genome.fa.s547.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000547.1 Hibiscus syriacus cultivar Beakdansim tig00001059_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  93152

Tables:   1   

This is table  1  of  1  ( 50 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2285--2338	23	2.3	23	75	6	56	31	22	12	33	1.92
2232--2435	64	3.1	64	76	14	191	32	22	17	27	1.96
6751--6788	20	1.9	19	89	5	58	65	5	5	23	1.34
7710--7774	16	3.8	17	78	11	71	35	10	9	44	1.71
7730--7784	17	3.3	17	71	19	53	34	10	10	43	1.75
15348--15401	20	2.7	20	100	0	108	31	14	25	27	1.95
15982--16020	16	2.3	17	86	8	53	64	28	0	7	1.21
16381--16459	23	3.7	21	83	8	88	35	17	17	29	1.93
22629--22675	24	2.0	24	95	0	85	23	4	6	65	1.33
27177--27220	14	3.1	14	78	12	54	18	4	4	72	1.19
38145--38214	12	5.8	12	80	6	79	51	18	15	14	1.77
38143--38251	48	2.3	47	85	3	137	47	17	16	18	1.83
38143--38251	24	4.5	25	78	6	109	47	17	16	18	1.83
40734--40765	7	4.4	7	92	7	55	25	28	34	12	1.92
40735--40781	8	6.5	8	79	20	59	21	25	38	14	1.92
40735--40781	15	3.3	15	91	5	71	21	25	38	14	1.92
40742--40786	13	3.3	13	90	6	63	17	24	42	15	1.88
42919--42988	12	5.8	12	80	6	79	51	18	15	14	1.77
42917--43025	48	2.3	47	85	3	137	47	17	16	18	1.83
42917--43025	24	4.5	25	78	6	109	47	17	16	18	1.83
45509--45542	15	2.3	15	94	0	59	26	26	32	14	1.95
45517--45555	8	5.4	8	77	22	50	20	25	38	15	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45517--45586	13	5.2	13	89	3	95	17	24	42	15	1.88
47242--47401	65	2.5	64	83	8	191	28	18	21	31	1.97
48062--48090	14	2.0	15	93	6	51	62	27	3	6	1.37
48779--48859	23	3.7	23	83	8	114	24	23	25	25	2.00
48784--48878	44	2.2	42	87	7	129	25	21	26	27	1.99
48784--48878	21	4.4	21	81	9	104	25	21	26	27	1.99
52954--53048	42	2.2	44	81	7	115	24	21	25	29	1.99
58744--58792	19	2.7	17	84	9	53	26	20	28	24	1.99
58764--58923	65	2.5	64	84	6	207	28	18	22	30	1.97
58764--58971	65	3.2	63	79	13	185	26	17	24	31	1.97
59269--59327	14	4.1	14	78	4	64	38	5	18	37	1.73
59272--59328	29	2.0	29	92	0	96	42	3	19	35	1.68
59429--59479	23	2.2	23	82	0	57	45	1	1	50	1.24
59467--59549	19	4.3	19	74	10	62	48	1	1	49	1.16
59583--59655	23	3.2	23	71	17	62	46	1	1	50	1.18
59646--59708	22	2.9	21	77	13	56	50	0	1	47	1.10
59676--59716	21	2.0	20	86	9	57	48	0	2	48	1.14
59709--59763	24	2.7	20	73	26	53	47	0	5	47	1.25
59922--60016	42	2.3	42	89	7	140	49	17	14	17	1.80
60920--60967	2	24.0	2	100	0	96	50	0	0	50	1.00
74625--74657	3	10.7	3	93	6	57	66	0	0	33	0.92
74890--75305	129	3.2	128	78	6	349	28	18	26	25	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
75057--75298	128	1.9	129	82	5	312	30	19	25	24	1.98
75394--75522	68	2.0	67	87	7	194	37	13	18	30	1.89
75424--75523	35	2.9	35	78	8	125	38	13	18	31	1.88
75542--75687	69	2.1	68	79	8	152	45	11	14	28	1.79
79490--79518	14	2.0	15	93	6	51	44	13	13	27	1.82
84522--84558	2	18.5	2	100	0	74	48	0	0	51	1.00

Tables:   1

The End!