Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01005464.1 Hibiscus syriacus cultivar Beakdansim tig00012515_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 156960
ACGTcount: A:0.33, C:0.17, G:0.18, T:0.33
Found at i:979 original size:6 final size:6
Alignment explanation
Indices: 968--997 Score: 60
Period size: 6 Copynumber: 5.0 Consensus size: 6
958 CATCTATCAA
968 CCTTCC CCTTCC CCTTCC CCTTCC CCTTCC
1 CCTTCC CCTTCC CCTTCC CCTTCC CCTTCC
998 ATGTCCACTC
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 24 1.00
ACGTcount: A:0.00, C:0.67, G:0.00, T:0.33
Consensus pattern (6 bp):
CCTTCC
Found at i:3223 original size:14 final size:14
Alignment explanation
Indices: 3188--3223 Score: 54
Period size: 14 Copynumber: 2.6 Consensus size: 14
3178 GATTGGACTT
3188 AATATAAACAAACG
1 AATATAAACAAACG
**
3202 AACGTAAACAAACG
1 AATATAAACAAACG
3216 AATATAAA
1 AATATAAA
3224 TGAACAGATT
Statistics
Matches: 18, Mismatches: 4, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
14 18 1.00
ACGTcount: A:0.64, C:0.14, G:0.08, T:0.14
Consensus pattern (14 bp):
AATATAAACAAACG
Found at i:10200 original size:31 final size:31
Alignment explanation
Indices: 10102--10192 Score: 159
Period size: 31 Copynumber: 3.0 Consensus size: 31
10092 CAATTTAAGG
10102 CAAAATAGTTTTTGGACTTGAATTGAATTTA
1 CAAAATAGTTTTTGGACTTGAATTGAATTTA
*
10133 CAAAATGGTTTTTGGACTTGAATTGAATTTA
1 CAAAATAGTTTTTGGACTTGAATTGAATTTA
10164 CAAAAT-GTTTTTGGACTT-AATTGAATTTA
1 CAAAATAGTTTTTGGACTTGAATTGAATTTA
10193 TTCAAAATTT
Statistics
Matches: 59, Mismatches: 1, Indels: 2
0.95 0.02 0.03
Matches are distributed among these distances:
29 11 0.19
30 12 0.20
31 36 0.61
ACGTcount: A:0.34, C:0.07, G:0.16, T:0.43
Consensus pattern (31 bp):
CAAAATAGTTTTTGGACTTGAATTGAATTTA
Found at i:10287 original size:21 final size:21
Alignment explanation
Indices: 10261--10301 Score: 73
Period size: 21 Copynumber: 2.0 Consensus size: 21
10251 GTTTGAATAT
*
10261 TATGAAGGGGTATCGATTCCC
1 TATGAAGGGGTACCGATTCCC
10282 TATGAAGGGGTACCGATTCC
1 TATGAAGGGGTACCGATTCC
10302 TCCCATTCTG
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.24, C:0.20, G:0.29, T:0.27
Consensus pattern (21 bp):
TATGAAGGGGTACCGATTCCC
Found at i:10364 original size:21 final size:21
Alignment explanation
Indices: 10331--10370 Score: 55
Period size: 20 Copynumber: 1.9 Consensus size: 21
10321 TTTGAGTAGA
*
10331 AAAATCATTCCCAAACGGCTCC
1 AAAATCA-TCCCCAACGGCTCC
10353 AAAA-CATCCCCAACGGCT
1 AAAATCATCCCCAACGGCT
10371 ATATACGACT
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
20 11 0.65
21 2 0.12
22 4 0.24
ACGTcount: A:0.38, C:0.38, G:0.10, T:0.15
Consensus pattern (21 bp):
AAAATCATCCCCAACGGCTCC
Found at i:14966 original size:18 final size:20
Alignment explanation
Indices: 14918--14974 Score: 82
Period size: 20 Copynumber: 3.0 Consensus size: 20
14908 CGTCCAGTAT
14918 TTGTCCCGAAGGACCACTGA
1 TTGTCCCGAAGGACCACTGA
* *
14938 TTGTTCCGAAGAACCACT-A
1 TTGTCCCGAAGGACCACTGA
14957 -TGTCCCGAAGGACCACTG
1 TTGTCCCGAAGGACCACTG
14975 TATATCCCTC
Statistics
Matches: 32, Mismatches: 4, Indels: 3
0.82 0.10 0.08
Matches are distributed among these distances:
18 15 0.47
19 1 0.03
20 16 0.50
ACGTcount: A:0.26, C:0.30, G:0.23, T:0.21
Consensus pattern (20 bp):
TTGTCCCGAAGGACCACTGA
Found at i:15613 original size:63 final size:63
Alignment explanation
Indices: 15539--15659 Score: 188
Period size: 63 Copynumber: 1.9 Consensus size: 63
15529 ATTACTTAAC
*
15539 GGGTACATCGATGCACTACTTATGCATCGGTGCACGAATCACATTCGATGTTTTTATTCACTA
1 GGGTACATCGATGCACTACTTATGCATCGATGCACGAATCACATTCGATGTTTTTATTCACTA
* * * **
15602 GGGTGCATCGATGCACTCCTTATGCATCGATGCACTAATGGCATTCGATGTTTTTATT
1 GGGTACATCGATGCACTACTTATGCATCGATGCACGAATCACATTCGATGTTTTTATT
15660 TTATCAGAGT
Statistics
Matches: 52, Mismatches: 6, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
63 52 1.00
ACGTcount: A:0.23, C:0.21, G:0.21, T:0.35
Consensus pattern (63 bp):
GGGTACATCGATGCACTACTTATGCATCGATGCACGAATCACATTCGATGTTTTTATTCACTA
Found at i:17720 original size:19 final size:19
Alignment explanation
Indices: 17696--17746 Score: 93
Period size: 19 Copynumber: 2.7 Consensus size: 19
17686 ATGTATTTTA
17696 TGCACCGATGCATCAGTAG
1 TGCACCGATGCATCAGTAG
17715 TGCACCGATGCATCAGTAG
1 TGCACCGATGCATCAGTAG
*
17734 TGCATCGATGCAT
1 TGCACCGATGCAT
17747 ACCCTTATTG
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
19 31 1.00
ACGTcount: A:0.25, C:0.25, G:0.25, T:0.24
Consensus pattern (19 bp):
TGCACCGATGCATCAGTAG
Found at i:18962 original size:31 final size:30
Alignment explanation
Indices: 18889--19010 Score: 111
Period size: 31 Copynumber: 3.9 Consensus size: 30
18879 AGAGTCGAGG
18889 GTATACCTATGTCTACGGAACATATGGACA
1 GTATACCTATGTCTACGGAACATATGGACA
* * *
18919 GAATTACTTATGTCTTTC-GAGACATATGGACA
1 GTA-TACCTATGTC-TACGGA-ACATATGGACA
* *
18951 GTATACCTATGTTCTAAGGAATATATGGACA
1 GTATACCTATG-TCTACGGAACATATGGACA
* * * *
18982 GTTTACCTAGGTTCTTCGGAACCTATGGA
1 GTATACCTATG-TCTACGGAACATATGGA
19011 GAGTTGCCGA
Statistics
Matches: 73, Mismatches: 14, Indels: 9
0.76 0.15 0.09
Matches are distributed among these distances:
30 2 0.03
31 52 0.71
32 19 0.26
ACGTcount: A:0.30, C:0.17, G:0.20, T:0.32
Consensus pattern (30 bp):
GTATACCTATGTCTACGGAACATATGGACA
Found at i:19053 original size:30 final size:30
Alignment explanation
Indices: 19002--19073 Score: 117
Period size: 30 Copynumber: 2.4 Consensus size: 30
18992 GTTCTTCGGA
* * *
19002 ACCTATGGAGAGTTGCCGAGGATCTTTATG
1 ACCTCTGGATAGTTACCGAGGATCTTTATG
19032 ACCTCTGGATAGTTACCGAGGATCTTTATG
1 ACCTCTGGATAGTTACCGAGGATCTTTATG
19062 ACCTCTGGATAG
1 ACCTCTGGATAG
19074 GTCCTTCGGG
Statistics
Matches: 39, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
30 39 1.00
ACGTcount: A:0.24, C:0.19, G:0.26, T:0.31
Consensus pattern (30 bp):
ACCTCTGGATAGTTACCGAGGATCTTTATG
Found at i:24737 original size:18 final size:18
Alignment explanation
Indices: 24714--24862 Score: 163
Period size: 18 Copynumber: 7.9 Consensus size: 18
24704 GTTCAGTATT
24714 TGTCCCGAAGGACCACTA
1 TGTCCCGAAGGACCACTA
*
24732 TGTCCCGGAGGACCACTGA
1 TGTCCCGAAGGACCACT-A
* *
24751 TTGTTCCGAAGAACCACTA
1 -TGTCCCGAAGGACCACTA
*
24770 TGTCCTGAAGGACCACTGA
1 TGTCCCGAAGGACCACT-A
* *
24789 TTGTTCCGAAGAACCACTA
1 -TGTCCCGAAGGACCACTA
24808 TGTCCCGAAGGACCACTGA
1 TGTCCCGAAGGACCACT-A
* *
24827 TTGTTCCGAAGAACCACTA
1 -TGTCCCGAAGGACCACTA
*
24846 TGTCTCGAAGGACCACT
1 TGTCCCGAAGGACCACT
24863 GTATATCCCT
Statistics
Matches: 108, Mismatches: 17, Indels: 12
0.79 0.12 0.09
Matches are distributed among these distances:
18 59 0.55
19 6 0.06
20 43 0.40
ACGTcount: A:0.28, C:0.29, G:0.22, T:0.21
Consensus pattern (18 bp):
TGTCCCGAAGGACCACTA
Found at i:24769 original size:38 final size:38
Alignment explanation
Indices: 24713--24863 Score: 257
Period size: 38 Copynumber: 4.0 Consensus size: 38
24703 CGTTCAGTAT
* * *
24713 TTGTCCCGAAGGACCACTATGTCCCGGAGGACCACTGA
1 TTGTTCCGAAGAACCACTATGTCCCGAAGGACCACTGA
*
24751 TTGTTCCGAAGAACCACTATGTCCTGAAGGACCACTGA
1 TTGTTCCGAAGAACCACTATGTCCCGAAGGACCACTGA
24789 TTGTTCCGAAGAACCACTATGTCCCGAAGGACCACTGA
1 TTGTTCCGAAGAACCACTATGTCCCGAAGGACCACTGA
*
24827 TTGTTCCGAAGAACCACTATGTCTCGAAGGACCACTG
1 TTGTTCCGAAGAACCACTATGTCCCGAAGGACCACTG
24864 TATATCCCTC
Statistics
Matches: 107, Mismatches: 6, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
38 107 1.00
ACGTcount: A:0.27, C:0.28, G:0.23, T:0.22
Consensus pattern (38 bp):
TTGTTCCGAAGAACCACTATGTCCCGAAGGACCACTGA
Found at i:25013 original size:21 final size:20
Alignment explanation
Indices: 24966--25020 Score: 58
Period size: 21 Copynumber: 2.6 Consensus size: 20
24956 CTATCACTTC
24966 TCATATAGCACATAATTTATT
1 TCATATA-CACATAATTTATT
*
24987 TCATATACACATGATTCT-TT
1 TCATATACACATAATT-TATT
*
25007 TCAATATTCACATA
1 TC-ATATACACATA
25021 TATGTATCAT
Statistics
Matches: 29, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
20 12 0.41
21 17 0.59
ACGTcount: A:0.36, C:0.18, G:0.04, T:0.42
Consensus pattern (20 bp):
TCATATACACATAATTTATT
Found at i:25495 original size:63 final size:63
Alignment explanation
Indices: 25428--25548 Score: 197
Period size: 63 Copynumber: 1.9 Consensus size: 63
25418 ATTCCTTAAC
*
25428 GGGTGCATCGATGCACTACTTATGCATCGGTGCACGAATCACATTCGATGTTTTTATTCAATG
1 GGGTGCATCGATGCACTACTTATGCATCGATGCACGAATCACATTCGATGTTTTTATTCAATG
* * **
25491 GGGTGCATCGATGCACTCCTTATGCATCGATGCACTAATGGCATTCGATGTTTTTATT
1 GGGTGCATCGATGCACTACTTATGCATCGATGCACGAATCACATTCGATGTTTTTATT
25549 TTATCAGAGT
Statistics
Matches: 53, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
63 53 1.00
ACGTcount: A:0.22, C:0.21, G:0.22, T:0.35
Consensus pattern (63 bp):
GGGTGCATCGATGCACTACTTATGCATCGATGCACGAATCACATTCGATGTTTTTATTCAATG
Found at i:25583 original size:21 final size:21
Alignment explanation
Indices: 25557--25632 Score: 143
Period size: 21 Copynumber: 3.6 Consensus size: 21
25547 TTTTATCAGA
25557 GTGCATCGATGCATATTGAAT
1 GTGCATCGATGCATATTGAAT
25578 GTGCATCGATGCATATTGAAT
1 GTGCATCGATGCATATTGAAT
25599 GTGCATCGATGCATATTGAAT
1 GTGCATCGATGCATATTGAAT
*
25620 GTTCATCGATGCA
1 GTGCATCGATGCA
25633 CATAGCCCAG
Statistics
Matches: 54, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
21 54 1.00
ACGTcount: A:0.28, C:0.16, G:0.24, T:0.33
Consensus pattern (21 bp):
GTGCATCGATGCATATTGAAT
Found at i:27175 original size:29 final size:29
Alignment explanation
Indices: 27141--27199 Score: 109
Period size: 29 Copynumber: 2.0 Consensus size: 29
27131 CCTAAATTAA
*
27141 TTTGATGTCATTGTTTACATCAATTTAGT
1 TTTGATGTCATTGCTTACATCAATTTAGT
27170 TTTGATGTCATTGCTTACATCAATTTAGT
1 TTTGATGTCATTGCTTACATCAATTTAGT
27199 T
1 T
27200 ATGTGAAAAT
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
29 29 1.00
ACGTcount: A:0.24, C:0.12, G:0.14, T:0.51
Consensus pattern (29 bp):
TTTGATGTCATTGCTTACATCAATTTAGT
Found at i:28792 original size:23 final size:25
Alignment explanation
Indices: 28750--28797 Score: 82
Period size: 23 Copynumber: 2.0 Consensus size: 25
28740 ATAAATCACC
28750 CCTCCCCTCTTCCCCGACCTTTCTG
1 CCTCCCCTCTTCCCCGACCTTTCTG
28775 CCTCCCCT-TT-CCCGACCTTTCTG
1 CCTCCCCTCTTCCCCGACCTTTCTG
28798 GTTCTAGCCT
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
23 13 0.57
24 2 0.09
25 8 0.35
ACGTcount: A:0.04, C:0.54, G:0.08, T:0.33
Consensus pattern (25 bp):
CCTCCCCTCTTCCCCGACCTTTCTG
Found at i:29696 original size:5 final size:5
Alignment explanation
Indices: 29682--29725 Score: 70
Period size: 5 Copynumber: 8.8 Consensus size: 5
29672 GTCCGTCCGT
* *
29682 CTCGT CTCGG CTCGG CACGG CTCGG CTCGG CTCGG CTCGG CTCG
1 CTCGG CTCGG CTCGG CTCGG CTCGG CTCGG CTCGG CTCGG CTCG
29726 TGGTCGAGGT
Statistics
Matches: 36, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
5 36 1.00
ACGTcount: A:0.02, C:0.41, G:0.36, T:0.20
Consensus pattern (5 bp):
CTCGG
Found at i:29738 original size:6 final size:6
Alignment explanation
Indices: 29727--30064 Score: 608
Period size: 6 Copynumber: 56.7 Consensus size: 6
29717 CTCGGCTCGT
29727 GGTCGA GGTCGA GGTCGA GGTCGA GGTCGA GGTCGA GGTCGA GGTCGA
1 GGTCGA GGTCGA GGTCGA GGTCGA GGTCGA GGTCGA GGTCGA GGTCGA
* * *
29775 GGTCGA GGTCGA GGTCGA GCTCG- GCTCGT GGTCGA GGTCGA GGTCGA
1 GGTCGA GGTCGA GGTCGA GGTCGA GGTCGA GGTCGA GGTCGA GGTCGA
29822 GGTCGA GGTCGA GGTCGA GGTCGA GGTCGA GGTCGA GGTCGA GGTCGA
1 GGTCGA GGTCGA GGTCGA GGTCGA GGTCGA GGTCGA GGTCGA GGTCGA
* * *
29870 GCTCG- GCTCGT GGTCGA GGTCGA GGTCGA GGTCGA GGTCGA GGTCGA
1 GGTCGA GGTCGA GGTCGA GGTCGA GGTCGA GGTCGA GGTCGA GGTCGA
