genome.fa.s5470.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01005470.1 Hibiscus syriacus cultivar Beakdansim tig00012531_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  94757

Tables:   1   

This is table  1  of  1  ( 55 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1786--1820	18	2.1	17	89	10	54	65	5	14	14	1.44
7091--7381	41	7.1	41	74	10	202	35	15	19	28	1.93
7103--7302	82	2.4	82	83	3	242	37	16	19	27	1.92
9445--9469	11	2.3	11	100	0	50	32	8	24	36	1.84
9727--10202	223	2.1	227	93	4	831	44	7	8	39	1.63
10268--10736	177	2.6	179	87	4	631	42	14	16	26	1.87
10657--10703	20	2.4	19	82	10	67	53	10	17	19	1.72
10666--10708	20	2.3	19	88	11	63	51	11	16	20	1.75
12916--12959	21	2.1	21	91	0	70	40	11	31	15	1.83
14828--14876	19	2.6	19	93	0	80	30	2	10	57	1.43
14995--15944	397	2.4	398	94	1	1647	37	15	17	29	1.90
14995--15963	199	4.9	198	95	1	1674	37	15	17	29	1.91
17426--17513	6	14.7	6	81	0	59	37	10	32	19	1.85
17426--17489	18	3.6	18	82	0	92	39	12	32	15	1.85
17431--17485	12	4.6	12	82	8	76	36	14	34	14	1.87
17479--17517	3	13.0	3	88	0	60	35	2	33	28	1.71
17439--17516	12	6.2	12	79	8	75	35	10	33	20	1.86
18710--18743	16	2.1	16	94	0	59	47	5	20	26	1.73
19111--19177	3	22.7	3	90	3	109	35	0	1	62	1.04
21395--21467	23	3.2	23	88	0	101	34	4	21	39	1.73
21826--21898	23	3.2	23	88	0	101	34	4	21	39	1.73
21353--22924	431	3.7	431	97	1	2913	39	7	12	40	1.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
22257--22329	23	3.2	23	88	0	101	34	4	21	39	1.73
22694--22758	23	2.8	23	78	0	76	35	4	18	41	1.71
22694--22783	46	2.0	45	80	8	101	34	6	15	43	1.73
32523--32601	7	10.4	7	75	20	61	77	1	12	8	1.06
32521--32601	16	5.2	16	80	14	89	77	1	12	8	1.04
32520--32623	23	4.3	23	78	13	102	77	0	12	8	1.03
32519--32615	14	6.8	13	72	23	63	78	1	11	9	1.02
33840--34094	105	2.4	105	85	2	341	39	17	18	24	1.92
34269--34317	3	16.7	3	87	4	73	36	0	2	61	1.08
36522--36594	23	3.2	23	88	0	101	34	4	21	39	1.73
36953--37025	23	3.2	23	88	0	101	34	4	21	39	1.73
36480--38046	431	3.7	431	97	1	2904	39	7	12	40	1.71
37384--37456	23	3.2	23	88	0	101	34	4	21	39	1.73
37821--37885	23	2.8	23	78	0	76	35	4	18	41	1.71
40388--40433	22	2.1	23	84	8	60	50	4	4	41	1.42
40436--40495	29	2.1	28	84	9	77	40	0	10	50	1.36
48712--48744	15	2.2	16	89	10	52	21	12	6	60	1.53
48911--48940	15	2.0	15	100	0	60	40	0	0	60	0.97
62017--62189	38	4.6	38	66	25	93	44	11	21	22	1.84
61957--62216	55	4.7	55	96	0	484	44	11	21	22	1.84
62909--63059	72	2.1	73	93	2	261	37	13	25	23	1.91
66461--66709	125	2.0	125	84	3	322	32	16	25	24	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
67913--68063	37	4.1	37	91	1	232	33	22	17	25	1.96
67913--68089	73	2.4	73	85	4	232	33	22	19	24	1.97
68450--69068	54	11.5	54	94	0	1076	35	18	26	18	1.94
69070--69458	55	7.3	55	86	8	470	27	16	26	29	1.97
69103--69458	161	2.2	157	84	8	443	26	17	26	29	1.97
69178--69487	160	1.9	161	82	5	387	26	16	25	31	1.96
83354--83396	22	2.0	21	81	4	50	55	2	4	37	1.33
83756--83792	14	2.6	15	83	8	51	59	2	0	37	1.12
83817--83845	13	2.2	13	100	0	58	44	0	0	55	0.99
86468--86496	2	14.5	2	100	0	58	51	0	0	48	1.00
88901--89020	60	2.1	57	88	4	177	35	12	13	39	1.82

Tables:   1

The End!