Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01005469.1 Hibiscus syriacus cultivar Beakdansim tig00012527_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 45446
ACGTcount: A:0.33, C:0.17, G:0.16, T:0.33
Found at i:3152 original size:59 final size:60
Alignment explanation
Indices: 3089--3224 Score: 150
Period size: 60 Copynumber: 2.3 Consensus size: 60
3079 ATAGTCGGGT
* * * *
3089 GACCATTTTGTAATTTTTAACAGCGAG-GGACTCAACAAAGCAA-CGCCATATAGTCGATG
1 GACCATTTTGTAATTTTTAACAGCCAGTGGACTCAACAAAGCAATAGCC-TATAGTCAAGG
* * * * * *
3148 GACCATTATGTAACTTTTAATAGCCAGTGGATTCAACAAAGTAATATCCTATAGTCAAGG
1 GACCATTTTGTAATTTTTAACAGCCAGTGGACTCAACAAAGCAATAGCCTATAGTCAAGG
3208 GACCATTTGTGTAATTT
1 GACCATTT-TGTAATTT
3225 ACCCTAAAAT
Statistics
Matches: 62, Mismatches: 12, Indels: 4
0.79 0.15 0.05
Matches are distributed among these distances:
59 23 0.37
60 30 0.48
61 9 0.15
ACGTcount: A:0.34, C:0.18, G:0.18, T:0.30
Consensus pattern (60 bp):
GACCATTTTGTAATTTTTAACAGCCAGTGGACTCAACAAAGCAATAGCCTATAGTCAAGG
Found at i:6024 original size:23 final size:23
Alignment explanation
Indices: 5965--6024 Score: 63
Period size: 22 Copynumber: 2.6 Consensus size: 23
5955 GAATATTTTC
*
5965 TAATTTAATTATAATTTTAGATTT
1 TAATTTAA-TATAATTTTAAATTT
5989 T--TTTCAATATAATTTTCAAATTT
1 TAATTT-AATATAATTTT-AAATTT
6012 TAATTTAAT-TAAT
1 TAATTTAATATAAT
6025 ATTATTTTAA
Statistics
Matches: 31, Mismatches: 1, Indels: 9
0.76 0.02 0.22
Matches are distributed among these distances:
22 12 0.39
23 12 0.39
24 4 0.13
25 3 0.10
ACGTcount: A:0.38, C:0.03, G:0.02, T:0.57
Consensus pattern (23 bp):
TAATTTAATATAATTTTAAATTT
Found at i:6826 original size:32 final size:32
Alignment explanation
Indices: 6772--6832 Score: 86
Period size: 32 Copynumber: 1.9 Consensus size: 32
6762 ATAATTAAGC
* ** *
6772 GTTGAATTATTCAAATGTTGAATGATTCAAAT
1 GTTGAATGATTCAAATACTGAATAATTCAAAT
6804 GTTGAATGATTCAAATACTGAATAATTCA
1 GTTGAATGATTCAAATACTGAATAATTCA
6833 GAGACTCTGT
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
32 25 1.00
ACGTcount: A:0.39, C:0.08, G:0.15, T:0.38
Consensus pattern (32 bp):
GTTGAATGATTCAAATACTGAATAATTCAAAT
Found at i:6832 original size:16 final size:16
Alignment explanation
Indices: 6772--6819 Score: 87
Period size: 16 Copynumber: 3.0 Consensus size: 16
6762 ATAATTAAGC
*
6772 GTTGAATTATTCAAAT
1 GTTGAATGATTCAAAT
6788 GTTGAATGATTCAAAT
1 GTTGAATGATTCAAAT
6804 GTTGAATGATTCAAAT
1 GTTGAATGATTCAAAT
6820 ACTGAATAAT
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
16 31 1.00
