Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01005468.1 Hibiscus syriacus cultivar Beakdansim tig00012525_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  65496

Tables:   1   

This is table  1  of  1  ( 22 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
10652--10685
18
1.9
18
88
5
52
52
2
5
38
1.41
11584--11612
10
2.7
11
89
10
51
20
17
17
44
1.86
11597--11684
31
2.8
30
80
11
106
22
25
7
44
1.80
11585--11673
10
8.6
11
69
17
50
22
22
10
44
1.82
14638--14753
35
3.3
35
69
15
103
25
5
25
43
1.75
25044--25089
23
2.0
23
100
0
92
43
8
34
13
1.74
25962--26013
15
3.5
15
94
0
86
7
15
69
7
1.35
26661--26749
31
3.1
28
71
22
85
60
4
4
30
1.36
27719--27756
18
2.2
18
90
4
60
28
2
2
65
1.19
30837--30945
51
2.1
50
81
6
121
23
24
29
22
1.99
31144--31204
28
2.2
28
96
0
113
55
6
27
9
1.57
31395--31438
18
2.5
17
88
3
61
38
0
2
59
1.10
40748--40781
16
2.1
16
88
0
50
52
26
0
20
1.46
43607--43659
23
2.3
23
77
6
54
50
0
1
47
1.12
47625--47655
16
1.9
16
93
0
53
35
3
12
48
1.58
50162--50199
2
19.0
2
100
0
76
50
0
0
50
1.00
53236--53314
38
2.1
37
95
2
140
36
36
12
13
1.83
53959--54028
29
2.4
29
95
0
122
17
31
27
24
1.97
54139--54221
29
2.9
29
85
0
121
26
22
31
19
1.98
57176--57206
14
2.2
14
94
0
53
58
25
12
3
1.50
57190--57241
10
4.8
10
80
15
59
59
17
9
13
1.60
62202--62227
2
13.0
2
100
0
52
50
0
0
50
1.00

Tables:   1

The End!