29917 GGTCGA GGTCGA GGTCGA GGTCGA GGTCGA GGTCGA GGTCGA GGTCGA
1 GGTCGA GGTCGA GGTCGA GGTCGA GGTCGA GGTCGA GGTCGA GGTCGA
29965 GGTCGA GGTCGA GGTCGA GGTCGA GGTCGA GGTCGA GGTCGA GGTCGA
1 GGTCGA GGTCGA GGTCGA GGTCGA GGTCGA GGTCGA GGTCGA GGTCGA
30013 GGTCGA GGTCGA GGTCGA GGTCGA GGTCGA GGTCGA GGTCGA GGTCGA
1 GGTCGA GGTCGA GGTCGA GGTCGA GGTCGA GGTCGA GGTCGA GGTCGA
30061 GGTC
1 GGTC
30065 ATACGTGTCT
Statistics
Matches: 324, Mismatches: 6, Indels: 4
0.97 0.02 0.01
Matches are distributed among these distances:
5 10 0.03
6 314 0.97
ACGTcount: A:0.15, C:0.18, G:0.49, T:0.17
Consensus pattern (6 bp):
GGTCGA
Found at i:30363 original size:22 final size:22
Alignment explanation
Indices: 30338--30392 Score: 65
Period size: 22 Copynumber: 2.5 Consensus size: 22
30328 TCAGGAGTTA
* *
30338 CAGGAGTTATTTGATTTAATTT
1 CAGGAGTTATATGATATAATTT
* *
30360 CAGGGGTTACATGATATAATTT
1 CAGGAGTTATATGATATAATTT
*
30382 CGGGAGTTATA
1 CAGGAGTTATA
30393 ACAGCTGAAT
Statistics
Matches: 26, Mismatches: 7, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
22 26 1.00
ACGTcount: A:0.29, C:0.07, G:0.24, T:0.40
Consensus pattern (22 bp):
CAGGAGTTATATGATATAATTT
Found at i:33847 original size:20 final size:21
Alignment explanation
Indices: 33824--33864 Score: 57
Period size: 22 Copynumber: 2.0 Consensus size: 21
33814 GTTCATTTAC
33824 TGCTAAATG-GAACCATTCAG
1 TGCTAAATGCGAACCATTCAG
*
33844 TGCTGAATGCTGAACCATTCA
1 TGCTAAATGC-GAACCATTCA
33865 ACATTTAGCG
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
20 8 0.44
22 10 0.56
ACGTcount: A:0.32, C:0.22, G:0.20, T:0.27
Consensus pattern (21 bp):
TGCTAAATGCGAACCATTCAG
Found at i:34160 original size:18 final size:18
Alignment explanation
Indices: 34134--34176 Score: 52
Period size: 17 Copynumber: 2.4 Consensus size: 18
34124 CAGAGCCAAT
* *
34134 TCATACAGGGACTTTGAA
1 TCATTCAGGGACATTGAA
*
34152 TCATTCA-GGCCATTGAA
1 TCATTCAGGGACATTGAA
34169 TCATTCAG
1 TCATTCAG
34177 CGCTTAATCA
Statistics
Matches: 21, Mismatches: 3, Indels: 2
0.81 0.12 0.08
Matches are distributed among these distances:
17 15 0.71
18 6 0.29
ACGTcount: A:0.30, C:0.21, G:0.19, T:0.30
Consensus pattern (18 bp):
TCATTCAGGGACATTGAA
Found at i:38161 original size:12 final size:12
Alignment explanation
Indices: 38144--38174 Score: 53
Period size: 12 Copynumber: 2.6 Consensus size: 12
38134 TTTCCACTTT
38144 CATATTCATTTA
1 CATATTCATTTA
*
38156 CATATTCATTTT
1 CATATTCATTTA
38168 CATATTC
1 CATATTC
38175 CATGAAAATT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
12 18 1.00
ACGTcount: A:0.29, C:0.19, G:0.00, T:0.52
Consensus pattern (12 bp):
CATATTCATTTA
Found at i:39197 original size:20 final size:20
Alignment explanation
Indices: 39172--39209 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
39162 AGAATGCAAT
39172 GAGGGTA-CTGATACCCTAAA
1 GAGGGTATC-GATACCCTAAA
39192 GAGGGTATCGATACCCTA
1 GAGGGTATCGATACCCTA
39210 TAAAGGAAAA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
20 16 0.94
21 1 0.06
ACGTcount: A:0.32, C:0.21, G:0.26, T:0.21
Consensus pattern (20 bp):
GAGGGTATCGATACCCTAAA
Found at i:40060 original size:61 final size:62
Alignment explanation
Indices: 39958--40142 Score: 193
Period size: 61 Copynumber: 3.0 Consensus size: 62
39948 TGCACCAATC
* * *
39958 CATGCATCGATGCAC-CATGA-ATTAAATTG-AACATCGAATGCATTTCATGCATCGATGCA-TG
1 CATGCATCGATGCACTCAGGATATT---TTGAAACATCGAATGCATTTGATGCATCGATGCACAG
* *
40019 -GTGCATCGATGCACTGAGGAT-TTTATGAAAACATCGAATGCATTTGATGCATCGATGCACCAG
1 CATGCATCGATGCACTCAGGATATTT-TG-AAACATCGAATGCATTTGATGCATCGATGCA-CAG
* * *
40082 CCATGCATCGATGCACTCTGGCTATTTTGAAACATCGAATGCACTTGATGCATCGATGCAC
1 -CATGCATCGATGCACTCAGGATATTTTGAAACATCGAATGCATTTGATGCATCGATGCAC
40143 TCTTAGTGCA
Statistics
Matches: 104, Mismatches: 10, Indels: 18
0.79 0.08 0.14
Matches are distributed among these distances:
58 1 0.01
59 2 0.02
60 13 0.12
61 34 0.33
63 2 0.02
64 30 0.29
65 19 0.18
66 3 0.03
ACGTcount: A:0.30, C:0.22, G:0.21, T:0.28
Consensus pattern (62 bp):
CATGCATCGATGCACTCAGGATATTTTGAAACATCGAATGCATTTGATGCATCGATGCACAG
Found at i:40142 original size:17 final size:19
Alignment explanation
Indices: 40114--40162 Score: 57
Period size: 19 Copynumber: 2.6 Consensus size: 19
40104 TATTTTGAAA
40114 CATCGAATGCACT-TGA-TG
1 CATCG-ATGCACTCTGAGTG
*
40132 CATCGATGCACTCTTAGTG
1 CATCGATGCACTCTGAGTG
*
40151 CACCGATGCACT
1 CATCGATGCACT
40163 AAGGGTCCAA
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
17 7 0.26
18 7 0.26
19 13 0.48
ACGTcount: A:0.24, C:0.29, G:0.20, T:0.27
Consensus pattern (19 bp):
CATCGATGCACTCTGAGTG
Found at i:40158 original size:64 final size:63
Alignment explanation
Indices: 39987--40162 Score: 200
Period size: 64 Copynumber: 2.8 Consensus size: 63
39977 AATTAAATTG
* * *
39987 AACATCGAATGCATTTCATGCATCGATGCA--TGGTGCATCGATGCACTGAGGATTTTATGAA
1 AACATCGAATGCATTTGATGCATCGATGCACCTAGTGCATCGATGCACTCAGGATTTTATGAA
* *
40048 AACATCGAATGCATTTGATGCATCGATGCACC-AGCCATGCATCGATGCACTCTGGCTATTT-TG
1 AACATCGAATGCATTTGATGCATCGATGCACCTAG---TGCATCGATGCACTCAGGAT-TTTATG
40111 -A
62 AA
* *
40112 AACATCGAATGCACTTGATGCATCGATGCACTCTTAGTGCACCGATGCACT
1 AACATCGAATGCATTTGATGCATCGATGCAC-C-TAGTGCATCGATGCACT
40163 AAGGGTCCAA
Statistics
Matches: 99, Mismatches: 7, Indels: 15
0.82 0.06 0.12
Matches are distributed among these distances:
61 29 0.29
62 1 0.01
64 44 0.44
65 20 0.20
66 3 0.03
67 2 0.02
ACGTcount: A:0.28, C:0.23, G:0.21, T:0.28
Consensus pattern (63 bp):
AACATCGAATGCATTTGATGCATCGATGCACCTAGTGCATCGATGCACTCAGGATTTTATGAA
Found at i:47107 original size:23 final size:21
Alignment explanation
Indices: 47055--47116 Score: 81
Period size: 23 Copynumber: 2.9 Consensus size: 21
47045 TTTTGGTGCA
*
47055 GAGGGAATCGA-TCCCCCCTT
1 GAGGGAACCGATTCCCCCCTT
*
47075 GAGGGAACCGATTCCCCCTTT
1 GAGGGAACCGATTCCCCCCTT
47096 GAAGGGGAACCGATTCCCCCC
1 G-A-GGGAACCGATTCCCCCC
47117 CACAGGGGAA
Statistics
Matches: 36, Mismatches: 3, Indels: 3
0.86 0.07 0.07
Matches are distributed among these distances:
20 10 0.28
21 9 0.25
22 1 0.03
23 16 0.44
ACGTcount: A:0.21, C:0.35, G:0.26, T:0.18
Consensus pattern (21 bp):
GAGGGAACCGATTCCCCCCTT
Found at i:47532 original size:24 final size:24
Alignment explanation
Indices: 47505--47553 Score: 73
Period size: 24 Copynumber: 2.0 Consensus size: 24
47495 GAATTTTCAA
47505 AAAAAAAAT-TAAATTTTCGAAATT
1 AAAAAAAATGTAAATTTTC-AAATT
*
47529 AAAAAAAATGTTAATTTTCAAATT
1 AAAAAAAATGTAAATTTTCAAATT
47553 A
1 A
47554 TTGTGTTTTG
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
24 15 0.65
25 8 0.35
ACGTcount: A:0.57, C:0.04, G:0.04, T:0.35
Consensus pattern (24 bp):
AAAAAAAATGTAAATTTTCAAATT
Found at i:53718 original size:20 final size:20
Alignment explanation
Indices: 53693--53731 Score: 62
Period size: 20 Copynumber: 1.9 Consensus size: 20
53683 TTCAAAATAG
53693 TCAAATTTCAA-ATTCTAACA
1 TCAAA-TTCAATATTCTAACA
53713 TCAAATTCAATATTCTAAC
1 TCAAATTCAATATTCTAAC
53732 TTTCAATTCC
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
19 5 0.28
20 13 0.72
ACGTcount: A:0.44, C:0.21, G:0.00, T:0.36
Consensus pattern (20 bp):
TCAAATTCAATATTCTAACA
Found at i:54403 original size:22 final size:22
Alignment explanation
Indices: 54378--54960 Score: 762
Period size: 22 Copynumber: 26.5 Consensus size: 22
54368 ATAATAAATT
*
54378 TTTTAAAGTAAATCAATCCATA
1 TTTTAAAATAAATCAATCCATA
*
54400 TTTTAAAATAAATCAATTCATA
1 TTTTAAAATAAATCAATCCATA
**
54422 TTTTAAAATAAAAT-TTTCCATA
1 TTTTAAAAT-AAATCAATCCATA
54444 TTTTAAAATAAATCAATCCATA
1 TTTTAAAATAAATCAATCCATA
**
54466 TTTTAAAATAAAAT-TTTCCATA
1 TTTTAAAAT-AAATCAATCCATA
*
54488 TTTTAAAATAAATCAATTCATA
1 TTTTAAAATAAATCAATCCATA
54510 TTTTAAAATAAATCAATCCATA
1 TTTTAAAATAAATCAATCCATA
* *
54532 TTTTAAAATAAATTAATTCATA
1 TTTTAAAATAAATCAATCCATA
*
54554 TTTTAAAATAAATCTATCCATA
1 TTTTAAAATAAATCAATCCATA
54576 TTTTAAAATAAATCAATCCATA
1 TTTTAAAATAAATCAATCCATA
***
54598 TTTTAAAATAAATTTTTCCATA
1 TTTTAAAATAAATCAATCCATA
*
54620 TTTTAAAATAAATCAATCCGTA
1 TTTTAAAATAAATCAATCCATA
***
54642 TTTTAAAATAAATTTTTCCATA
1 TTTTAAAATAAATCAATCCATA
54664 TTTTAAAATAAATCAATCCATA
1 TTTTAAAATAAATCAATCCATA
**
54686 TTTTAAAATAAAAT-TTTCCATA
1 TTTTAAAAT-AAATCAATCCATA
54708 TTTTAAAATAAATCAATCCATA
1 TTTTAAAATAAATCAATCCATA
**
54730 TTTTAAAATAAAAT-TTTCCATA
1 TTTTAAAAT-AAATCAATCCATA
54752 TTTTAAAATAAATC-ATCCATA
1 TTTTAAAATAAATCAATCCATA
*** **
54773 TTTTAAAATAAATTTTTTTATA
1 TTTTAAAATAAATCAATCCATA
*
54795 TTTTAAAATAAATTAATCCATA
1 TTTTAAAATAAATCAATCCATA
***
54817 TTTTAAAATAAATGTTTCCATA
1 TTTTAAAATAAATCAATCCATA
54839 TTTTAAAATAAATCAATCCATA
1 TTTTAAAATAAATCAATCCATA
*
54861 TTTTAAAATAAATCAATCTATA
1 TTTTAAAATAAATCAATCCATA
54883 TTTTAAAATAAATCAATCCATA
1 TTTTAAAATAAATCAATCCATA
*** **
54905 TTTTAAAATAAATTTTTTTATA
1 TTTTAAAATAAATCAATCCATA
*
54927 TTTTAAAATAAATCAATTCATA
1 TTTTAAAATAAATCAATCCATA
54949 TTTTAAAATAAA
1 TTTTAAAATAAA
54961 ATTTTAAAAT
Statistics
Matches: 487, Mismatches: 65, Indels: 18
0.85 0.11 0.03
Matches are distributed among these distances:
21 35 0.07
22 436 0.90
23 16 0.03
ACGTcount: A:0.47, C:0.10, G:0.01, T:0.42
Consensus pattern (22 bp):
TTTTAAAATAAATCAATCCATA
Found at i:54442 original size:44 final size:44
Alignment explanation
Indices: 54394--54965 Score: 884
Period size: 44 Copynumber: 13.0 Consensus size: 44
54384 AGTAAATCAA
*
54394 TCCATATTTTAAAATAAATCAATTCATATTTTAAAATAAAATTT
1 TCCATATTTTAAAATAAATCAATCCATATTTTAAAATAAAATTT
54438 TCCATATTTTAAAATAAATCAATCCATATTTTAAAATAAAATTT
1 TCCATATTTTAAAATAAATCAATCCATATTTTAAAATAAAATTT
* **
54482 TCCATATTTTAAAATAAATCAATTCATATTTTAAAAT-AAATCAA
1 TCCATATTTTAAAATAAATCAATCCATATTTTAAAATAAAAT-TT
* * *
54526 TCCATATTTTAAAATAAATTAATTCATATTTTAAAAT-AAATCTA
1 TCCATATTTTAAAATAAATCAATCCATATTTTAAAATAAAAT-TT
*
54570 TCCATATTTTAAAATAAATCAATCCATATTTTAAAATAAATTTT
1 TCCATATTTTAAAATAAATCAATCCATATTTTAAAATAAAATTT
* *
54614 TCCATATTTTAAAATAAATCAATCCGTATTTTAAAATAAATTTT
1 TCCATATTTTAAAATAAATCAATCCATATTTTAAAATAAAATTT
54658 TCCATATTTTAAAATAAATCAATCCATATTTTAAAATAAAATTT
1 TCCATATTTTAAAATAAATCAATCCATATTTTAAAATAAAATTT
54702 TCCATATTTTAAAATAAATCAATCCATATTTTAAAATAAAATTT
1 TCCATATTTTAAAATAAATCAATCCATATTTTAAAATAAAATTT
*
54746 TCCATATTTTAAAATAAATC-ATCCATATTTTAAAATAAATTTT
1 TCCATATTTTAAAATAAATCAATCCATATTTTAAAATAAAATTT
** *
54789 TTTATATTTTAAAATAAATTAATCCATATTTTAAAAT-AAATGTT
1 TCCATATTTTAAAATAAATCAATCCATATTTTAAAATAAAAT-TT
**
54833 TCCATATTTTAAAATAAATCAATCCATATTTTAAAAT-AAATCAA
1 TCCATATTTTAAAATAAATCAATCCATATTTTAAAATAAAAT-TT
* *
54877 TCTATATTTTAAAATAAATCAATCCATATTTTAAAATAAATTTT
1 TCCATATTTTAAAATAAATCAATCCATATTTTAAAATAAAATTT
** *
54921 TTTATATTTTAAAATAAATCAATTCATATTTTAAAATAAAATTT
1 TCCATATTTTAAAATAAATCAATCCATATTTTAAAATAAAATTT
54965 T
1 T
54966 AAAATAGATT
Statistics
Matches: 492, Mismatches: 31, Indels: 10
0.92 0.06 0.02
Matches are distributed among these distances:
43 46 0.09
44 440 0.89
45 6 0.01
ACGTcount: A:0.47, C:0.10, G:0.00, T:0.43
Consensus pattern (44 bp):
TCCATATTTTAAAATAAATCAATCCATATTTTAAAATAAAATTT
Found at i:57981 original size:21 final size:20
Alignment explanation
Indices: 57927--57981 Score: 56
Period size: 21 Copynumber: 2.6 Consensus size: 20
57917 GTCGAACTCG
57927 AATTCAAATCAAATCAATTTA
1 AATT-AAATCAAATCAATTTA
* * *
57948 AATCAAAAGCAAATCAAATTTT
1 AAT-TAAATCAAATC-AATTTA
57970 AATTAAATCAAA
1 AATTAAATCAAA
57982 CTTCAACTGC
Statistics
Matches: 27, Mismatches: 5, Indels: 4
0.75 0.14 0.11
Matches are distributed among these distances:
21 19 0.70
22 8 0.30
ACGTcount: A:0.56, C:0.13, G:0.02, T:0.29