ACGTcount: A:0.38, C:0.06, G:0.17, T:0.40
Consensus pattern (16 bp):
GTTGAATGATTCAAAT
Found at i:9467 original size:10 final size:10
Alignment explanation
Indices: 9452--9502 Score: 75
Period size: 10 Copynumber: 5.1 Consensus size: 10
9442 CATTTAAATA
9452 ATAAACGAAC
1 ATAAACGAAC
9462 ATAAACGAAC
1 ATAAACGAAC
** *
9472 ACGAACGAAT
1 ATAAACGAAC
9482 ATAAACGAAC
1 ATAAACGAAC
9492 ATAAACGAAC
1 ATAAACGAAC
9502 A
1 A
9503 ACACAATCAC
Statistics
Matches: 35, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
10 35 1.00
ACGTcount: A:0.59, C:0.20, G:0.12, T:0.10
Consensus pattern (10 bp):
ATAAACGAAC
Found at i:17401 original size:2 final size:2
Alignment explanation
Indices: 17394--17422 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
17384 AATAATTCAA
17394 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
17423 CAAAGTTTAC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:18241 original size:20 final size:20
Alignment explanation
Indices: 18218--18255 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
18208 CGGTACTGAC
18218 CCTTAAGTATCGATACTCCA
1 CCTTAAGTATCGATACTCCA
**
18238 CCTTGGGTATCGATACTC
1 CCTTAAGTATCGATACTC
18256 TACAACTAAT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.24, C:0.29, G:0.16, T:0.32
Consensus pattern (20 bp):
CCTTAAGTATCGATACTCCA
Found at i:19459 original size:2 final size:2
Alignment explanation
Indices: 19452--19498 Score: 67
Period size: 2 Copynumber: 23.5 Consensus size: 2
19442 GAGTAACTAA
* * *
19452 AT AT AT AT GT AT AT GT AT AT AT AT AC AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
19494 AT AT A
1 AT AT A
19499 CATAGTAGAA
Statistics
Matches: 39, Mismatches: 6, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
2 39 1.00
ACGTcount: A:0.47, C:0.02, G:0.04, T:0.47
Consensus pattern (2 bp):
AT
Found at i:22487 original size:65 final size:66
Alignment explanation
Indices: 22407--22563 Score: 185
Period size: 65 Copynumber: 2.4 Consensus size: 66
22397 CACACCCATT
* * * **
22407 TCGAGTGCATTTTGTGTACCGATGCACAAG-CTATGCATCGATGCACT-CTTGAATTTTTTGAAA
1 TCGAATGCATTTTGTGTACCGATGCACAAGACCATGCATCGATGCACTAC-AGAATCATTTGAAA
22470 CA
65 CA
* *
22472 TCGAATGCATTTTGTGTACCGATGCA-TAGACCATGCATCGATGCACTACAGGATCATTTGAAAC
1 TCGAATGCATTTTGTGTACCGATGCACAAGACCATGCATCGATGCACTACAGAATCATTTGAAAC
22536 A
66 A
* * * *
22537 TCGAATGTAATTAGTGTATCGATGCAC
1 TCGAATGCATTTTGTGTACCGATGCAC
22564 CCCTAGTGTA
Statistics
Matches: 78, Mismatches: 11, Indels: 5
0.83 0.12 0.05
Matches are distributed among these distances:
64 2 0.03
