	54	25	0	3	70	1.04
119082--119733	319	2.0	325	87	6	941	40	7	5	45	1.58
120162--120195	16	2.1	17	88	5	52	32	0	2	64	1.08
121954--122003	2	25.0	2	100	0	100	50	0	0	50	1.00

Tables:   1

The End!