Consensus pattern (20 bp):
AATTAAATCAAATCAATTTA
Found at i:59821 original size:16 final size:18
Alignment explanation
Indices: 59799--59842 Score: 65
Period size: 16 Copynumber: 2.6 Consensus size: 18
59789 TGATTAAGCG
*
59799 CTGAATGATTCAAATA-T
1 CTGAATGATTCAAAGACT
59816 -TGAATGATTCAAAGACT
1 CTGAATGATTCAAAGACT
59833 CTGAATGATT
1 CTGAATGATT
59843 TGGCTCTGAA
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
16 14 0.58
17 1 0.04
18 9 0.38
ACGTcount: A:0.39, C:0.11, G:0.16, T:0.34
Consensus pattern (18 bp):
CTGAATGATTCAAAGACT
Found at i:64383 original size:31 final size:26
Alignment explanation
Indices: 64315--64376 Score: 124
Period size: 26 Copynumber: 2.4 Consensus size: 26
64305 AAAAAGCATT
64315 ATTAAAATAATACATATTATTTTTAA
1 ATTAAAATAATACATATTATTTTTAA
64341 ATTAAAATAATACATATTATTTTTAA
1 ATTAAAATAATACATATTATTTTTAA
64367 ATTAAAATAA
1 ATTAAAATAA
64377 CTTAATAATA
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 36 1.00
ACGTcount: A:0.53, C:0.03, G:0.00, T:0.44
Consensus pattern (26 bp):
ATTAAAATAATACATATTATTTTTAA
Found at i:66203 original size:31 final size:30
Alignment explanation
Indices: 66164--66221 Score: 82
Period size: 31 Copynumber: 1.9 Consensus size: 30
66154 AAAACTTAAT
66164 ATATTTAGTACATAAA-TTATCAGTTTTGGC
1 ATATTTAGTACATAAACTT-TCAGTTTTGGC
*
66194 ATATCTTAGTACCTAAACTTTCAGTTTT
1 ATAT-TTAGTACATAAACTTTCAGTTTT
66222 TCAATATTTA
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
30 4 0.16
31 19 0.76
32 2 0.08
ACGTcount: A:0.31, C:0.14, G:0.10, T:0.45
Consensus pattern (30 bp):
ATATTTAGTACATAAACTTTCAGTTTTGGC
Found at i:66945 original size:21 final size:21
Alignment explanation
Indices: 66920--66964 Score: 72
Period size: 21 Copynumber: 2.1 Consensus size: 21
66910 TCGAAACTAT
*
66920 GGAGCGGTTCAACCGGTTGGA
1 GGAGCGGTTCAACCGGGTGGA
*
66941 GGAGCGGTTCAACTGGGTGGA
1 GGAGCGGTTCAACCGGGTGGA
66962 GGA
1 GGA
66965 TCGGCTTGAT
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.20, C:0.16, G:0.47, T:0.18
Consensus pattern (21 bp):
GGAGCGGTTCAACCGGGTGGA
Found at i:71031 original size:15 final size:15
Alignment explanation
Indices: 71013--71041 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
71003 AAGATTTAAG
71013 TTAAAATCTTTATTT
1 TTAAAATCTTTATTT
71028 TTAAAATCTTTATT
1 TTAAAATCTTTATT
71042 CAAATCAGAT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.34, C:0.07, G:0.00, T:0.59
Consensus pattern (15 bp):
TTAAAATCTTTATTT
Found at i:71390 original size:20 final size:20
Alignment explanation
Indices: 71365--71416 Score: 77
Period size: 20 Copynumber: 2.6 Consensus size: 20
71355 TAAAACGGTT
*
71365 CGGTTCGGTTTAGTTTTAAA
1 CGGTTCGGTTTAGCTTTAAA
* *
71385 CGGTTCGATTTGGCTTTAAA
1 CGGTTCGGTTTAGCTTTAAA
71405 CGGTTCGGTTTA
1 CGGTTCGGTTTA
71417 AAGGCTTCAT
Statistics
Matches: 27, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
20 27 1.00
ACGTcount: A:0.17, C:0.13, G:0.27, T:0.42
Consensus pattern (20 bp):
CGGTTCGGTTTAGCTTTAAA
Found at i:73176 original size:31 final size:31
Alignment explanation
Indices: 73133--73198 Score: 98
Period size: 31 Copynumber: 2.1 Consensus size: 31
73123 TGTATCGTGG
*
73133 AGATTGAATTGCCTAACT-AGGTTAAATCGAC
1 AGATCGAATTGCCTAACTCA-GTTAAATCGAC
*
73164 AGATCGAATTGCCTAACTCAGTTAAGTCGAC
1 AGATCGAATTGCCTAACTCAGTTAAATCGAC
73195 AGAT
1 AGAT
73199 TGATTAGTTT
Statistics
Matches: 32, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
31 31 0.97
32 1 0.03
ACGTcount: A:0.35, C:0.18, G:0.20, T:0.27
Consensus pattern (31 bp):
AGATCGAATTGCCTAACTCAGTTAAATCGAC
Found at i:77683 original size:21 final size:21
Alignment explanation
Indices: 77659--77705 Score: 78
Period size: 21 Copynumber: 2.2 Consensus size: 21
77649 GTAGACTAGT
77659 GGTGGTGGTG-ACTGAACTGGA
1 GGTGGTGGTGAAC-GAACTGGA
77680 GGTGGTGGTGAACGAACTGGA
1 GGTGGTGGTGAACGAACTGGA
77701 GGTGG
1 GGTGG
77706 AGGAGGGGAG
Statistics
Matches: 25, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
21 23 0.92
22 2 0.08
ACGTcount: A:0.19, C:0.09, G:0.51, T:0.21
Consensus pattern (21 bp):
GGTGGTGGTGAACGAACTGGA
Found at i:88420 original size:25 final size:25
Alignment explanation
Indices: 88386--88442 Score: 105
Period size: 25 Copynumber: 2.3 Consensus size: 25
88376 CCTTATACAC
*
88386 AACCAATGTGGGACTTTGCCAAAAA
1 AACCAATGTGAGACTTTGCCAAAAA
88411 AACCAATGTGAGACTTTGCCAAAAA
1 AACCAATGTGAGACTTTGCCAAAAA
88436 AACCAAT
1 AACCAAT
88443 ATGACACTCT
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
25 31 1.00
ACGTcount: A:0.44, C:0.21, G:0.16, T:0.19
Consensus pattern (25 bp):
AACCAATGTGAGACTTTGCCAAAAA
Found at i:98999 original size:37 final size:37
Alignment explanation
Indices: 98921--99059 Score: 196
Period size: 37 Copynumber: 3.8 Consensus size: 37
98911 GACAATCAAT
*
98921 TTTTAAAATATTA-TTTTT-AAAGTTTAGTAAATATTTC
1 TTTTAAAA-A-TAGTTTTTCAAAGTTTGGTAAATATTTC
98958 -TTTAAAAATAGTTTTT-AAAGTTTTGGTAAATATTTC
1 TTTTAAAAATAGTTTTTCAAAG-TTTGGTAAATATTTC
*
98994 TTTTAAAAATAGTTTTTCAAAGTTTGGTAAATGTTTC
1 TTTTAAAAATAGTTTTTCAAAGTTTGGTAAATATTTC
*
99031 TTTGAAAAATAGTTTTTCAAAGTTTGGTA
1 TTTTAAAAATAGTTTTTCAAAGTTTGGTA
99060 GATGTTTGTT
Statistics
Matches: 95, Mismatches: 3, Indels: 8
0.90 0.03 0.08
Matches are distributed among these distances:
34 2 0.02
35 10 0.11
36 21 0.22
37 58 0.61
38 4 0.04
ACGTcount: A:0.35, C:0.04, G:0.12, T:0.50
Consensus pattern (37 bp):
TTTTAAAAATAGTTTTTCAAAGTTTGGTAAATATTTC
Found at i:99016 original size:73 final size:74
Alignment explanation
Indices: 98921--99059 Score: 205
Period size: 73 Copynumber: 1.9 Consensus size: 74
98911 GACAATCAAT
98921 TTTTAAAATATTATTTTTAAAGTTTAGTAAATATTTCTTT-AAAAATAGTTTTT-AAAGTTTTGG
1 TTTTAAAATATTATTTTTAAAGTTTAGTAAATATTTCTTTGAAAAATAGTTTTTCAAAG-TTTGG
98984 TAAATATTTC
65 TAAATATTTC
* *
98994 TTTTAAAA-A-TAGTTTTTCAAAGTTTGGTAAATGTTTCTTTGAAAAATAGTTTTTCAAAGTTTG
1 TTTTAAAATATTA-TTTTT-AAAGTTTAGTAAATATTTCTTTGAAAAATAGTTTTTCAAAGTTTG
99057 GTA
64 GTA
99060 GATGTTTGTT
Statistics
Matches: 60, Mismatches: 2, Indels: 7
0.87 0.03 0.10
Matches are distributed among these distances:
71 2 0.03
72 6 0.10
73 28 0.47
74 20 0.33
75 4 0.07
ACGTcount: A:0.35, C:0.04, G:0.12, T:0.50
Consensus pattern (74 bp):
TTTTAAAATATTATTTTTAAAGTTTAGTAAATATTTCTTTGAAAAATAGTTTTTCAAAGTTTGGT
AAATATTTC
Found at i:99065 original size:37 final size:36
Alignment explanation
Indices: 98934--99076 Score: 191
Period size: 37 Copynumber: 3.9 Consensus size: 36
98924 TAAAATATTA
*
98934 TTTTTAAAGTTTAGTAAATATTTCTTT-AAAAATAG
1 TTTTTAAAGTTTGGTAAATATTTCTTTGAAAAATAG
*
98969 TTTTTAAAGTTTTGGTAAATATTTCTTTTAAAAATAG
1 TTTTTAAAG-TTTGGTAAATATTTCTTTGAAAAATAG
*
99006 TTTTTCAAAGTTTGGTAAATGTTTCTTTGAAAAATAG
1 TTTTT-AAAGTTTGGTAAATATTTCTTTGAAAAATAG
* * *
99043 TTTTTCAAAGTTTGGTAGATGTTT-GTTGAAAAAT
1 TTTTT-AAAGTTTGGTAAATATTTCTTTGAAAAAT
99077 TGTAATGGGA
Statistics
Matches: 100, Mismatches: 5, Indels: 5
0.91 0.05 0.05
Matches are distributed among these distances:
35 9 0.09
36 26 0.26
37 61 0.61
38 4 0.04
ACGTcount: A:0.34, C:0.03, G:0.14, T:0.48
Consensus pattern (36 bp):
TTTTTAAAGTTTGGTAAATATTTCTTTGAAAAATAG
Found at i:99075 original size:73 final size:72
Alignment explanation
Indices: 98934--99076 Score: 191
Period size: 73 Copynumber: 2.0 Consensus size: 72
98924 TAAAATATTA
* *
98934 TTTTTAAAGTTTAGTAAATATTTCTTTAAAAATAGTTTTTAAAGTTTTGGTAAATATTTCTTTTA
1 TTTTTAAAGTTTAGTAAATATTTCTTTAAAAATAGTTTTTAAAGTTTTGGTAAATATTTCGTTGA
98999 AAAATAG
66 AAAATAG
* * * *
99006 TTTTTCAAAGTTTGGTAAATGTTTCTTTGAAAAATAGTTTTTCAAAG-TTTGGTAGATGTTT-GT
1 TTTTT-AAAGTTTAGTAAATATTTCTTT-AAAAATAGTTTTT-AAAGTTTTGGTAAATATTTCGT
99069 TGAAAAAT
63 TGAAAAAT
99077 TGTAATGGGA
Statistics
Matches: 62, Mismatches: 6, Indels: 5
0.85 0.08 0.07
Matches are distributed among these distances:
72 5 0.08
73 28 0.45
74 25 0.40
75 4 0.06
ACGTcount: A:0.34, C:0.03, G:0.14, T:0.48
Consensus pattern (72 bp):
TTTTTAAAGTTTAGTAAATATTTCTTTAAAAATAGTTTTTAAAGTTTTGGTAAATATTTCGTTGA
AAAATAG
Found at i:105979 original size:23 final size:23
Alignment explanation
Indices: 105898--105973 Score: 125
Period size: 23 Copynumber: 3.3 Consensus size: 23
105888 ACATGTACAA
*
105898 ATATGATGTAATAGGTAGCGCTT
1 ATATAATGTAATAGGTAGCGCTT
105921 ATATAATGTAATAGGTAGCGCTT
1 ATATAATGTAATAGGTAGCGCTT
**
105944 ATATAATGTAATAGGTAATGCTT
1 ATATAATGTAATAGGTAGCGCTT
105967 ATATAAT
1 ATATAAT
105974 AAAATATGTT
Statistics
Matches: 50, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
23 50 1.00
ACGTcount: A:0.37, C:0.07, G:0.20, T:0.37
Consensus pattern (23 bp):
ATATAATGTAATAGGTAGCGCTT
Found at i:106036 original size:23 final size:23
Alignment explanation
Indices: 106010--106059 Score: 55
Period size: 23 Copynumber: 2.2 Consensus size: 23
106000 ATCAAGCACA
*
106010 ATAACATATTAAGTACCGCTTAT
1 ATAACATAATAAGTACCGCTTAT
** * *
106033 ATAATGTAATAGGTAGCGCTTAT
1 ATAACATAATAAGTACCGCTTAT
106056 ATAA
1 ATAA
106060 TAAAATAGGT
Statistics
Matches: 22, Mismatches: 5, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
23 22 1.00
ACGTcount: A:0.40, C:0.12, G:0.14, T:0.34
Consensus pattern (23 bp):
ATAACATAATAAGTACCGCTTAT
Found at i:106060 original size:23 final size:23
Alignment explanation
Indices: 106026--106069 Score: 70
Period size: 23 Copynumber: 1.9 Consensus size: 23
106016 TATTAAGTAC
**
106026 CGCTTATATAATGTAATAGGTAG
1 CGCTTATATAATAAAATAGGTAG
106049 CGCTTATATAATAAAATAGGT
1 CGCTTATATAATAAAATAGGT
106070 TAATTACTGA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
23 19 1.00
ACGTcount: A:0.39, C:0.09, G:0.18, T:0.34
Consensus pattern (23 bp):
CGCTTATATAATAAAATAGGTAG
Found at i:106085 original size:87 final size:87
Alignment explanation
Indices: 105932--106249 Score: 537
Period size: 87 Copynumber: 3.7 Consensus size: 87
105922 TATAATGTAA
* ** *
105932 TAGGTAGCGCTTATATAATGTAATAGGTAATGCTTATATAATAAAATATGTTAATTACTGGAAAC
1 TAGGTACCGCTTATATAATGTAATAGGTAGCGCTTATATAATAAAATAGGTTAATTACTGGAAAC
105997 ATTATCAAGCACAATAACATAT
66 ATTATCAAGCACAATAACATAT
* *
106019 TAAGTACCGCTTATATAATGTAATAGGTAGCGCTTATATAATAAAATAGGTTAATTACTGAAAAC
1 TAGGTACCGCTTATATAATGTAATAGGTAGCGCTTATATAATAAAATAGGTTAATTACTGGAAAC
*
106084 ATTGTCAAGCACAATAACATAT
66 ATTATCAAGCACAATAACATAT
106106 TAGGTACCGCTTATATAATGTAATAGGTAGCGCTTATATAATAAAATAGGTTAATTACTGGAAAC
1 TAGGTACCGCTTATATAATGTAATAGGTAGCGCTTATATAATAAAATAGGTTAATTACTGGAAAC
106171 ATTATCAAGCACAATAACATAT
66 ATTATCAAGCACAATAACATAT
* * * *
106193 TAGGTAGCGCTTATATAACGTAATAGGTAGCACTTACATAATAAAATAGGTTAATTA
1 TAGGTACCGCTTATATAATGTAATAGGTAGCGCTTATATAATAAAATAGGTTAATTA
106250 TTTAATTTGT
Statistics
Matches: 217, Mismatches: 14, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
87 217 1.00
ACGTcount: A:0.42, C:0.12, G:0.15, T:0.32
Consensus pattern (87 bp):
TAGGTACCGCTTATATAATGTAATAGGTAGCGCTTATATAATAAAATAGGTTAATTACTGGAAAC
ATTATCAAGCACAATAACATAT
Found at i:106132 original size:23 final size:23
Alignment explanation
Indices: 106106--106156 Score: 75
Period size: 23 Copynumber: 2.2 Consensus size: 23
106096 AATAACATAT
**
106106 TAGGTACCGCTTATATAATGTAA
1 TAGGTACCGCTTATATAATAAAA
*
106129 TAGGTAGCGCTTATATAATAAAA
1 TAGGTACCGCTTATATAATAAAA
106152 TAGGT
1 TAGGT
106157 TAATTACTGG
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
23 25 1.00
ACGTcount: A:0.37, C:0.10, G:0.20, T:0.33
Consensus pattern (23 bp):
TAGGTACCGCTTATATAATAAAA
Found at i:106210 original size:23 final size:23
Alignment explanation
Indices: 106184--106243 Score: 66
Period size: 23 Copynumber: 2.6 Consensus size: 23
106174 ATCAAGCACA