65 75 0.96
66 1 0.01
ACGTcount: A:0.29, C:0.20, G:0.20, T:0.31
Consensus pattern (66 bp):
TCGAATGCATTTTGTGTACCGATGCACAAGACCATGCATCGATGCACTACAGAATCATTTGAAAC
A
Found at i:25256 original size:15 final size:15
Alignment explanation
Indices: 25236--25267 Score: 64
Period size: 15 Copynumber: 2.1 Consensus size: 15
25226 GTCAATTTTG
25236 TGATAAAGGATACAA
1 TGATAAAGGATACAA
25251 TGATAAAGGATACAA
1 TGATAAAGGATACAA
25266 TG
1 TG
25268 TCTTATTTGA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.50, C:0.06, G:0.22, T:0.22
Consensus pattern (15 bp):
TGATAAAGGATACAA
Found at i:28043 original size:18 final size:17
Alignment explanation
Indices: 27986--28046 Score: 61
Period size: 18 Copynumber: 3.4 Consensus size: 17
27976 TGTCCCGAAT
27986 GACCACTATGTCCAGAAG
1 GACCACTATGTCCA-AAG
* *
28004 GATCACTATGTTTCGAAA-
1 GACCACTATG--TCCAAAG
28022 GACCACTATGTCCTAAAG
1 GACCACTATGTCC-AAAG
28040 GACCACT
1 GACCACT
28047 GATAATCCCT
Statistics
Matches: 35, Mismatches: 4, Indels: 8
0.74 0.09 0.17
Matches are distributed among these distances:
16 2 0.06
17 3 0.09
18 25 0.71
19 2 0.06
20 3 0.09
ACGTcount: A:0.33, C:0.26, G:0.18, T:0.23
Consensus pattern (17 bp):
GACCACTATGTCCAAAG
Found at i:34871 original size:21 final size:20
Alignment explanation
Indices: 34845--34906 Score: 67
Period size: 18 Copynumber: 3.1 Consensus size: 20
34835 GAATGACCAC
34845 TATGTCTAGAAGGACCACTGA
1 TATGTCT-GAAGGACCACTGA
*
34866 TATGTCCCGAAGGACCAC---
1 TATGT-CTGAAGGACCACTGA
34884 TATGTCCTGAAGGACCACTGA
1 TATGT-CTGAAGGACCACTGA
34905 TA
1 TA
34907 ATCCCTCGAC
Statistics
Matches: 35, Mismatches: 2, Indels: 8
0.78 0.04 0.18
Matches are distributed among these distances:
18 17 0.49
21 17 0.49
22 1 0.03
ACGTcount: A:0.31, C:0.24, G:0.23, T:0.23
Consensus pattern (20 bp):
TATGTCTGAAGGACCACTGA
Found at i:34875 original size:39 final size:39
Alignment explanation
Indices: 34829--34906 Score: 131
Period size: 39 Copynumber: 2.0 Consensus size: 39
34819 ACTGAATATT
*
34829 TGTCCCGAATGACCACTATGT-CTAGAAGGACCACTGATA
1 TGTCCCGAAGGACCACTATGTCCT-GAAGGACCACTGATA
34868 TGTCCCGAAGGACCACTATGTCCTGAAGGACCACTGATA
1 TGTCCCGAAGGACCACTATGTCCTGAAGGACCACTGATA
34907 ATCCCTCGAC
Statistics
Matches: 37, Mismatches: 1, Indels: 2
0.93 0.03 0.05
Matches are distributed among these distances:
39 35 0.95
40 2 0.05
ACGTcount: A:0.29, C:0.27, G:0.22, T:0.22
Consensus pattern (39 bp):
TGTCCCGAAGGACCACTATGTCCTGAAGGACCACTGATA
Found at i:35862 original size:22 final size:23
Alignment explanation
Indices: 35819--35867 Score: 57
