Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01005465.1 Hibiscus syriacus cultivar Beakdansim tig00012516_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  81801

Tables:   1   

This is table  1  of  1  ( 34 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
9863--9932
6
10.9
7
86
10
64
2
0
11
85
0.69
9872--9922
6
8.8
6
89
10
72
1
0
11
86
0.66
9868--9924
30
1.9
30
88
0
87
1
0
12
85
0.66
9862--9930
12
5.7
12
81
6
77
2
0
11
85
0.70
9871--9932
1
62.0
1
73
0
52
3
0
9
87
0.66
12865--12925
25
2.5
24
84
12
79
65
3
16
14
1.40
15492--15538
24
1.9
25
86
4
69
40
8
21
29
1.83
18545--18583
20
2.0
20
89
0
60
20
5
15
58
1.55
30047--30080
11
2.9
11
91
8
50
38
0
2
58
1.13
31514--31557
2
22.0
2
100
0
88
50
0
0
50
1.00
34005--34042
20
1.9
20
89
10
60
42
15
0
42
1.47
36273--36412
46
3.1
47
74
15
150
42
1
1
54
1.18
36338--36382
18
2.5
19
79
13
60
40
0
0
60
0.97
36341--36382
17
2.4
18
76
15
52
40
0
0
59
0.97
36270--36441
88
1.9
88
80
8
195
44
1
2
51
1.24
36427--36534
43
2.5
42
84
6
135
53
0
4
40
1.28
36515--36564
17
3.2
17
67
21
54
58
0
0
42
0.98
40372--40502
55
2.4
56
84
6
176
25
23
17
33
1.96
40372--40537
56
3.0
56
79
11
171
25
23
17
33
1.96
40610--40704
42
2.3
41
83
1
127
34
22
20
23
1.96
40584--41071
216
2.3
217
92
2
804
31
20
15
32
1.94
41954--42065
31
3.6
31
95
0
197
39
23
18
18
1.92
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
46426--46550
31
4.0
31
92
2
198
37
22
19
20
1.94
48359--48564
35
5.9
34
88
4
261
22
20
21
35
1.96
48359--48569
34
6.0
35
86
4
250
22
20
21
35
1.96
54856--54896
21
2.0
21
95
0
73
19
12
21
46
1.82
60490--60618
49
2.7
49
95
1
233
41
20
12
25
1.87
63441--63502
30
2.1
29
96
3
115
59
0
4
35
1.19
63495--63534
16
2.5
16
95
0
71
35
2
0
62
1.09
71510--71559
10
5.0
10
82
0
55
26
30
0
44
1.55
71584--71628
23
2.0
22
83
12
56
31
0
4
64
1.13
71598--71636
18
2.2
18
95
4
71
33
0
2
64
1.08
73971--74055
35
2.5
33
81
14
100
27
8
9
55
1.60
77711--77786
23
3.3
23
81
0
89
30
25
25
19
1.98

Tables:   1

The End!