* * *
106184 ATAACATATTAGGTAGCGCTTAT
1 ATAACATAATAGGTAGCACTTAC
*
106207 ATAACGTAATAGGTAGCACTTAC
1 ATAACATAATAGGTAGCACTTAC
* *
106230 ATAATAAAATAGGT
1 ATAACATAATAGGT
106244 TAATTATTTA
Statistics
Matches: 30, Mismatches: 7, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
23 30 1.00
ACGTcount: A:0.42, C:0.12, G:0.17, T:0.30
Consensus pattern (23 bp):
ATAACATAATAGGTAGCACTTAC
Found at i:106512 original size:24 final size:24
Alignment explanation
Indices: 106485--106536 Score: 56
Period size: 24 Copynumber: 2.2 Consensus size: 24
106475 AACATCAAAT
106485 ACAATAA-AACAATATTATTTATTA
1 ACAATAATAACAATATTATTT-TTA
* *
106509 ACAA-AATAATATTATTATTTTTA
1 ACAATAATAACAATATTATTTTTA
106532 A-AATA
1 ACAATA
106537 TTAGAATAAT
Statistics
Matches: 24, Mismatches: 2, Indels: 5
0.77 0.06 0.16
Matches are distributed among these distances:
22 2 0.08
23 7 0.29
24 15 0.62
ACGTcount: A:0.54, C:0.06, G:0.00, T:0.40
Consensus pattern (24 bp):
ACAATAATAACAATATTATTTTTA
Found at i:106564 original size:14 final size:14
Alignment explanation
Indices: 106545--106589 Score: 56
Period size: 14 Copynumber: 3.1 Consensus size: 14
106535 TATTAGAATA
*
106545 ATTTATTTAATATT
1 ATTTATTAAATATT
106559 ATTTATGTAAATATT
1 ATTTAT-TAAATATT
106574 A-TTATTAAAATATT
1 ATTTATT-AAATATT
106588 AT
1 AT
106590 ATCTATAATT
Statistics
Matches: 27, Mismatches: 1, Indels: 5
0.82 0.03 0.15
Matches are distributed among these distances:
13 1 0.04
14 18 0.67
15 8 0.30
ACGTcount: A:0.42, C:0.00, G:0.02, T:0.56
Consensus pattern (14 bp):
ATTTATTAAATATT
Found at i:106603 original size:28 final size:28
Alignment explanation
Indices: 106568--106657 Score: 78
Period size: 28 Copynumber: 3.3 Consensus size: 28
106558 TATTTATGTA
106568 AATATTATTATTAAAATATTAT-ATCTAT
1 AATATTATTATTAAAATATTATGAT-TAT
* * * *
106596 AATTTTATAAATAAAAAATTATGATTAT
1 AATATTATTATTAAAATATTATGATTAT
* ** *
106624 TATATT-TTATTAAAATAAAATTATTAT
1 AATATTATTATTAAAATATTATGATTAT
106651 AA-ATTAT
1 AATATTAT
106658 ATTTTTTATT
Statistics
Matches: 47, Mismatches: 13, Indels: 5
0.72 0.20 0.08
Matches are distributed among these distances:
26 3 0.06
27 17 0.36
28 25 0.53
29 2 0.04
ACGTcount: A:0.50, C:0.01, G:0.01, T:0.48
Consensus pattern (28 bp):
AATATTATTATTAAAATATTATGATTAT
Found at i:106631 original size:30 final size:31
Alignment explanation
Indices: 106597--106662 Score: 82
Period size: 30 Copynumber: 2.2 Consensus size: 31
106587 TATATCTATA
*
106597 ATTTTA-TAAATAAAAAATTATGAT-TATTAT
1 ATTTTATTAAA-AAAAAATTATGATAAATTAT
* *
106627 ATTTTATTAAAATAAAATTATTATAAATTAT
1 ATTTTATTAAAAAAAAATTATGATAAATTAT
106658 ATTTT
1 ATTTT
106663 TTATTTTTTA
Statistics
Matches: 31, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
30 17 0.55
31 14 0.45
ACGTcount: A:0.48, C:0.00, G:0.02, T:0.50
Consensus pattern (31 bp):
ATTTTATTAAAAAAAAATTATGATAAATTAT
Found at i:107185 original size:14 final size:14
Alignment explanation
Indices: 107152--107186 Score: 52
Period size: 14 Copynumber: 2.5 Consensus size: 14
107142 ATTAGCTTTC
*
107152 AAATAATATATATA
1 AAATAATATATAAA
*
107166 ATATAATATATAAA
1 AAATAATATATAAA
107180 AAATAAT
1 AAATAAT
107187 CATAATGAAG
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
14 18 1.00
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (14 bp):
AAATAATATATAAA
Found at i:107360 original size:28 final size:28
Alignment explanation
Indices: 107325--107414 Score: 78
Period size: 28 Copynumber: 3.3 Consensus size: 28
107315 TATTTATGTC
107325 AATATTATTATTAAAATATTAT-ATCTAT
1 AATATTATTATTAAAATATTATAAT-TAT
* * * *
107353 AATTTTATAAATAAAAAATTATAATTAT
1 AATATTATTATTAAAATATTATAATTAT
* ** *
107381 TATATT-TTATTAAAATAAAATTATTAT
1 AATATTATTATTAAAATATTATAATTAT
107408 AA-ATTAT
1 AATATTAT
107415 ATTTATTATT
Statistics
Matches: 47, Mismatches: 13, Indels: 5
0.72 0.20 0.08
Matches are distributed among these distances:
26 3 0.06
27 17 0.36
28 25 0.53
29 2 0.04
ACGTcount: A:0.51, C:0.01, G:0.00, T:0.48
Consensus pattern (28 bp):
AATATTATTATTAAAATATTATAATTAT
Found at i:107417 original size:31 final size:31
Alignment explanation
Indices: 107337--107422 Score: 83
Period size: 30 Copynumber: 2.8 Consensus size: 31
107327 TATTATTATT
*
107337 AAAA-TATTATATCTATAATTTTA-T-AAATAA
1 AAAATTATAATAT-TAT-ATTTTATTAAAATAA
107367 AAAATTATAATTATTATATTTTATTAAAATAA
1 AAAATTATAA-TATTATATTTTATTAAAATAA
*
107399 AATTATTATAA-ATTATA-TTTATTA
1 AA-AATTATAATATTATATTTTATTA
107423 TTTATTATAA
Statistics
Matches: 49, Mismatches: 2, Indels: 10
0.80 0.03 0.16
Matches are distributed among these distances:
30 17 0.35
31 14 0.29
32 11 0.22
33 7 0.14
ACGTcount: A:0.51, C:0.01, G:0.00, T:0.48
Consensus pattern (31 bp):
AAAATTATAATATTATATTTTATTAAAATAA
Found at i:107421 original size:40 final size:42
Alignment explanation
Indices: 107363--107459 Score: 112
Period size: 40 Copynumber: 2.4 Consensus size: 42
107353 AATTTTATAA
* *
107363 ATAAAAAATTATAATTATTATATT-TTATTAA-AATAA-AAT-T
1 ATAATAAATTATATTTATTAT-TTATTA-TAATAATAATAATAT
*
107403 ATTATAAATTATATTTATTATTTATTATAATAATAATAATAT
1 ATAATAAATTATATTTATTATTTATTATAATAATAATAATAT
*
107445 ATAATTAATTATATT
1 ATAATAAATTATATT
107460 ATAATGAGAG
Statistics
Matches: 48, Mismatches: 5, Indels: 6
0.81 0.08 0.10
Matches are distributed among these distances:
39 5 0.10
40 26 0.54
41 3 0.06
42 14 0.29
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (42 bp):
ATAATAAATTATATTTATTATTTATTATAATAATAATAATAT
Found at i:107424 original size:33 final size:32
Alignment explanation
Indices: 107354--107459 Score: 90
Period size: 37 Copynumber: 3.1 Consensus size: 32
107344 TATATCTATA
107354 ATTTTA-T-AAATAAAAAATTATAATTATTAT
1 ATTTTATTAAAATAAAAAATTATAATTATTAT
* *
107384 ATTTTATTAAAATAAAATTATTATAAATTATATTT
1 ATTTTATTAAAATAAAA-AATTAT-AATTAT-TAT
*
107419 ATTATTTATTATAATAATAATAATATATAATTAATTAT
1 A-T-TTTATTAAAATAA-AA-AAT-TATAATT-ATTAT
107457 ATT
1 ATT
107460 ATAATGAGAG
Statistics
Matches: 61, Mismatches: 5, Indels: 14
0.76 0.06 0.17
Matches are distributed among these distances:
30 6 0.10
31 1 0.02
32 8 0.13
33 5 0.08
34 6 0.10
35 3 0.05
36 2 0.03
37 13 0.21
38 12 0.20
39 5 0.08
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (32 bp):
ATTTTATTAAAATAAAAAATTATAATTATTAT
Found at i:107708 original size:21 final size:21
Alignment explanation
Indices: 107684--107736 Score: 88
Period size: 21 Copynumber: 2.5 Consensus size: 21
107674 GTGCACACAT
*
107684 AAAGTTTCGATACATTTATTA
1 AAAGTATCGATACATTTATTA
*
107705 AAAGTATCAATACATTTATTA
1 AAAGTATCGATACATTTATTA
107726 AAAGTATCGAT
1 AAAGTATCGAT
107737 CCCAAAAACA
Statistics
Matches: 29, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
21 29 1.00
ACGTcount: A:0.43, C:0.09, G:0.09, T:0.38
Consensus pattern (21 bp):
AAAGTATCGATACATTTATTA
Found at i:108053 original size:198 final size:199
Alignment explanation
Indices: 107705--108177 Score: 729
Period size: 198 Copynumber: 2.4 Consensus size: 199
107695 ACATTTATTA
* * *
107705 AAAGTATCAATACATTTATTAAAAGTATCGATCCCAAAAACATCGAAACTGATAATTATAATGTA
1 AAAGTGTCGATACATTTATTAAAAGTATCGATCCCAAAAACATCGAAACCGATAATTATAATGTA
* * * * *
107770 ATAGGTAAATTTACAATGTACTCGGTAGAAATATACATGTTTTATGATAAAATAGGTCTACATAA
66 ATAGGTAAATTTACAATATACCCGGTAGAAATATACATGTTTTATGAGAAAATACGTATACATAA
*
107835 TGTATCGACACATTTTAAGTTTGTGTCGATACTTTTTTCCAGAATGAATGTCCAACGAGGTGCAC
131 TGTATCGACACATTTTAAGTTTGTGTCGATACTTTTTTCCAGAATGAATGCCCAACGAGGTGCAC
107900 ACAT
196 ACAT
* * * *
107904 AAAGTGTCGATACATTTATTAAAAATATCGATCTCAAAAA-ATCCAAACCGATAATTACAATGTA
1 AAAGTGTCGATACATTTATTAAAAGTATCGATCCCAAAAACATCGAAACCGATAATTATAATGTA
*
107968 ATAGGTAAATTTACAATATACCCGGTAGAAATATA-TTAGTTTTATGAGAAAATACGTATACATA
66 ATAGGTAAATTTACAATATACCCGGTAGAAATATACAT-GTTTTATGAGAAAATACGTATACATA
*
108032 ATGTATCGACACGTTTTAAGTTTGTGTCGATACTTTTTTCCAGAATGAATGCCCAACGAGGTGCA
130 ATGTATCGACACATTTTAAGTTTGTGTCGATACTTTTTTCCAGAATGAATGCCCAACGAGGTGCA
*
108097 CGCAT
195 CACAT
* *
108102 AAAGTGTCGATACATTTA--AAATTGTATCGATCCCAAAAATATCGAAACCGATAATTATAATGT
1 AAAGTGTCGATACATTTATTAAA-AGTATCGATCCCAAAAACATCGAAACCGATAATTATAATGT
*
108165 AATAAGTAAATTT
65 AATAGGTAAATTT
108178 GTAATGTTAC
Statistics
Matches: 249, Mismatches: 22, Indels: 7
0.90 0.08 0.03
Matches are distributed among these distances:
196 3 0.01
197 15 0.06
198 195 0.78
199 36 0.14
ACGTcount: A:0.40, C:0.14, G:0.14, T:0.32
Consensus pattern (199 bp):
AAAGTGTCGATACATTTATTAAAAGTATCGATCCCAAAAACATCGAAACCGATAATTATAATGTA
ATAGGTAAATTTACAATATACCCGGTAGAAATATACATGTTTTATGAGAAAATACGTATACATAA
TGTATCGACACATTTTAAGTTTGTGTCGATACTTTTTTCCAGAATGAATGCCCAACGAGGTGCAC
ACAT
Found at i:108272 original size:23 final size:23
Alignment explanation
Indices: 108216--108272 Score: 60
Period size: 23 Copynumber: 2.4 Consensus size: 23
108206 TTTATGATAG
*
108216 AATATGTCAATATAAGCGCTACCT
1 AATATGT-TATATAAGCGCTACCT
* ** *
108240 ATTACATTATATAAGCGCTGCCT
1 AATATGTTATATAAGCGCTACCT
108263 AATATGTTAT
1 AATATGTTAT
108273 TGTACTTAAT
Statistics
Matches: 25, Mismatches: 8, Indels: 1
0.74 0.24 0.03
Matches are distributed among these distances:
23 21 0.84
24 4 0.16
ACGTcount: A:0.35, C:0.18, G:0.12, T:0.35
Consensus pattern (23 bp):
AATATGTTATATAAGCGCTACCT
Found at i:108321 original size:87 final size:87
Alignment explanation
Indices: 108225--108413 Score: 283
Period size: 87 Copynumber: 2.2 Consensus size: 87
108215 GAATATGTCA
* * *
108225 ATATAAGCGCTACCTATTACATTATATAAGCGCTGCCTAATATGTTATTGTACTTAATAATATTT
1 ATATAAGCGCTACCTATTACATTATATAAACGCTACCTAATATGTTATTGTACTTAATAATGTTT
108290 -TCAGTAATTAACCCATTTTATT
66 CT-AGTAATTAACCCATTTTATT
** *
108312 ATATAAGCGCTACCTATTACATTATATAAACGCTACCTAATATGTTATTGTGTTTGATAATGTTT
1 ATATAAGCGCTACCTATTACATTATATAAACGCTACCTAATATGTTATTGTACTTAATAATGTTT
*
108377 CTAGTAATTAACCTATTTTATT
66 CTAGTAATTAACCCATTTTATT
*
108399 AT-TAAGTGCTACCTA
1 ATATAAGCGCTACCTA
108414 ATTTGTTATT
Statistics
Matches: 93, Mismatches: 8, Indels: 3
0.89 0.08 0.03
Matches are distributed among these distances:
86 12 0.13
87 80 0.86
88 1 0.01
ACGTcount: A:0.33, C:0.15, G:0.10, T:0.42
Consensus pattern (87 bp):
ATATAAGCGCTACCTATTACATTATATAAACGCTACCTAATATGTTATTGTACTTAATAATGTTT
CTAGTAATTAACCCATTTTATT
Found at i:108359 original size:23 final size:23
Alignment explanation
Indices: 108309--108353 Score: 72
Period size: 23 Copynumber: 2.0 Consensus size: 23
108299 AACCCATTTT
* *
108309 ATTATATAAGCGCTACCTATTAC
1 ATTATATAAACGCTACCTAATAC
108332 ATTATATAAACGCTACCTAATA
1 ATTATATAAACGCTACCTAATA
108354 TGTTATTGTG
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
23 20 1.00
ACGTcount: A:0.40, C:0.20, G:0.07, T:0.33
Consensus pattern (23 bp):
ATTATATAAACGCTACCTAATAC
Found at i:108758 original size:24 final size:24
Alignment explanation
Indices: 108731--108777 Score: 94
Period size: 24 Copynumber: 2.0 Consensus size: 24
108721 TTGATCTCCT
108731 TCATTCTCCTATCAACTATCACCA
1 TCATTCTCCTATCAACTATCACCA
108755 TCATTCTCCTATCAACTATCACC
1 TCATTCTCCTATCAACTATCACC
108778 TCTTATTCTC
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 23 1.00
ACGTcount: A:0.28, C:0.38, G:0.00, T:0.34
Consensus pattern (24 bp):
TCATTCTCCTATCAACTATCACCA
Found at i:112186 original size:2 final size:2
Alignment explanation
Indices: 112179--112206 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
112169 CATGTAGTTA
112179 AG AG AG AG AG AG AG AG AG AG AG AG AG AG
1 AG AG AG AG AG AG AG AG AG AG AG AG AG AG
112207 CAATGTACCA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.50, T:0.00