Period size: 22 Copynumber: 2.2 Consensus size: 23
35809 ATCTCACTCA
35819 AATTCCAACATGTTCTAAATC-T
1 AATTCCAACATGTTCTAAATCTT
* *
35841 AATTCTAACAT-TTCGTATATCTT
1 AATTCCAACATGTTC-TAAATCTT
35864 AATT
1 AATT
35868 AAGTCGATGA
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
21 3 0.13
22 15 0.65
23 5 0.22
ACGTcount: A:0.35, C:0.18, G:0.04, T:0.43
Consensus pattern (23 bp):
AATTCCAACATGTTCTAAATCTT
Found at i:42439 original size:24 final size:24
Alignment explanation
Indices: 42407--42453 Score: 67
Period size: 24 Copynumber: 2.0 Consensus size: 24
42397 TCTACCAATT
**
42407 AAAGTTATGGTCAAAAATTAAAGA
1 AAAGTTATGACCAAAAATTAAAGA
*
42431 AAAGTTATGACCATAAATTAAAG
1 AAAGTTATGACCAAAAATTAAAG
42454 TTATAAGTGA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
24 20 1.00
ACGTcount: A:0.53, C:0.06, G:0.15, T:0.26
Consensus pattern (24 bp):
AAAGTTATGACCAAAAATTAAAGA
Found at i:42532 original size:162 final size:162
Alignment explanation
Indices: 42255--42603 Score: 501
Period size: 161 Copynumber: 2.2 Consensus size: 162
42245 TATCGATATT
* *
42255 GTCATAAATT-AAGAAAAAGTTACGACCATAAATTAAAGTTATAAGTGAATTTTATTTACTTTAT
1 GTCATAAATTAAAG-AAAAGTTATGACCATAAATTAAAGTTATAAGTGAATTTTATTAACTTTAT
* * * *
42319 GATTTACATTAATGGTGATAAAAATTGTATTCACTTCATATATATTTCACATTAATAGTGATAGA
65 GATTCACATTAATGGTGATAAAAACTATATTCACTTCATATATATTTCACATTAATAATGATAGA
* *
42384 TG-AAGGTTAATTT-TCTACCAATTAAAGTTATG
130 TGAAAGGTCAATTTCT-TACAAATTAAAGTTATG
*
42416 GTCAAAAATTAAAGAAAAGTTATGACCATAAATTAAAGTTATAAGTGAATTTT-TCGTAACTTTA
1 GTCATAAATTAAAGAAAAGTTATGACCATAAATTAAAGTTATAAGTGAATTTTAT--TAACTTTA
*
42480 TGATTCACATTAATGGTGAT-AAGACTATATTCACTTCATATATCATTTCACATTAATAATGATA
64 TGATTCACATTAATGGTGATAAAAACTATATTCACTTCATATAT-ATTTCACATTAATAATGATA
* *
42544 GGTGAAAGGTCAATTTCTTACAAATTAAAGTTGTG
128 GATGAAAGGTCAATTTCTTACAAATTAAAGTTATG
*
42579 GTCATAAATTAAAGAAAAGATATGA
1 GTCATAAATTAAAGAAAAGTTATGA
42604 TCATGAAGTT
Statistics
Matches: 168, Mismatches: 14, Indels: 10
0.88 0.07 0.05
Matches are distributed among these distances:
160 1 0.01
161 67 0.40
162 51 0.30
163 48 0.29
164 1 0.01
ACGTcount: A:0.41, C:0.09, G:0.13, T:0.37
Consensus pattern (162 bp):
GTCATAAATTAAAGAAAAGTTATGACCATAAATTAAAGTTATAAGTGAATTTTATTAACTTTATG
ATTCACATTAATGGTGATAAAAACTATATTCACTTCATATATATTTCACATTAATAATGATAGAT
GAAAGGTCAATTTCTTACAAATTAAAGTTATG
Found at i:43438 original size:202 final size:202
Alignment explanation
Indices: 43069--43626 Score: 600
Period size: 203 Copynumber: 2.8 Consensus size: 202
43059 ATAAGATTAT