Consensus pattern (2 bp):
AG
Found at i:112944 original size:46 final size:46
Alignment explanation
Indices: 112892--112985 Score: 188
Period size: 46 Copynumber: 2.0 Consensus size: 46
112882 CTCGATTGAA
112892 GCCTAAAATTCGAGCTTGATTGAAGTGAAAGAATAGTTCACTAAAT
1 GCCTAAAATTCGAGCTTGATTGAAGTGAAAGAATAGTTCACTAAAT
112938 GCCTAAAATTCGAGCTTGATTGAAGTGAAAGAATAGTTCACTAAAT
1 GCCTAAAATTCGAGCTTGATTGAAGTGAAAGAATAGTTCACTAAAT
112984 GC
1 GC
112986 TCATCAAAAG
Statistics
Matches: 48, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
46 48 1.00
ACGTcount: A:0.38, C:0.14, G:0.20, T:0.28
Consensus pattern (46 bp):
GCCTAAAATTCGAGCTTGATTGAAGTGAAAGAATAGTTCACTAAAT
Found at i:113383 original size:22 final size:21
Alignment explanation
Indices: 113358--113399 Score: 66
Period size: 22 Copynumber: 2.0 Consensus size: 21
113348 ATATAAAAAA
113358 GTATTTTTATTAAATATTTTTG
1 GTATTTTTATTAAAT-TTTTTG
*
113380 GTATTTTTATTTAATTTTTT
1 GTATTTTTATTAAATTTTTT
113400 AAATAATTAT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 5 0.26
22 14 0.74
ACGTcount: A:0.24, C:0.00, G:0.07, T:0.69
Consensus pattern (21 bp):
GTATTTTTATTAAATTTTTTG
Found at i:113799 original size:20 final size:18
Alignment explanation
Indices: 113763--113798 Score: 72
Period size: 18 Copynumber: 2.0 Consensus size: 18
113753 TATTCATTGA
113763 GAGAATAAGGATATTTTT
1 GAGAATAAGGATATTTTT
113781 GAGAATAAGGATATTTTT
1 GAGAATAAGGATATTTTT
113799 TAAAAAAAAT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.39, C:0.00, G:0.22, T:0.39
Consensus pattern (18 bp):
GAGAATAAGGATATTTTT
Found at i:118819 original size:2 final size:2
Alignment explanation
Indices: 118810--118856 Score: 87
Period size: 2 Copynumber: 24.0 Consensus size: 2
118800 AAACAAAGAA
118810 AT AT -T AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
118851 AT AT AT
1 AT AT AT
118857 TAAAACATTA
Statistics
Matches: 44, Mismatches: 0, Indels: 2
0.96 0.00 0.04
Matches are distributed among these distances:
1 1 0.02
2 43 0.98
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
AT
Found at i:120588 original size:3 final size:3
Alignment explanation
Indices: 120554--120608 Score: 65
Period size: 3 Copynumber: 17.7 Consensus size: 3
120544 CTTGAAACAG
* * *
120554 TAA TAAA TAA TAT TAA TAA AAA TAA CAA TAA TAA TAA TAA TATA TAA
1 TAA T-AA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TA-A TAA
120601 TAA TAA TA
1 TAA TAA TA
120609 TTTTTTAAAA
Statistics
Matches: 44, Mismatches: 6, Indels: 4
0.81 0.11 0.07
Matches are distributed among these distances:
3 38 0.86
4 6 0.14
ACGTcount: A:0.65, C:0.02, G:0.00, T:0.33
Consensus pattern (3 bp):
TAA
Found at i:120600 original size:28 final size:28
Alignment explanation
Indices: 120549--120606 Score: 73
Period size: 28 Copynumber: 2.1 Consensus size: 28
120539 GGTGGCTTGA
* *
120549 AACAGTAATAAATAATATTAATAAAAAT
1 AACAATAATAAATAATAATAATAAAAAT
*
120577 AACAATAAT-AATAATAATATATAATAAT
1 AACAATAATAAATAATAATA-ATAAAAAT
120605 AA
1 AA
120607 TATTTTTTAA
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
27 9 0.35
28 17 0.65
ACGTcount: A:0.66, C:0.03, G:0.02, T:0.29
Consensus pattern (28 bp):
AACAATAATAAATAATAATAATAAAAAT
Found at i:121403 original size:19 final size:19
Alignment explanation
Indices: 121379--121416 Score: 51
Period size: 19 Copynumber: 2.0 Consensus size: 19
121369 TTTTAATGTT
121379 TATATAAATGAT-TATTTTA
1 TATATAAAT-ATATATTTTA
*
121398 TATATATATATATATTTTA
1 TATATAAATATATATTTTA
121417 AATTGTTGTA
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
18 2 0.12
19 15 0.88
ACGTcount: A:0.42, C:0.00, G:0.03, T:0.55
Consensus pattern (19 bp):
TATATAAATATATATTTTA
Found at i:121571 original size:40 final size:38
Alignment explanation
Indices: 121507--121658 Score: 191
Period size: 38 Copynumber: 3.9 Consensus size: 38
121497 AAAAATCGGT
*
121507 TTTTGAAATATATATATAATATATAGTTTTTGAAAACA
1 TTTTAAAATATATATATAATATATAGTTTTTGAAAACA
121545 TTTTAAAATATATATATATATAATATAG-TTTTGAAAACA
1 TTTTAAAATATATATATA-AT-ATATAGTTTTTGAAAACA
* *
121584 TTTTAAAAACATATATATATAATATATGGGTTTT-AAAACA
1 TTTT--AAA-ATATATATATAATATATAGTTTTTGAAAACA
* *
121624 TTTTGAAAACATATATATAATATATAATTTTTGAA
1 TTTT-AAAATATATATATAATATATAGTTTTTGAA
121659 TATATATATA
Statistics
Matches: 100, Mismatches: 7, Indels: 13
0.83 0.06 0.11
Matches are distributed among these distances:
38 37 0.37
39 22 0.22
40 21 0.21
41 9 0.09
42 11 0.11
ACGTcount: A:0.47, C:0.03, G:0.07, T:0.43
Consensus pattern (38 bp):
TTTTAAAATATATATATAATATATAGTTTTTGAAAACA
Found at i:121598 original size:38 final size:38
Alignment explanation
Indices: 121514--121642 Score: 170
Period size: 40 Copynumber: 3.2 Consensus size: 38
121504 GGTTTTTGAA
*
121514 ATATATATATAATATATAGTTTTTGAAAACATTTTAAAATAT
1 ATATATATAT-A-ATATAG-TTTTGAAAACATTTTAAAA-AC
121556 ATATATATATAATATAGTTTTGAAAACATTTTAAAAAC
1 ATATATATATAATATAGTTTTGAAAACATTTTAAAAAC
*
121594 ATATATATATAATATATGGGTTTT-AAAACATTTTGAAAAC
1 ATATATATATAATATA---GTTTTGAAAACATTTTAAAAAC
121634 ATATATATA
1 ATATATATA
121643 ATATATAATT
Statistics
Matches: 82, Mismatches: 2, Indels: 8
0.89 0.02 0.09
Matches are distributed among these distances:
38 17 0.21
39 19 0.23
40 30 0.37
41 6 0.07
42 10 0.12
ACGTcount: A:0.48, C:0.04, G:0.06, T:0.42
Consensus pattern (38 bp):
ATATATATATAATATAGTTTTGAAAACATTTTAAAAAC
Found at i:121718 original size:62 final size:64
Alignment explanation
Indices: 121594--121720 Score: 165
Period size: 64 Copynumber: 2.0 Consensus size: 64
121584 TTTTAAAAAC
* *
121594 ATATATATATAATATATGGGTTTTAAAACATTTTGAAAACATATATATAATATATAATTTTTGA
1 ATATATATATAATATATGAGTTTTAAAACATTTTGAAAACATATATATAATATATAAGTTTTGA
*
121658 ATATATATAT-AT-TAT-AGTTTTGAAAACAATCTTTGAAAATATATATAT-ATATAT-AGTTTT
1 ATATATATATAATATATGAGTTTT-AAAAC-AT-TTTGAAAACATATATATAATATATAAGTTTT
121718 GA
63 GA
121720 A
1 A
121721 AATTATTTTT
Statistics
Matches: 57, Mismatches: 3, Indels: 8
0.84 0.04 0.12
Matches are distributed among these distances:
61 5 0.09
62 16 0.28
63 10 0.18
64 26 0.46
ACGTcount: A:0.45, C:0.03, G:0.08, T:0.44
Consensus pattern (64 bp):
ATATATATATAATATATGAGTTTTAAAACATTTTGAAAACATATATATAATATATAAGTTTTGA
Found at i:121736 original size:39 final size:39
Alignment explanation
Indices: 121657--121752 Score: 133
Period size: 39 Copynumber: 2.5 Consensus size: 39
121647 ATAATTTTTG
*
121657 AATATATATATAT-TATAGTTTTGAAAACAATCTTTGAA
1 AATATATATATATATATAGTTTTGAAAACAATCTTTAAA
** *
121695 AATATATATATATATATAGTTTTGAAAATTATTTTTAAA
1 AATATATATATATATATAGTTTTGAAAACAATCTTTAAA
*
121734 AATATGTATAT-TATATAGT
1 AATATATATATATATATAGT
121753 GGAGTATTTT
Statistics
Matches: 52, Mismatches: 5, Indels: 2
0.88 0.08 0.03
Matches are distributed among these distances:
38 21 0.40
39 31 0.60
ACGTcount: A:0.45, C:0.02, G:0.07, T:0.46
Consensus pattern (39 bp):
AATATATATATATATATAGTTTTGAAAACAATCTTTAAA
Found at i:121960 original size:38 final size:38
Alignment explanation
Indices: 121903--122032 Score: 165
Period size: 38 Copynumber: 3.4 Consensus size: 38
121893 ATTAATATAT
*
121903 ATATATATATTTATATAGTTTTAAAAATTATTTTTAAAA
1 ATATATATA-TTATATAGTTTTGAAAATTATTTTTAAAA
* *
121942 ATATGTATATTATATAGTTTTGAAAATTACTTTT-AAA
1 ATATATATATTATATAGTTTTGAAAATTATTTTTAAAA
* * * *
121979 A-ATATATATTATATAGTTTTGAAAATGATATTTGAAT
1 ATATATATATTATATAGTTTTGAAAATTATTTTTAAAA
122016 ATATATATATATATATA
1 ATATATATAT-TATATA
122033 TATATATATA
Statistics
Matches: 80, Mismatches: 8, Indels: 6
0.85 0.09 0.06
Matches are distributed among these distances:
36 28 0.35
37 7 0.09
38 31 0.39
39 14 0.17
ACGTcount: A:0.45, C:0.01, G:0.06, T:0.48
Consensus pattern (38 bp):
ATATATATATTATATAGTTTTGAAAATTATTTTTAAAA
Found at i:121994 original size:36 final size:35
Alignment explanation
Indices: 121905--122030 Score: 153
Period size: 36 Copynumber: 3.4 Consensus size: 35
121895 TAATATATAT
*
121905 ATATATATTTATATAGTTTTAAAAATTATTTTTAAAA
1 ATATATA-TTATATAGTTTTGAAAATTA-TTTTAAAA
121942 ATATGTATATTATATAGTTTTGAAAATTACTTTTAAAA
1 ATA--TATATTATATAGTTTTGAAAATTA-TTTTAAAA
* * *
121980 ATATATATTATATAGTTTTGAAAATGATATTTGAAT
1 ATATATATTATATAGTTTTGAAAATTAT-TTTAAAA
122016 ATATATATATATATA
1 ATATATAT-TATATA
122031 TATATATATA
Statistics
Matches: 80, Mismatches: 5, Indels: 8
0.86 0.05 0.09
Matches are distributed among these distances:
35 1 0.01
36 36 0.45
37 9 0.11
38 30 0.38
39 4 0.05
ACGTcount: A:0.44, C:0.01, G:0.06, T:0.48
Consensus pattern (35 bp):
ATATATATTATATAGTTTTGAAAATTATTTTAAAA
Found at i:122021 original size:2 final size:2
Alignment explanation
Indices: 122014--122053 Score: 73
Period size: 2 Copynumber: 20.5 Consensus size: 2
122004 TGATATTTGA
122014 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT -T AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
122054 GTTCTGAAAA
Statistics
Matches: 37, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
1 1 0.03
2 36 0.97
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:122081 original size:39 final size:40
Alignment explanation
Indices: 122036--122121 Score: 104
Period size: 41 Copynumber: 2.1 Consensus size: 40
122026 ATATATATAT
*
122036 ATATATATATATATTATAGTTCTGAAAA-TATTTTTTGAAAA-
1 ATATATATAT-TA-TATAGTTCTAAAAAGT-TTTTTTGAAAAC
*
122077 ATATATATATTATATAGTTTTAAAAAGGTTTTTTTGAAAAC
1 ATATATATATTATATAGTTCTAAAAA-GTTTTTTTGAAAAC
122118 ATAT
1 ATAT
122122 TTCATTTATT
Statistics
Matches: 40, Mismatches: 2, Indels: 6
0.83 0.04 0.12
Matches are distributed among these distances:
39 12 0.30
40 13 0.32
41 15 0.38
ACGTcount: A:0.43, C:0.02, G:0.08, T:0.47
Consensus pattern (40 bp):
ATATATATATTATATAGTTCTAAAAAGTTTTTTTGAAAAC
Found at i:123240 original size:16 final size:16
Alignment explanation
Indices: 123221--123287 Score: 52
Period size: 17 Copynumber: 4.3 Consensus size: 16
123211 AACCAAGCAT
123221 CAATCGAACCAAAAAA
1 CAATCGAACCAAAAAA
* *
123237 CAATACCAACAAAAAAA
1 CAAT-CGAACCAAAAAA
* *
123254 CAA---AA-CAACATA
1 CAATCGAACCAAAAAA
123266 CAAATCGAACCAAAAAA
1 C-AATCGAACCAAAAAA
123283 CAATC
1 CAATC
123288 TTAAATAATA
Statistics
Matches: 38, Mismatches: 7, Indels: 12
0.67 0.12 0.21
Matches are distributed among these distances:
12 5 0.13
13 4 0.11
16 10 0.26
17 19 0.50
ACGTcount: A:0.64, C:0.25, G:0.03, T:0.07
Consensus pattern (16 bp):
CAATCGAACCAAAAAA
Found at i:124850 original size:19 final size:21
Alignment explanation
Indices: 124792--124850 Score: 68
Period size: 21 Copynumber: 2.9 Consensus size: 21
124782 ATTTTTTTTA
*
124792 TTATTAAAATATATTATTTAT
1 TTATTAAAATATATTAATTAT
**
124813 TTATTAAAATATAAAAATTA-
1 TTATTAAAATATATTAATTAT
*
124833 TTA-TGAAATATATTAATT
1 TTATTAAAATATATTAATT
124851 TAATCATTTA
Statistics
Matches: 32, Mismatches: 6, Indels: 2
0.80 0.15 0.05
Matches are distributed among these distances:
19 12 0.38
20 3 0.09
21 17 0.53
ACGTcount: A:0.49, C:0.00, G:0.02, T:0.49
Consensus pattern (21 bp):
TTATTAAAATATATTAATTAT
Found at i:124884 original size:42 final size:40
Alignment explanation
Indices: 124794--124889 Score: 124
Period size: 42 Copynumber: 2.4 Consensus size: 40
124784 TTTTTTTATT
* * *
124794 ATTA-AAATATATT-ATTTATTTATTAAAATATAAAAATT
1 ATTATAAATATATTAATTTAATCATTAAAATATAAAAATG
124832 ATTATGAAATATATTAATTTAATCATTTAAAATATAATAAATG
1 ATTAT-AAATATATTAATTTAATCA-TTAAAATATAA-AAATG
124875 ATTATAAATATATTA
1 ATTATAAATATATTA
124890 TTATAAAATA
Statistics
Matches: 50, Mismatches: 3, Indels: 6
0.85 0.05 0.10
Matches are distributed among these distances:
38 4 0.08
40 9 0.18
41 7 0.14
42 21 0.42
43 9 0.18
ACGTcount: A:0.52, C:0.01, G:0.02, T:0.45
Consensus pattern (40 bp):
ATTATAAATATATTAATTTAATCATTAAAATATAAAAATG
Found at i:124892 original size:14 final size:15
Alignment explanation
Indices: 124875--124904 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
124865 ATAATAAATG
124875 ATTAT-AAATATATT
1 ATTATAAAATATATT
124889 ATTATAAAATATATT
1 ATTATAAAATATATT
124904 A
1 A
124905 GTTTAATTAT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 5 0.33
15 10 0.67
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (15 bp):
ATTATAAAATATATT
Found at i:142530 original size:50 final size:50
Alignment explanation
Indices: 142455--142564 Score: 211
Period size: 50 Copynumber: 2.2 Consensus size: 50
142445 AATTTTAAGA
142455 ATTAGTCAAAAGATGATGAAGAAAAAAAAACAAGAAAGGAAGGTCAAACG
1 ATTAGTCAAAAGATGATGAAGAAAAAAAAACAAGAAAGGAAGGTCAAACG
142505 ATTAGTCAAAAGATGATGAAGAAAAAAAAACAAGAAAGGAAGGTCAAACG
1 ATTAGTCAAAAGATGATGAAGAAAAAAAAACAAGAAAGGAAGGTCAAACG
*
142555 GTTAGTCAAA
1 ATTAGTCAAA
142565 GGTGTCTTCG
Statistics
Matches: 59, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
50 59 1.00
ACGTcount: A:0.56, C:0.08, G:0.22, T:0.14
Consensus pattern (50 bp):
ATTAGTCAAAAGATGATGAAGAAAAAAAAACAAGAAAGGAAGGTCAAACG
Found at i:143106 original size:21 final size:21
Alignment explanation
Indices: 143080--143149 Score: 67
Period size: 21 Copynumber: 3.3 Consensus size: 21
143070 CATATTCGCA
143080 TTGCGATAGTTCAAGTTCACG
1 TTGCGATAGTTCAAGTTCACG
143101 TTGCGATTTA-TTCCAAGTTCA--
1 TTGCGA--TAGTT-CAAGTTCACG
*
143122 TTGCGATAG-TCGAAGTTCGCG
1 TTGCGATAGTTC-AAGTTCACG
143143 TTGCGAT
1 TTGCGAT
143150 TTATTCCAAA
Statistics
Matches: 41, Mismatches: 1, Indels: 14
0.73 0.02 0.25
Matches are distributed among these distances:
18 1 0.02
19 9 0.22
21 19 0.46
22 2 0.05
23 10 0.24
ACGTcount: A:0.21, C:0.19, G:0.24, T:0.36
Consensus pattern (21 bp):
TTGCGATAGTTCAAGTTCACG
Found at i:143129 original size:42 final size:42
Alignment explanation
Indices: 143078--143170 Score: 143
Period size: 42 Copynumber: 2.2 Consensus size: 42
143068 TACATATTCG
*
143078 CATTGCGATAGTTC-AAGTTCACGTTGCGATTTATTCCAAGTT
1 CATTGCGATAG-TCGAAGTTCACGTTGCGATTTATTCCAAATT
*
143120 CATTGCGATAGTCGAAGTTCGCGTTGCGATTTATTCCAAATT
1 CATTGCGATAGTCGAAGTTCACGTTGCGATTTATTCCAAATT
*
143162 CGTTGCGAT
1 CATTGCGAT
143171 TTATTCCAAA
Statistics
Matches: 47, Mismatches: 3, Indels: 2
0.90 0.06 0.04
Matches are distributed among these distances:
41 2 0.04
42 45 0.96
ACGTcount: A:0.23, C:0.19, G:0.22, T:0.37
Consensus pattern (42 bp):
CATTGCGATAGTCGAAGTTCACGTTGCGATTTATTCCAAATT
Found at i:143147 original size:63 final size:61
Alignment explanation
Indices: 143099--143258 Score: 257
Period size: 63 Copynumber: 2.6 Consensus size: 61
143089 TTCAAGTTCA
* *
143099 CGTTGCGATTTATTCCAAGTTCATTGCGATAGTCGAAGTTCGCGTTGCGATTTATTCCAAATT
1 CGTTGCGATTTATTCCAAATTCGTTGCGATAGTCGAAGTTCGCGTTGCGA-TTATT-CAAATT
*
143162 CGTTGCGATTTATTCCAAATTCGTTGCGATAGTCGAAGTTCGCGTTACGATTTATTCTAAATT
1 CGTTGCGATTTATTCCAAATTCGTTGCGATAGTCGAAGTTCGCGTTGCGA-TTATTC-AAATT
143225 CGTTGCGATTTATTCCAAATTCGTTGCGATAGTC
1 CGTTGCGATTTATTCCAAATTCGTTGCGATAGTC
143259 CAAAATCGCA
Statistics
Matches: 93, Mismatches: 3, Indels: 2
0.95 0.03 0.02
Matches are distributed among these distances:
62 1 0.01
63 92 0.99
ACGTcount: A:0.23, C:0.19, G:0.20, T:0.39
Consensus pattern (61 bp):
CGTTGCGATTTATTCCAAATTCGTTGCGATAGTCGAAGTTCGCGTTGCGATTATTCAAATT
Found at i:143165 original size:21 final size:21
Alignment explanation
Indices: 143099--143254 Score: 158
Period size: 21 Copynumber: 7.4 Consensus size: 21
143089 TTCAAGTTCA
*
143099 CGTTGCGATTTATTCCAAGTT
1 CGTTGCGATTTATTCCAAATT
* * * *
143120 CATTGCGA--TAGTCGAAGTT
1 CGTTGCGATTTATTCCAAATT
143139 CGCGTTGCGATTTATTCCAAATT
1 --CGTTGCGATTTATTCCAAATT
143162 CGTTGCGATTTATTCCAAATT
1 CGTTGCGATTTATTCCAAATT
* * *
143183 CGTTGCGA--TAGTCGAAGTT
1 CGTTGCGATTTATTCCAAATT
* *
143202 CGCGTTACGATTTATTCTAAATT
1 --CGTTGCGATTTATTCCAAATT
143225 CGTTGCGATTTATTCCAAATT
1 CGTTGCGATTTATTCCAAATT
143246 CGTTGCGAT
1 CGTTGCGAT
143255 AGTCCAAAAT
Statistics
Matches: 111, Mismatches: 16, Indels: 16
0.78 0.11 0.11
Matches are distributed among these distances:
19 17 0.15
21 78 0.70
23 16 0.14
ACGTcount: A:0.22, C:0.19, G:0.20, T:0.39
Consensus pattern (21 bp):
CGTTGCGATTTATTCCAAATT
Found at i:144723 original size:23 final size:23
Alignment explanation
Indices: 144697--144747 Score: 68
Period size: 23 Copynumber: 2.2 Consensus size: 23
144687 ATTATGAACC
*
144697 ATTATGT-ATGTATTTCTTAATCA
1 ATTATGTAAT-TATATCTTAATCA
*
144720 ATTATGTAATTATATCTTAATCC
1 ATTATGTAATTATATCTTAATCA
144743 ATTAT
1 ATTAT
144748 AAATATAAAT
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
23 23 0.92
24 2 0.08
ACGTcount: A:0.33, C:0.10, G:0.06, T:0.51
Consensus pattern (23 bp):
ATTATGTAATTATATCTTAATCA
Found at i:152757 original size:11 final size:11
Alignment explanation
Indices: 152741--152775 Score: 54
Period size: 11 Copynumber: 3.3 Consensus size: 11
152731 TATCCCAAAG
152741 ATGATATGTAT
1 ATGATATGTAT
152752 ATGATATGTAT
1 ATGATATGTAT
*
152763 ATG-TATGTGT
1 ATGATATGTAT
152773 ATG
1 ATG
152776 TGTATGTGTA
Statistics
Matches: 23, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
10 9 0.39
11 14 0.61
ACGTcount: A:0.31, C:0.00, G:0.23, T:0.46
Consensus pattern (11 bp):
ATGATATGTAT
Found at i:152764 original size:6 final size:6
Alignment explanation
Indices: 152758--156958 Score: 5753
Period size: 6 Copynumber: 717.2 Consensus size: 6
152748 GTATATGATA
*
152758 TGTATA TGTATG TGTATG TGTATG TGTATG TGTATG TGTATG TGTATG
1 TGTATG TGTATG TGTATG TGTATG TGTATG TGTATG TGTATG TGTATG
152806 TGTATG TGTATG TGTATG TGTATG TGTATG TGTATG TGTATG TGTATG
1 TGTATG TGTATG TGTATG TGTATG TGTATG TGTATG TGTATG TGTATG
* *
152854 TGTATG TGTATG TGTATG TG--TG TGTACG TGTACG TGTATG TGTA--
1 TGTATG TGTATG TGTATG TGTATG TGTATG TGTATG TGTATG TGTATG
* *
152898 TGTACG TGTATG TGTATG TGTATG TGTATG TGTA-G TGTACGTG TGTACG
1 TGTATG TGTATG TGTATG TGTATG TGTATG TGTATG TGTA--TG TGTATG
* * *
152947 TGTATG TGTACG TGTATG TGTACG TGTATG TGTA-- TGTATG TGTACG
1 TGTATG TGTATG TGTATG TGTATG TGTATG TGTATG TGTATG TGTATG
* * * *
152993 TGTACG TGTATG TGTACG TGTACG TGTA-- TGTATG T-TATG TGTACG
1 TGTATG TGTATG TGTATG TGTATG TGTATG TGTATG TGTATG TGTATG
* * * *
153038 TGTACG TGTTACG TGTACG TGTAT- TG--TG TGTATG TGTACG TGTATG
1 TGTATG TG-TATG TGTATG TGTATG TGTATG TGTATG TGTATG TGTATG
*
153084 TGTATG TATGTACG TGTATG TGTATG TGTA-- TGTATG TGTATG TGTATG
1 TGTATG --TGTATG TGTATG TGTATG TGTATG TGTATG TGTATG TGTATG
153132 TGTATG TGTATG TGTAT- TGTATG TGTATG TGTATG TGTA-- TGTATG
1 TGTATG TGTATG TGTATG TGTATG TGTATG TGTATG TGTATG TGTATG
153177 TGTATG TGTATG TGTATG TGTATG TGTATG TGTATG TGTATG TGTATG
1 TGTATG TGTATG TGTATG TGTATG TGTATG TGTATG TGTATG TGTATG
153225 TGTATG TGTATG TGTATG TGTATG TGTATG TGTA-- TGTATG TGTATG
1 TGTATG TGTATG TGTATG TGTATG TGTATG TGTATG TGTATG TGTATG
153271 TGTATG TGTATG TGTATG TGTATG TGTATG TGTA-- TGTATG TGTATG
1 TGTATG TGTATG TGTATG TGTATG TGTATG TGTATG TGTATG TGTATG
153317 TGTATG TGTATG TGTATG TGTATG TGTATG TG--TG TGTATG TGTA-G
1 TGTATG TGTATG TGTATG TGTATG TGTATG TGTATG TGTATG TGTATG
153362 TGTATG TGTATG TGTATG TGTATG TGTATG TGTATG TGTATG TG--TG
1 TGTATG TGTATG TGTATG TGTATG TGTATG TGTATG TGTATG TGTATG
153408 TGTATG TGTATG TGTATG TGTATG TGTATG TGTATG TGTATG TGTATG
1 TGTATG TGTATG TGTATG TGTATG TGTATG TGTATG TGTATG TGTATG
153456 TGTATG TGTATG TGTATG TGTATG TGTATG TGTATG TGTATG TGTATG
1 TGTATG TGTATG TGTATG TGTATG TGTATG TGTATG TGTATG TGTATG
153504 TGTA-- TGTATG TGTATG TGTATG TGTATG TGTATG TGTATG TGTATG
1 TGTATG TGTATG TGTATG TGTATG TGTATG TGTATG TGTATG TGTATG
153550 TGTATG TGTATG TGTATG TGTATG TGTATG TGTATG TGTATG TGTATG
1 TGTATG TGTATG TGTATG TGTATG TGTATG TGTATG TGTATG TGTATG
153598 TGTATG TGTATG TGTATG TGTATG TGTATG TGTATG TGTATG TGTATG
1 TGTATG TGTATG TGTATG TGTATG TGTATG TGTATG TGTATG TGTATG
153646 TGTATG TGTATG TGTTTATG TGTATG TGTATG TGTATG TGTATG -GTATG
1 TGTATG TGTATG TG--TATG TGTATG TGTATG TGTATG TGTATG TGTATG
153695 TGTATG TGTATG TGTATG TGTATG TGTATG TGTATG TG--T- TGTATG
1 TGTATG TGTATG TGTATG TGTATG TGTATG TGTATG TGTATG TGTATG
153740 TGTATG TGTATG TGTATG TGTATG TGTATG TGTATG TGTATG TGTATG
1 TGTATG TGTATG TGTATG TGTATG TGTATG TGTATG TGTATG TGTATG
153788 TGTATG TGTATG TGTATG TGTATG TGTATG TGTATG TGTATG TGT-TG
1 TGTATG TGTATG TGTATG TGTATG TGTATG TGTATG TGTATG TGTATG
153835 TGTATG TGTA-- TGTATG TGTATG TGTATG TGTATG TGTATG TGTATG
1 TGTATG TGTATG TGTATG TGTATG TGTATG TGTATG TGTATG TGTATG
153881 TGTATG TGTATG TGTATG TGTATG TGTATG TGTATG TGTATG TGTATG
1 TGTATG TGTATG TGTATG TGTATG TGTATG TGTATG TGTATG TGTATG
153929 TGTATG TG--TG TGTATG TGTATG TGTATG TGTATG TGTATG TGTATG
1 TGTATG TGTATG TGTATG TGTATG TGTATG TGTATG TGTATG TGTATG
153975 TGTATG TGTATG TGTATG TGTATG TGTATG TGTATG TGTATG TGTATG
1 TGTATG TGTATG TGTATG TGTATG TGTATG TGTATG TGTATG TGTATG
154023 TGTATG TGTATG TGTATG TGTATG TGTATG TGTATG TG--TG TGTATG
1 TGTATG TGTATG TGTATG TGTATG TGTATG TGTATG TGTATG TGTATG
154069 TGTATG TGTATG TG-ATG TGTATG TGTATG TGTATG TGTATG TGTATG
1 TGTATG TGTATG TGTATG TGTATG TGTATG TGTATG TGTATG TGTATG
154116 TGTATG TGTATG TGTATG TG--TG TGTATG TGTATG TGTATG TG--TG
1 TGTATG TGTATG TGTATG TGTATG TGTATG TGTATG TGTATG TGTATG
* * * * *
154160 TGTATG TG--TG TGTGTG TGTGTG TGTGTG TGTGTG TGTGTG TGT-TG
1 TGTATG TGTATG TGTATG TGTATG TGTATG TGTATG TGTATG TGTATG
* * * * * *
154205 TGTGTG TGTGTG TGTGTG TGTGTG TGTGTG TGTA-- TGTATG TATATG
1 TGTATG TGTATG TGTATG TGTATG TGTATG TGTATG TGTATG TGTATG
* * * * * * *
154251 TATGTATG TGTGTG TGTGTG TGTGTG TG-GTG TGTGTG TGTGTG TGTGTG
1 --TGTATG TGTATG TGTATG TGTATG TGTATG TGTATG TGTATG TGTATG
* * * * *
154300 TGTGTG TGTGTG TTGTGTG TGTGTG TGTATG TGTATG TGTATG TATATG
1 TGTATG TGTATG -TGTATG TGTATG TGTATG TGTATG TGTATG TGTATG
*
154349 TATATG TATGTATG TGTATG TGTATG TGTATG TGTATG TGTATG TGTATG
1 TGTATG --TGTATG TGTATG TGTATG TGTATG TGTATG TGTATG TGTATG
154399 TGTATG TGTATG TGTATG TGTATG TGTATG TGTATG TGTATG TGTATG
1 TGTATG TGTATG TGTATG TGTATG TGTATG TGTATG TGTATG TGTATG
154447 TGTATG TGTATG TGTATG TGTATG TGTATG TGTATG TGTATG TGTATGTG
1 TGTATG TGTATG TGTATG TGTATG TGTATG TGTATG TGTATG TGTA--TG
154497 TGTATG TGTATG TGTATG TGTATG TGTATG TGTATG TGTATG TGTA--
1 TGTATG TGTATG TGTATG TGTATG TGTATG TGTATG TGTATG TGTATG
154543 TGTATG TGTA-G TGTA-- TGTATG TGTATG TGTATG TGTATG TGTA--
1 TGTATG TGTATG TGTATG TGTATG TGTATG TGTATG TGTATG TGTATG
154586 TGTATG TGTATG TGTATG TGTATG TGTATG TGTATG TGTATG TGTATG
1 TGTATG TGTATG TGTATG TGTATG TGTATG TGTATG TGTATG TGTATG
154634 TGTATG TGTATG TGTATG TGTATG TGTATG TGTATG TGTATG TGTATG
1 TGTATG TGTATG TGTATG TGTATG TGTATG TGTATG TGTATG TGTATG
*
154682 TGT-TA TGTATG TGTA-- TGT-TG TGTATG TGTATG TGTATG TGTATG
1 TGTATG TGTATG TGTATG TGTATG TGTATG TGTATG TGTATG TGTATG
154726 TGTA-- TGTATG TGTATG TGTATG TGTATG TGTATG TGTATG TGTATG
1 TGTATG TGTATG TGTATG TGTATG TGTATG TGTATG TGTATG TGTATG
154772 TGTATG TGTATG TGTA-- TGTATG TGTATG TGTATG TGTATG TGTATG
1 TGTATG TGTATG TGTATG TGTATG TGTATG TGTATG TGTATG TGTATG
154818 TGTATG TGTATG TGTATG TGTATG TGTA-- TGTATG TGTATG TGTATGTG
1 TGTATG TGTATG TGTATG TGTATG TGTATG TGTATG TGTATG TGTA--TG
154866 TGTATG TGTATG TGTATG TGTATG TGTATG TGTATG TGTATG TGTATG
1 TGTATG TGTATG TGTATG TGTATG TGTATG TGTATG TGTATG TGTATG
154914 TATGTATG TGTATG TGTA-- TGTATG TGTATG TGTATG TGTATG TGTATG