* * * * * * ** *
43069 ATTCACTTCATATATCATTTCACA-TCATAATGGTAGGTGAAAGATCAATTTCTTATTAACTAAA
1 ATTCACTTCATATATTATTTCACATTAAT-ATGATAGGTGAAAGGTCGATTTCCTACCAATTAAA
* * *
43133 GTTGTTGTCATAAATTAAAGAAAAAATGATGACCGTAAATTAAAGTTATGATTGAATTTTTTTAA
65 GTTGTGGTCATAAATTAAAG-AAAAATTATGA-C-TAAATTAAAGTTATGAATGAATTTTTTTAA
* * * * *
43198 CTTTAT-ATTCACATTAATGGTGATAAAATTGTATTCATTTTATATAT-ATTTCAAATTAATGGT
127 CTTTATGATTCATATTAATGATGAT-AAATTGTATTCATTTCATATATCACTTCAAATTAATAGT
* * **
43261 GGTAAGAATTTT
191 AGTAACAATTGA
* *
43273 GTTCACTTCATATATTATTTCACATTAATAGTGATAGGTGAAAGGGCGATTTCCTACCAATTAAA
1 ATTCACTTCATATATTATTTCACATTAATA-TGATAGGTGAAAGGTCGATTTCCTACCAATTAAA
** * * *
43338 GTCATGGTCATAAATTAAAGAAAAGTTATGACTAAAAATAAA-TTATGAATGGATTTTTTTAACT
65 GTTGTGGTCATAAATTAAAGAAAAATTATGACT-AAATTAAAGTTATGAATGAATTTTTTTAACT
* *
43402 TTGTGATTCATGTTAATGATGATAAATTGTATTCATTTCATATATCACTTCAAATTAATAGTAGT
129 TTATGATTCATATTAATGATGATAAATTGTATTCATTTCATATATCACTTCAAATTAATAGTAGT
43467 AACAATTGA
194 AACAATTGA
* * * *
43476 ATTCACTTCATAT-CT-TTTCACATTAACA--AT-GGTAGCAAGGTCGGTTT-CTACCAATTAAA
1 ATTCACTTCATATATTATTTCACATTAATATGATAGGT-GAAAGGTCGATTTCCTACCAATTAAA
43535 GTTGTGGTCATAAATTAAAGAAAACATTATGACCGT-AATTAAAGTTAT-AAGTGAATTTTCTTT
65 GTTGTGGTCATAAATTAAAGAAAA-ATTATGA-C-TAAATTAAAGTTATGAA-TGAATTTT-TTT
*
43598 AACTTTATGATTCATATTAATTATGATAA
125 AACTTTATGATTCATATTAATGATGATAA
43627 GAACTGTATC
Statistics
Matches: 298, Mismatches: 44, Indels: 28
0.81 0.12 0.08
Matches are distributed among these distances:
197 37 0.12
198 26 0.09
199 12 0.04
200 30 0.10
201 12 0.04
202 46 0.15
203 57 0.19
204 32 0.11
205 46 0.15
ACGTcount: A:0.37, C:0.10, G:0.13, T:0.39
Consensus pattern (202 bp):
ATTCACTTCATATATTATTTCACATTAATATGATAGGTGAAAGGTCGATTTCCTACCAATTAAAG
TTGTGGTCATAAATTAAAGAAAAATTATGACTAAATTAAAGTTATGAATGAATTTTTTTAACTTT
ATGATTCATATTAATGATGATAAATTGTATTCATTTCATATATCACTTCAAATTAATAGTAGTAA
CAATTGA
Found at i:43850 original size:159 final size:162
Alignment explanation
Indices: 43470--43913 Score: 461
Period size: 159 Copynumber: 2.8 Consensus size: 162
43460 TAGTAGTAAC
* * * ** *
43470 AATTGAATTCACTTCATATCTTTTCACATTAACAATGGTAGC---AAGGTCGGTTTCTACCAATT
1 AATTGTATTCACTTTATATCTTTTCACATTAATAATGGTAGCTGAAAGGTCAATTTCTATCAATT
* * *
43532 AAAGTTGTGGTCAT-AAATTAAAGAAAACATTATGACCGTAATTAAAGTTATAAGTGAATTTTCT
66 AAAGTTGTGGTCATAAAATAAAAGAAAAAATTATGACCATAATTAAAGTTATAAGTGAATTTTCT
* *
43596 TTAACTTTATGATTCATATTAATTATGATAAG
131 TTAACTTTATGATTCACAATAATTATGATAAG
* ** *
43628 AACTGTA-TCACTTGATATATCATTTT-ACATTAATAATGACAAG-TGAAAGGTCAATTTTTTAT