1 --TGTATG TGTATG TGTATG TGTATG TGTATG TGTATG TGTATG TGTATG
154962 TGTATG TGTATG TGTATG TGTATG TGTATG TGTATG TGTATG TGTATG
1 TGTATG TGTATG TGTATG TGTATG TGTATG TGTATG TGTATG TGTATG
155010 TGTATG TGTATG TGTATG TGTATG TGTATG TGTATG TGTATG TGTATG
1 TGTATG TGTATG TGTATG TGTATG TGTATG TGTATG TGTATG TGTATG
155058 TGTATG TGTATG TGTATG TGTATG TGTATG TGTATG TGTATG TGTATG
1 TGTATG TGTATG TGTATG TGTATG TGTATG TGTATG TGTATG TGTATG
155106 TGTATG TGTATG TGTATG TGTATG TGTATG TGTATG TGTATG TGTATG
1 TGTATG TGTATG TGTATG TGTATG TGTATG TGTATG TGTATG TGTATG
155154 TGTA-- TGTATG TGTATG TGTATG TGTATG TGTATG TGTATG TG--TG
1 TGTATG TGTATG TGTATG TGTATG TGTATG TGTATG TGTATG TGTATG
* * *
155198 -GTATG TGTA-G TG--TG TGTATG TGTATG TGTGTG TGTGTG TGTGTG
1 TGTATG TGTATG TGTATG TGTATG TGTATG TGTATG TGTATG TGTATG
*
155242 TGTATG TGTATG TGTATG TGTATG TTGTGTG TGGGTATG TGTATG TGTATG
1 TGTATG TGTATG TGTATG TGTATG -TGTATG T--GTATG TGTATG TGTATG
155293 TGTAGTG TGTATG TGTATG TG--TG TGTATG TGTATG TGTATG TGTATG
1 TGTA-TG TGTATG TGTATG TGTATG TGTATG TGTATG TGTATG TGTATG
155340 TGTATG TGTATG TGTATG -GTGATG TGTATG TGTATG TGTATG TGTATG
1 TGTATG TGTATG TGTATG TGT-ATG TGTATG TGTATG TGTATG TGTATG
155388 TGTA-G -GTATG TGTATG TGTATGTG TGTATG TGTATG TGT-TG TGTATG
1 TGTATG TGTATG TGTATG TGTA--TG TGTATG TGTATG TGTATG TGTATG
155435 TGTATG TGTATG TG--TG -GTATG TGTATGG TGTATG TGTATG TGTAT-
1 TGTATG TGTATG TGTATG TGTATG TGTAT-G TGTATG TGTATG TGTATG
155480 TGTATG TGTATG TGTATG TGTATG TGTATG TGTATG TGTATG TGTATG
1 TGTATG TGTATG TGTATG TGTATG TGTATG TGTATG TGTATG TGTATG
155528 TGTATG TGT-TG TGTATG TGTATG TGTATG TGTATG TGTATG TGTATG
1 TGTATG TGTATG TGTATG TGTATG TGTATG TGTATG TGTATG TGTATG
155575 TGTATG TATGTATG TGTATG TGTATG TGT-TG TGTATG TGTA-- TGTATG
1 TGTATG --TGTATG TGTATG TGTATG TGTATG TGTATG TGTATG TGTATG
155622 TGTATG TGTATG TGTATGTG TGTATG TG-ATG TGTATG -GTATG TGTATG
1 TGTATG TGTATG TGTA--TG TGTATG TGTATG TGTATG TGTATG TGTATG
155670 -GTATGTG TGTATG TGTATG TGTATG TGTATG TGTATG TG--TG TGTATG
1 TGTA--TG TGTATG TGTATG TGTATG TGTATG TGTATG TGTATG TGTATG
155717 TGT-TG TGT-TG TG--TG TGTATG TGT-TG TGTATG T-T-TG -GT-TG
1 TGTATG TGTATG TGTATG TGTATG TGTATG TGTATG TGTATG TGTATG
* *
155756 TGTATG TGTATG TGTATG TGTATATG TGTATG -GGATG TGT-TAA TGTATG
1 TGTATG TGTATG TGTATG TG--TATG TGTATG TGTATG TGTAT-G TGTATG
*
155805 TGTAT- TATATG TGTATG TG--TG TGTATG TGTAT- TGTA-- TGTATG
1 TGTATG TGTATG TGTATG TGTATG TGTATG TGTATG TGTATG TGTATG
155847 TGTATG TGTTATG TGTA-- TGTATG TGTATG TGTATG TGTATG TGTATG
1 TGTATG TG-TATG TGTATG TGTATG TGTATG TGTATG TGTATG TGTATG
*
155894 TGTATG TGTATG TGTATG TGTATG TGTA-- TGTATG TGTATG TGTATA
1 TGTATG TGTATG TGTATG TGTATG TGTATG TGTATG TGTATG TGTATG
*
155940 TGTATG TCTGTATA TGTATG T-T-TG TGTAT- TGTAT- TGTTATG TGTATG
1 TGTATG --TGTATG TGTATG TGTATG TGTATG TGTATG TG-TATG TGTATG
155987 TATGTATG TGTA-- TGTATG TGTATG TGTATG TGT-TG TGTATG TGTATG
1 --TGTATG TGTATG TGTATG TGTATG TGTATG TGTATG TGTATG TGTATG
*
156034 TGTATTG TGTATG TGTATG TGTA-- TATATG TGTATG TGTATG TGTATG
1 TGTA-TG TGTATG TGTATG TGTATG TGTATG TGTATG TGTATG TGTATG
* * * *
156081 TGTATG TGTATG TGTGTG TGTATG TGTATA TGTATG TATATG TGTATA
1 TGTATG TGTATG TGTATG TGTATG TGTATG TGTATG TGTATG TGTATG
* * *
156129 TGTATA TGTATA TGTATG TGTATG TGTATG TATGTGTG TGTATG TGTATG
1 TGTATG TGTATG TGTATG TGTATG TGTATG --TGTATG TGTATG TGTATG
* *
156179 T-TA-A TGTATG TGTATG TGTA-- TGTATG TGTATG TGTATG TAATGTCTG
1 TGTATG TGTATG TGTATG TGTATG TGTATG TGTATG TGTATG ---TGTATG
* * *
156226 TGTATG TATAT- TGTAT- AGTATG TATATG TGTATG TGTATG TGTATG
1 TGTATG TGTATG TGTATG TGTATG TGTATG TGTATG TGTATG TGTATG
156272 TGTATG TGTA-- TGTATG TGTATG TGTATG TGTATG TGTATG TGTATG
1 TGTATG TGTATG TGTATG TGTATG TGTATG TGTATG TGTATG TGTATG
* * * *
156318 TATGTG TATATA TGT-TG TGTATGTG TGTATTG TGTATG TGTATG TGTATG
1 TGTATG TGTATG TGTATG TGTA--TG TGTA-TG TGTATG TGTATG TGTATG
*
156368 TGTATG TGTATG TG--TG TGTATG TGTATG TGTATG TGTATA TGTA--
1 TGTATG TGTATG TGTATG TGTATG TGTATG TGTATG TGTATG TGTATG
* * * * *
156412 TGTATC TGTATA TGTATG TGTATA TGTATG T-TATA TGTA-- TATATG
1 TGTATG TGTATG TGTATG TGTATG TGTATG TGTATG TGTATG TGTATG
* * * * * *
156457 TGTATG TAT-TG TATGTATA TGTATG TATATG TATATG TATATG TATATG
1 TGTATG TGTATG --TGTATG TGTATG TGTATG TGTATG TGTATG TGTATG
156506 TATGTATG TGTATG TGTATG TGTATG TGTATG TGTATG TGTATG TGTATG
1 --TGTATG TGTATG TGTATG TGTATG TGTATG TGTATG TGTATG TGTATG
156556 TGTATGTG TGTATG TGTATG TGTATG TGTATG TGTATG TGTATG TGTATG
1 TGTA--TG TGTATG TGTATG TGTATG TGTATG TGTATG TGTATG TGTATG
*
156606 TGTATG TGTA-- TGTCTG TGTATG T-TATG TGT-TG TGTATG TGTATG
1 TGTATG TGTATG TGTATG TGTATG TGTATG TGTATG TGTATG TGTATG
*
156650 TGTATG T-TATG TGTATG TGTATG TGTATG TGTATA TGTATG TGTA--
1 TGTATG TGTATG TGTATG TGTATG TGTATG TGTATG TGTATG TGTATG
* *
156695 TATATG TGTATG TGTATGTG TGTATG TGTA-- TGTATG TGTATG T-TGTG
1 TGTATG TGTATG TGTA--TG TGTATG TGTATG TGTATG TGTATG TGTATG
* * *
156742 ATGTATG TGTATA TGTATG -GTATG T-TATG TGTATG TGTATA TGTATA
1 -TGTATG TGTATG TGTATG TGTATG TGTATG TGTATG TGTATG TGTATG
* * * *
156789 TGTATG TGTATG TGTATG GGTCTG TGTATGTG TGTCTA TGTATG TGTATG
1 TGTATG TGTATG TGTATG TGTATG TGTA--TG TGTATG TGTATG TGTATG
* *
156839 TATATG TG--TG TGTATG TGTA-- TGTATG T-TATG TGTAT- TGTATAT
1 TGTATG TGTATG TGTATG TGTATG TGTATG TGTATG TGTATG TGTAT-G
* * * * * * * *
156882 TATATA TGTATA TGATATG TGTATA T-CATA TGTATA TGTAT- TGTA-A
1 TGTATG TGTATG TG-TATG TGTATG TGTATG TGTATG TGTATG TGTATG
* *
156928 TGCATA TGTATG TGTATG TGTATG TGTATG T
1 TGTATG TGTATG TGTATG TGTATG TGTATG T
156959 AT
Statistics
Matches: 3858, Mismatches: 117, Indels: 440
0.87 0.03 0.10
Matches are distributed among these distances:
3 5 0.00
4 205 0.05
5 219 0.06
6 3235 0.84
7 68 0.02
8 121 0.03
9 5 0.00
ACGTcount: A:0.17, C:0.01, G:0.33, T:0.50
Consensus pattern (6 bp):
TGTATG
Found at i:153070 original size:9 final size:8
Alignment explanation
Indices: 153056--156872 Score: 933
Period size: 8 Copynumber: 472.2 Consensus size: 8
153046 TTACGTGTAC
153056 GTGTATTGT
1 GTGTA-TGT
153065 GTGTATGT
1 GTGTATGT
* *
153073 GTACGTGTAT
1 GT--GTATGT
153083 GTGTATGT
1 GTGTATGT
* *
153091 ATGTA--C
1 GTGTATGT
153097 GTGTATGT
1 GTGTATGT
* *
153105 GTATGTGT
1 GTGTATGT
*
153113 ATGTATGT
1 GTGTATGT
* *
153121 GTATGTGT
1 GTGTATGT
* * *
153129 ATGTGTAT
1 GTGTATGT
153137 GTGTATGT
1 GTGTATGT
*
153145 GTAT-TGT
1 GTGTATGT
* * *
153152 ATGTGTAT
1 GTGTATGT
153160 GTGTA--T
1 GTGTATGT
153166 GTGTATGT
1 GTGTATGT
* * *
153174 ATGTGTAT
1 GTGTATGT
153182 GTGTATGT
1 GTGTATGT
* *
153190 GTATGTGT
1 GTGTATGT
* * *
153198 ATGTGTAT
1 GTGTATGT
153206 GTGTATGT
1 GTGTATGT
* *
153214 GTATGTGT
1 GTGTATGT
* * *
153222 ATGTGTAT
1 GTGTATGT
153230 GTGTATGT
1 GTGTATGT
* *
153238 GTATGTGT
1 GTGTATGT
* * *
153246 ATGTGTAT
1 GTGTATGT
153254 GTGTATGT
1 GTGTATGT
* * *
153262 ATGTGTAT
1 GTGTATGT
153270 GTGTATGT
1 GTGTATGT
* *
153278 GTATGTGT
1 GTGTATGT
* * *
153286 ATGTGTAT
1 GTGTATGT
153294 GTGTATGT
1 GTGTATGT
* * *
153302 GTATGTAT
1 GTGTATGT
153310 GTGTATGT
1 GTGTATGT
* *
153318 GTATGTGT
1 GTGTATGT
* * *
153326 ATGTGTAT
1 GTGTATGT
153334 GTGTATGT
1 GTGTATGT
* *
153342 GTATGTGT
1 GTGTATGT
153350 GTGTATGT
1 GTGTATGT
* *
153358 GTAGTGTAT
1 GT-GTATGT
153367 GTGTATGT
1 GTGTATGT
* *
153375 GTATGTGT
1 GTGTATGT
* * *
153383 ATGTGTAT
1 GTGTATGT
153391 GTGTATGT
1 GTGTATGT
* *
153399 GTATGTGT
1 GTGTATGT
153407 GTGTATGT
1 GTGTATGT
* *
153415 GTATGTGTAT
1 G--TGTATGT
153425 GTGTATGT
1 GTGTATGT
* *
153433 GTATGTGTAT
1 G--TGTATGT
153443 GTGTATGT
1 GTGTATGT
* *
153451 GTATGTGT
1 GTGTATGT
* * *
153459 ATGTGTAT
1 GTGTATGT
153467 GTGTATGT
1 GTGTATGT
* *
153475 GTATGTGT
1 GTGTATGT
* * *
153483 ATGTGTAT
1 GTGTATGT
153491 GTGTATGT
1 GTGTATGT
* *
153499 GTATGTGT
1 GTGTATGT
*
153507 ATGTATGT
1 GTGTATGT
* *
153515 GTATGTGT
1 GTGTATGT
* * *
153523 ATGTGTAT
1 GTGTATGT
153531 GTGTATGT
1 GTGTATGT
* *
153539 GTATGTGT
1 GTGTATGT
* * *
153547 ATGTGTAT
1 GTGTATGT
153555 GTGTATGT
1 GTGTATGT
* *
153563 GTATGTGT
1 GTGTATGT
* * *
153571 ATGTGTAT
1 GTGTATGT
153579 GTGTATGT
1 GTGTATGT
* *
153587 GTATGTGT
1 GTGTATGT
* * *
153595 ATGTGTAT
1 GTGTATGT
153603 GTGTATGT
1 GTGTATGT
* *
153611 GTATGTGT
1 GTGTATGT
* * *
153619 ATGTGTAT
1 GTGTATGT
153627 GTGTATGT
1 GTGTATGT
* *
153635 GTATGTGT
1 GTGTATGT
* * *
153643 ATGTGTAT
1 GTGTATGT
153651 GTGTATGT
1 GTGTATGT
*
153659 GTTTATGT
1 GTGTATGT
* *
153667 GTATGTGT
1 GTGTATGT
* * *
153675 ATGTGTAT
1 GTGTATGT
153683 GTGTATGGT
1 GTGTAT-GT
* * *
153692 ATGTGTAT
1 GTGTATGT
153700 GTGTATGT
1 GTGTATGT
* *
153708 GTATGTGT
1 GTGTATGT
* * *
153716 ATGTGTAT
1 GTGTATGT
153724 GTGTATGT
1 GTGTATGT
153732 GTTGTATGT
1 G-TGTATGT
* *
153741 GTATGTGTAT
1 G--TGTATGT
153751 GTGTATGT
1 GTGTATGT
* *
153759 GTATGTGTAT
1 G--TGTATGT
153769 GTGTATGT
1 GTGTATGT
* *
153777 GTATGTGT
1 GTGTATGT
* * *
153785 ATGTGTAT
1 GTGTATGT
153793 GTGTATGT
1 GTGTATGT
* *
153801 GTATGTGT
1 GTGTATGT
* * *
153809 ATGTGTAT
1 GTGTATGT
153817 GTGTATGT
1 GTGTATGT
* *
153825 GTATGTGTT
1 GTGTATG-T
153834 GTGTATGT
1 GTGTATGT
* * *
153842 GTATGTAT
1 GTGTATGT
153850 GTGTATGT
1 GTGTATGT
* *
153858 GTATGTGT
1 GTGTATGT
* * *
153866 ATGTGTAT
1 GTGTATGT
153874 GTGTATGT
1 GTGTATGT
* *
153882 GTATGTGT
1 GTGTATGT
* * *
153890 ATGTGTAT
1 GTGTATGT
153898 GTGTATGT
1 GTGTATGT
* *
153906 GTATGTGT
1 GTGTATGT
* * *
153914 ATGTGTAT
1 GTGTATGT
153922 GTGTATGT
1 GTGTATGT
* *
153930 GTATGTGT
1 GTGTATGT
153938 GTGTATGT
1 GTGTATGT
* *
153946 GTATGTGTAT
1 G--TGTATGT
153956 GTGTATGT
1 GTGTATGT
* *
153964 GTATGTGT
1 GTGTATGT
* * *
153972 ATGTGTAT
1 GTGTATGT
153980 GTGTATGT
1 GTGTATGT
* *
153988 GTATGTGT
1 GTGTATGT
* * *
153996 ATGTGTAT
1 GTGTATGT
154004 GTGTATGT
1 GTGTATGT
* *
154012 GTATGTGT
1 GTGTATGT
* * *
154020 ATGTGTAT
1 GTGTATGT
154028 GTGTATGT
1 GTGTATGT
* *
154036 GTATGTGT
1 GTGTATGT
* * *
154044 ATGTGTAT
1 GTGTATGT
154052 GTGTATGT
1 GTGTATGT
* *
154060 GTGTGTAT
1 GTGTATGT
154068 GTGTATGT
1 GTGTATGT
* *
154076 GTATGTGAT
1 GTGTATG-T
154085 GTGTATGT
1 GTGTATGT
* *
154093 GTATGTGTAT
1 G--TGTATGT
154103 GTGTATGT
1 GTGTATGT
* *
154111 GTATGTGT
1 GTGTATGT
* * *
154119 ATGTGTAT
1 GTGTATGT
154127 GTGTATGT
1 GTGTATGT
* *
154135 GTGTGTAT
1 GTGTATGT
154143 GTGTATGT
1 GTGTATGT
* *
154151 GTATGTGT
1 GTGTATGT
154159 GTGTATGT
1 GTGTATGT
*
154167 GTGTGTGT
1 GTGTATGT
*
154175 GTGTGTGT
1 GTGTATGT
*
154183 GTGTGTGT
1 GTGTATGT
*
154191 GTGTGTGT
1 GTGTATGT
154199 GTGT-TGT
1 GTGTATGT
*
154206 GTGTGTGT
1 GTGTATGT
*
154214 GTGTGTGT
1 GTGTATGT
*
154222 GTGTGTGT
1 GTGTATGT
*
154230 GTGTGTGT
1 GTGTATGT
*
154238 ATGTA--T
1 GTGTATGT
*
154244 GTATATGT
1 GTGTATGT
*
154252 ATGTATGT
1 GTGTATGT
*
154260 GTGTGTGT
1 GTGTATGT
*
154268 GTGTGTGT
1 GTGTATGT
*
154276 GTGGTGTGT
1 GT-GTATGT
*
154285 GTGTGTGT
1 GTGTATGT
*
154293 GTGTGTGT
1 GTGTATGT
*
154301 GTGTGTGT
1 GTGTATGT
154309 GTGT-TGT
1 GTGTATGT
*
154316 GTGTGTGT
1 GTGTATGT
154324 GTGTATGT
1 GTGTATGT
* *
154332 GTATGTGT
1 GTGTATGT
* *
154340 ATGTATAT
1 GTGTATGT
*
154348 GTATATGT
1 GTGTATGT
*
154356 ATGTATGT
1 GTGTATGT
* *
154364 GTATGTGTAT
1 G--TGTATGT
154374 GTGTATGT
1 GTGTATGT
* *
154382 GTATGTGTAT
1 G--TGTATGT
154392 GTGTATGT
1 GTGTATGT
* *
154400 GTATGTGT
1 GTGTATGT
* * *
154408 ATGTGTAT
1 GTGTATGT
154416 GTGTATGT
1 GTGTATGT
* *
154424 GTATGTGT
1 GTGTATGT
* * *
154432 ATGTGTAT
1 GTGTATGT
154440 GTGTATGT
1 GTGTATGT
* *
154448 GTATGTGT
1 GTGTATGT
* * *
154456 ATGTGTAT
1 GTGTATGT
154464 GTGTATGT