1 AATTGTATTCACTT--TATATC-TTTTCACATTAATAATG-GTAGCTGAAAGGTCAA-TTTCTAT
* ** *
43690 CAATTAAAATTGTGGTCATAAAATAAAAGAAAAAATTATGATTATAATTAAAG-T-TGAGTGAAT
61 CAATTAAAGTTGTGGTCATAAAATAAAAGAAAAAATTATGACCATAATTAAAGTTATAAGTGAAT
43753 TTTCTTTAACTTTATGATTCACAATAA-TA-G-TAAAG
126 TTTCTTTAACTTTATGATTCACAATAATTATGAT-AAG
*
43788 AATTGTATTCACTTTATATCTTTTCACATTAATAATGGTAGCTGAAAGGTCTATTTCCTATCAAT
1 AATTGTATTCACTTTATATCTTTTCACATTAATAATGGTAGCTGAAAGGTCAATTT-CTATCAAT
* * * * * * *
43853 T-AAGTTGTTGTCAT-AAAT-TAA-AACAAATTATTACCATAAATTAAAATTATGAGTAAATTTT
65 TAAAGTTGTGGTCATAAAATAAAAGAAAAAATTATGACCAT-AATTAAAGTTATAAGTGAATTTT
43914 ACAACTTATT
Statistics
Matches: 236, Mismatches: 33, Indels: 34
0.78 0.11 0.11
Matches are distributed among these distances:
155 12 0.05
156 9 0.04
157 11 0.05
158 36 0.15
159 53 0.22
160 16 0.07
161 8 0.03
162 39 0.17
163 24 0.10
164 28 0.12
ACGTcount: A:0.39, C:0.10, G:0.12, T:0.39
Consensus pattern (162 bp):
AATTGTATTCACTTTATATCTTTTCACATTAATAATGGTAGCTGAAAGGTCAATTTCTATCAATT
AAAGTTGTGGTCATAAAATAAAAGAAAAAATTATGACCATAATTAAAGTTATAAGTGAATTTTCT
TTAACTTTATGATTCACAATAATTATGATAAG
Found at i:44013 original size:43 final size:43
Alignment explanation
Indices: 43925--44020 Score: 129
Period size: 43 Copynumber: 2.2 Consensus size: 43
43915 CAACTTATTA
* * * *
43925 TTCACATTAATGGTGATAAGATTGTATTTATTTTACATATTAT
1 TTCACATTAATGGTGATAAGATTGTATTCACTTCACATATCAT
* * *
43968 TTCAAATTAATGGTGATAAGATTGTGTTCACTTCATATATCAT
1 TTCACATTAATGGTGATAAGATTGTATTCACTTCACATATCAT
44011 TTCACATTAA
1 TTCACATTAA
44021 AATTAGTAGG
Statistics
Matches: 45, Mismatches: 8, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
43 45 1.00
ACGTcount: A:0.33, C:0.10, G:0.11, T:0.45
Consensus pattern (43 bp):
TTCACATTAATGGTGATAAGATTGTATTCACTTCACATATCAT
Found at i:44207 original size:39 final size:41
Alignment explanation
Indices: 44129--44229 Score: 116
Period size: 40 Copynumber: 2.4 Consensus size: 41
44119 AACTTTATGA
* *
44129 TTCATATTAATAGTGATAAGAATTATATTTACTTCATATAT
1 TTCAAATTAATAGTGATAACAATTATATTTACTTCATATAT
* *
44170 TTCAAATTAAT-GTGGTAACAATTATA-TTCCTTCATATAT
1 TTCAAATTAATAGTGATAACAATTATATTTACTTCATATAT
*
44209 CATCTCACATTAATAGTGATA
1 --T-TCAAATTAATAGTGATA
44230 GGTGATTTTT
Statistics
Matches: 50, Mismatches: 6, Indels: 6
0.81 0.10 0.10
Matches are distributed among these distances:
39 12 0.24
40 13 0.26
41 11 0.22
42 9 0.18
43 5 0.10
ACGTcount: A:0.38, C:0.12, G:0.08, T:0.43
Consensus pattern (41 bp):
TTCAAATTAATAGTGATAACAATTATATTTACTTCATATAT
Done.