1 GTGTATGT
* *
154472 GTATGTGT
1 GTGTATGT
* * *
154480 ATGTGTAT
1 GTGTATGT
154488 GTGTATGT
1 GTGTATGT
154496 GTGTA--T
1 GTGTATGT
154502 GTGTATGT
1 GTGTATGT
* *
154510 GTATGTGT
1 GTGTATGT
* * *
154518 ATGTGTAT
1 GTGTATGT
154526 GTGTATGT
1 GTGTATGT
* *
154534 GTATGTGT
1 GTGTATGT
*
154542 ATGTATGTGT
1 GTGTA--TGT
154552 AGTGTATGT
1 -GTGTATGT
* * *
154561 ATGTGTAT
1 GTGTATGT
154569 GTGTATGT
1 GTGTATGT
* *
154577 GTATGTGT
1 GTGTATGT
*
154585 ATGTATGT
1 GTGTATGT
* *
154593 GTATGTGTAT
1 G--TGTATGT
154603 GTGTATGT
1 GTGTATGT
* *
154611 GTATGTGT
1 GTGTATGT
* * *
154619 ATGTGTAT
1 GTGTATGT
154627 GTGTATGT
1 GTGTATGT
* *
154635 GTATGTGT
1 GTGTATGT
* * *
154643 ATGTGTAT
1 GTGTATGT
154651 GTGTATGT
1 GTGTATGT
* *
154659 GTATGTGT
1 GTGTATGT
* * *
154667 ATGTGTAT
1 GTGTATGT
154675 GTGTATGT
1 GTGTATGT
154683 GT-TATGTAT
1 GTGTATG--T
154692 GTGTATGTT
1 GTGTATG-T
154701 GTGTATGT
1 GTGTATGT
* *
154709 GTATGTGTAT
1 G--TGTATGT
154719 GTGTATGT
1 GTGTATGT
154727 GTATGTATGT
1 G--TGTATGT
* *
154737 GTATGTGT
1 GTGTATGT
* * *
154745 ATGTGTAT
1 GTGTATGT
154753 GTGTATGT
1 GTGTATGT
* *
154761 GTATGTGT
1 GTGTATGT
* * *
154769 ATGTGTAT
1 GTGTATGT
154777 GTGTATGT
1 GTGTATGT
* * *
154785 GTATGTAT
1 GTGTATGT
154793 GTGTATGT
1 GTGTATGT
* *
154801 GTATGTGT
1 GTGTATGT
* * *
154809 ATGTGTAT
1 GTGTATGT
154817 GTGTATGT
1 GTGTATGT
* *
154825 GTATGTGT
1 GTGTATGT
* * *
154833 ATGTGTAT
1 GTGTATGT
154841 GTGTATGT
1 GTGTATGT
* * *
154849 ATGTGTAT
1 GTGTATGT
154857 GTGTATGT
1 GTGTATGT
154865 GTGTATGT
1 GTGTATGT
* *
154873 GTATGTGTAT
1 G--TGTATGT
154883 GTGTATGT
1 GTGTATGT
* *
154891 GTATGTGT
1 GTGTATGT
* * *
154899 ATGTGTAT
1 GTGTATGT
154907 GTGTATGT
1 GTGTATGT
*
154915 ATGTATGT
1 GTGTATGT
* *
154923 GTATGTGT
1 GTGTATGT
*
154931 ATGTATGT
1 GTGTATGT
* *
154939 GTATGTGT
1 GTGTATGT
* * *
154947 ATGTGTAT
1 GTGTATGT
154955 GTGTATGT
1 GTGTATGT
* *
154963 GTATGTGT
1 GTGTATGT
* * *
154971 ATGTGTAT
1 GTGTATGT
154979 GTGTATGT
1 GTGTATGT
* *
154987 GTATGTGT
1 GTGTATGT
* * *
154995 ATGTGTAT
1 GTGTATGT
155003 GTGTATGT
1 GTGTATGT
* *
155011 GTATGTGT
1 GTGTATGT
* * *
155019 ATGTGTAT
1 GTGTATGT
155027 GTGTATGT
1 GTGTATGT
* *
155035 GTATGTGT
1 GTGTATGT
* * *
155043 ATGTGTAT
1 GTGTATGT
155051 GTGTATGT
1 GTGTATGT
* *
155059 GTATGTGT
1 GTGTATGT
* * *
155067 ATGTGTAT
1 GTGTATGT
155075 GTGTATGT
1 GTGTATGT
* *
155083 GTATGTGT
1 GTGTATGT
* * *
155091 ATGTGTAT
1 GTGTATGT
155099 GTGTATGT
1 GTGTATGT
* *
155107 GTATGTGT
1 GTGTATGT
* * *
155115 ATGTGTAT
1 GTGTATGT
155123 GTGTATGT
1 GTGTATGT
* *
155131 GTATGTGT
1 GTGTATGT
* * *
155139 ATGTGTAT
1 GTGTATGT
155147 GTGTATGT
1 GTGTATGT
* * *
155155 GTATGTAT
1 GTGTATGT
155163 GTGTATGT
1 GTGTATGT
* *
155171 GTATGTGT
1 GTGTATGT
* * *
155179 ATGTGTAT
1 GTGTATGT
155187 GTGTATGT
1 GTGTATGT
155195 GTGGTA--T
1 GT-GTATGT
155202 GTGTAGTGT
1 GTGTA-TGT
155211 GTGTA--T
1 GTGTATGT
155217 GTGTATGT
1 GTGTATGT
*
155225 GTGTGTGT
1 GTGTATGT
*
155233 GTGTGTGT
1 GTGTATGT
155241 GTGTATGT
1 GTGTATGT
* *
155249 GTATGTGTAT
1 G--TGTATGT
155259 GTGTATGT
1 GTGTATGT
*
155267 -TGTGTGT
1 GTGTATGT
*
155274 GGGTATGT
1 GTGTATGT
* *
155282 GTATGTGTAT
1 G--TGTATGT
155292 GTGTA-GT
1 GTGTATGT
155299 GTGTA--T
1 GTGTATGT
155305 GTGTATGT
1 GTGTATGT
* *
155313 GTGTGTAT
1 GTGTATGT
155321 GTGTATGT
1 GTGTATGT
* *
155329 GTATGTGT
1 GTGTATGT
* * *
155337 ATGTGTAT
1 GTGTATGT
155345 GTGTATGT
1 GTGTATGT
* *
155353 GTATGGTGAT
1 GTGT-ATG-T
155363 GTGTATGT
1 GTGTATGT
* *
155371 GTATGTGT
1 GTGTATGT
* * *
155379 ATGTGTAT
1 GTGTATGT
*
155387 GTGTAGGT
1 GTGTATGT
* * *
155395 ATGTGTAT
1 GTGTATGT
155403 GTGTATGT
1 GTGTATGT
155411 GTGTA--T
1 GTGTATGT
155417 GTGTATGT
1 GTGTATGT
* *
155425 GTTGTGTAT
1 G-TGTATGT
155434 GTGTA--T
1 GTGTATGT
155440 GTGTATGT
1 GTGTATGT
155448 GTGGTA--T
1 GT-GTATGT
155455 GTGTATG-
1 GTGTATGT
155462 GTGTA--T
1 GTGTATGT
155468 GTGTATGT
1 GTGTATGT
*
155476 GTAT-TGT
1 GTGTATGT
* * *
155483 ATGTGTAT
1 GTGTATGT
155491 GTGTA--T
1 GTGTATGT
155497 GTGTATGT
1 GTGTATGT
* *
155505 GTATGTGT
1 GTGTATGT
* * *
155513 ATGTGTAT
1 GTGTATGT
155521 GTGTATGT
1 GTGTATGT
* *
155529 GTATGTGTT
1 GTGTATG-T
155538 GTGTATGT
1 GTGTATGT
* *
155546 GTATGTGT
1 GTGTATGT
* * *
155554 ATGTGTAT
1 GTGTATGT
155562 GTGTATGT
1 GTGTATGT
* *
155570 GTATGTGT
1 GTGTATGT
*
155578 ATGTATGT
1 GTGTATGT
* * *
155586 ATGTGTAT
1 GTGTATGT
155594 GTGTATGT
1 GTGTATGT
* *
155602 GTTGTGTAT
1 G-TGTATGT
155611 GTGTATGT
1 GTGTATGT
* * *
155619 ATGTGTAT
1 GTGTATGT
155627 GTGTA--T
1 GTGTATGT
155633 GTGTATGT
1 GTGTATGT
155641 GTGTATGT
1 GTGTATGT
* *
155649 GATGTGTAT
1 G-TGTATGT
155658 G-GTATGT
1 GTGTATGT
155665 GTATGGTATGT
1 G--T-GTATGT
155676 GTGTATGT
1 GTGTATGT
* *
155684 GTATGTGT
1 GTGTATGT
* * *
155692 ATGTGTAT
1 GTGTATGT
155700 GTGTATGT
1 GTGTATGT
* *
155708 GTGTGTAT
1 GTGTATGT
155716 GTGT-TGT
1 GTGTATGT
*
155723 GT-TGTGT
1 GTGTATGT
155730 GTGTATGT
1 GTGTATGT
*
155738 GT-TGTGT
1 GTGTATGT
* *
155745 ATGTTTGGTT
1 GTGTAT-G-T
155755 GTGTATGT
1 GTGTATGT
* *
155763 GTATGTGTAT
1 G--TGTATGT
*
155773 GTGTATAT
1 GTGTATGT
*
155781 GTGTATGG
1 GTGTATGT
*
155789 GATGTGT-T
1 G-TGTATGT
*
155797 AATGTATGT
1 -GTGTATGT
* *
155806 GTATTATAT
1 GT-GTATGT
155815 GTGTATGT
1 GTGTATGT
* *
155823 GTGTGTAT
1 GTGTATGT
155831 GTGTATTGT
1 GTGTA-TGT
*
155840 ATGTA--T
1 GTGTATGT
155846 GTGTATGT
1 GTGTATGT
155854 GT-TATGT
1 GTGTATGT
155861 GTATGTATGT
1 G--TGTATGT
* *
155871 GTATGTGT
1 GTGTATGT
* * *
155879 ATGTGTAT
1 GTGTATGT
155887 GTGTATGT
1 GTGTATGT
* *
155895 GTATGTGT
1 GTGTATGT
* * *
155903 ATGTGTAT
1 GTGTATGT
155911 GTGTATGT
1 GTGTATGT
* * *
155919 GTATGTAT
1 GTGTATGT
155927 GTGTATGT
1 GTGTATGT
*
155935 GTATATGT
1 GTGTATGT
* *
155943 ATGTCTGTAT
1 GTGTATG--T
*
155953 ATGTATGT
1 GTGTATGT
* * *
155961 TTGTGTAT
1 GTGTATGT
155969 -TGTAT-T
1 GTGTATGT
155975 GT-TATGT
1 GTGTATGT
155982 GTATGTATGTAT
1 G--TGTATG--T
155994 GTGTATGT
1 GTGTATGT
* * *
156002 ATGTGTAT
1 GTGTATGT
156010 GTGTATGT
1 GTGTATGT
* *
156018 GTTGTGTAT
1 G-TGTATGT
156027 GTGTA--T
1 GTGTATGT
156033 GTGTAT-T
1 GTGTATGT
156040 GTGTA--T
1 GTGTATGT
156046 GTGTATGT
1 GTGTATGT
* *
156054 GTATATAT
1 GTGTATGT
156062 GTGTATGT
1 GTGTATGT
* *
156070 GTATGTGTAT
1 G--TGTATGT
156080 GTGTATGT
1 GTGTATGT
*
156088 GTATGTGTGT
1 G--TGTATGT
156098 GTGTATGT
1 GTGTATGT
*
156106 GTATATGT
1 GTGTATGT
* *
156114 ATGTATAT
1 GTGTATGT
*
156122 GTGTATAT
1 GTGTATGT
*
156130 GTATATGTAT
1 GTGTATG--T
*
156140 ATGTATGT
1 GTGTATGT
* *
156148 GTATGTGT
1 GTGTATGT
*
156156 ATGTATGT
1 GTGTATGT
* *
156164 GTGTGTAT
1 GTGTATGT
156172 GTGTATGTT
1 GTGTATG-T
*
156181 AATGTATGT
1 -GTGTATGT
* *
156190 GTATGTGT
1 GTGTATGT
*
156198 ATGTATGT
1 GTGTATGT
* *
156206 GTATGTGT
1 GTGTATGT
*
156214 ATGTAATGT
1 GTGT-ATGT
*
156223 CTG--TGT
1 GTGTATGT
* *
156229 ATGTATAT
1 GTGTATGT
156237 -TGTATAGT
1 GTGTAT-GT
* *
156245 ATGTATAT
1 GTGTATGT
156253 GTGTATGT
1 GTGTATGT
* *
156261 GTATGTGT
1 GTGTATGT
* * *
156269 ATGTGTAT
1 GTGTATGT
156277 GTGTATGT
1 GTGTATGT
* * *
156285 ATGTGTAT
1 GTGTATGT
156293 GTGTA--T
1 GTGTATGT
156299 GTGTATGT
1 GTGTATGT
* *
156307 GTATGTGT
1 GTGTATGT
*
156315 ATGTATGT
1 GTGTATGT
*
156323 GTATATATGTT
1 G--TGTATG-T
156334 GTGTATGT
1 GTGTATGT
156342 GTGTAT-T
1 GTGTATGT
156349 GTGTATGT
1 GTGTATGT
* *
156357 GTATGTGT
1 GTGTATGT
* * *
156365 ATGTGTAT
1 GTGTATGT
156373 GTGTATGT
1 GTGTATGT
* *
156381 GTGTGTAT
1 GTGTATGT
156389 GTGTA--T
1 GTGTATGT
156395 GTGTATGT
1 GTGTATGT
*
156403 GTATATGT
1 GTGTATGT
*
156411 ATGTATCTGTAT
1 GTGTA--TG--T
*
156423 ATGTATGT
1 GTGTATGT
*
156431 GTATATGT
1 GTGTATGT
* *
156439 ATGTTATAT
1 GTG-TATGT
* *
156448 GTATATAT
1 GTGTATGT
156456 GTGTATGT
1 GTGTATGT
*
156464 ATTGTATGTAT
1 -GTGTATG--T
*
156475 ATGTATGT
1 GTGTATGT
* * * *
156483 ATATGTAT
1 GTGTATGT
* *
156491 ATGTATAT
1 GTGTATGT
*
156499 GTATATGT
1 GTGTATGT
*
156507 ATGTATGT
1 GTGTATGT
* *
156515 GTATGTGT
1 GTGTATGT
* * *
156523 ATGTGTAT
1 GTGTATGT
156531 GTGTATGT
1 GTGTATGT
* *
156539 GTATGTGT
1 GTGTATGT
* * *
156547 ATGTGTAT
1 GTGTATGT
156555 GTGTATGT
1 GTGTATGT
156563 GTGTATGT
1 GTGTATGT
* *
156571 GTATGTGTAT
1 G--TGTATGT
156581 GTGTATGT
1 GTGTATGT
* *
156589 GTATGTGT
1 GTGTATGT
* * *
156597 ATGTGTAT
1 GTGTATGT
156605 GTGTATGT
1 GTGTATGT
* * *
156613 GTATGTCT
1 GTGTATGT
156621 GTGTATGT
1 GTGTATGT
* *
156629 -TATGTGTT
1 GTGTATG-T
156637 GTGTATGT
1 GTGTATGT
* *
156645 GTATGTGT
1 GTGTATGT
* *
156653 ATGT-TAT
1 GTGTATGT
156660 GTGTATGT
1 GTGTATGT
* *
156668 GTATGTGT
1 GTGTATGT
* * *
156676 ATGTGTAT
1 GTGTATGT
*
156684 ATGTATGT
1 GTGTATGT
* *
156692 GTATATAT
1 GTGTATGT
156700 GTGTA--T
1 GTGTATGT
156706 GTGTATGT
1 GTGTATGT
156714 GTGTATGT
1 GTGTATGT
156722 GTATGTATGT
1 G--TGTATGT
156732 GTATGT-TGT
1 G--TGTATGT
156741 GATGTATGT
1 G-TGTATGT
*
156750 GTATATGT
1 GTGTATGT
*
156758 ATGGTATGTT
1 GT-GTATG-T
* * *
156768 ATGTGTAT
1 GTGTATGT
*
156776 GTGTATAT
1 GTGTATGT
*
156784 GTATATGT
1 GTGTATGT
* * *
156792 ATGTGTAT
1 GTGTATGT
156800 GTGTATG-
1 GTGTATGT
*
156807 G-GTCTGT
1 GTGTATGT
* *
156814 GTATGTGT
1 GTGTATGT
*
156822 GTCTATGT
1 GTGTATGT
* * *
156830 ATGTGTAT
1 GTGTATGT
*
156838 GTATATGT
1 GTGTATGT
* *
156846 GTGTGTAT
1 GTGTATGT
156854 GTGTATGT
1 GTGTATGT
*
156862 ATGTTATGT
1 GTG-TATGT
156871 GT
1 GT
156873 ATTGTATATT
Statistics
Matches: 2669, Mismatches: 979, Indels: 320
0.67 0.25 0.08
Matches are distributed among these distances:
6 116 0.04
7 112 0.04
8 2042 0.77
9 179 0.07
10 198 0.07
11 14 0.01
12 8 0.00
ACGTcount: A:0.17, C:0.00, G:0.33, T:0.50
Consensus pattern (8 bp):
GTGTATGT
Found at i:156415 original size:4 final size:4
Alignment explanation
Indices: 156396--156514 Score: 59
Period size: 4 Copynumber: 30.8 Consensus size: 4
156386 TATGTGTATG
* * * * * * *
156396 TGTA TGTG TATA TGTA TGTA TCTG TATA TGTA TGTG TATA TGTA TGT-
1 TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA
* * * *
156443 TATA TGTA TATA TG-- TGTA TGTA TTGTA TGTA --TA TGTA TGTA TATG
1 TGTA TGTA TGTA TGTA TGTA TGTA -TGTA TGTA TGTA TGTA TGTA TGTA
* * * *
156488 TATA TGTA TATG TATA TGTA TGTA TGT
1 TGTA TGTA TGTA TGTA TGTA TGTA TGT
156515 GTATGTGTAT
Statistics
Matches: 84, Mismatches: 25, Indels: 12
0.69 0.21 0.10
Matches are distributed among these distances:
2 4 0.05
3 2 0.02
4 74 0.88
5 4 0.05
ACGTcount: A:0.27, C:0.01, G:0.21, T:0.51
Consensus pattern (4 bp):
TGTA
Found at i:156901 original size:11 final size:11
Alignment explanation
Indices: 156885--156951 Score: 50
Period size: 11 Copynumber: 6.0 Consensus size: 11
156875 TGTATATTAT
156885 ATATGTATATG
1 ATATGTATATG
*
156896 ATATGTGTATATC
1 ATA--TGTATATG
156909 ATATGTATATG
1 ATATGTATATG
156920 -TATTGTA-ATG
1 ATA-TGTATATG
*
156930 CATATGTATGTG
1 -ATATGTATATG
*
156942 -TATGTGTATG
1 ATATGTATATG
156952 TGTATGTAT
Statistics
Matches: 45, Mismatches: 5, Indels: 13
0.71 0.08 0.21
Matches are distributed among these distances:
10 13 0.29
11 18 0.40
12 4 0.09
13 10 0.22
ACGTcount: A:0.30, C:0.03, G:0.21, T:0.46
Consensus pattern (11 bp):
ATATGTATATG
Found at i:156913 original size:13 final size:13
Alignment explanation
Indices: 156875--156914 Score: 53
Period size: 13 Copynumber: 3.1 Consensus size: 13
156865 TTATGTGTAT
* *
156875 TGTATATTATATA
1 TGTATATCATATG
*
156888 TGTATATGATATG
1 TGTATATCATATG
156901 TGTATATCATATG
1 TGTATATCATATG
156914 T
1 T
156915 ATATGTATTG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
13 24 1.00
ACGTcount: A:0.33, C:0.03, G:0.15, T:0.50
Consensus pattern (13 bp):
TGTATATCATATG
Done.