Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01005472.1 Hibiscus syriacus cultivar Beakdansim tig00012535_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  106093

Tables:   1   

This is table  1  of  1  ( 51 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
11087--11181
49
1.9
49
81
8
113
65
5
5
24
1.34
13280--13318
18
2.2
18
90
4
62
64
2
2
30
1.21
13471--13609
50
2.8
51
77
7
142
24
30
28
16
1.97
13738--13800
25
2.5
25
72
12
65
47
1
11
39
1.49
13910--14001
27
3.5
26
66
7
69
50
6
2
41
1.40
14549--14593
14
3.2
15
75
18
51
35
8
0
55
1.31
22419--22444
4
6.5
4
100
0
52
76
0
0
23
0.78
23231--23292
24
2.7
23
80
9
63
22
9
14
53
1.70
32235--32285
26
1.9
26
84
4
66
39
0
15
45
1.47
40591--40635
16
2.8
16
89
3
72
53
0
0
46
1.00
45418--45448
14
2.2
14
94
0
53
38
12
0
48
1.42
45985--46043
10
5.7
10
73
15
57
57
20
11
10
1.63
45989--46037
16
3.1
16
93
0
89
57
22
12
8
1.61
46098--46213
31
3.7
31
96
1
205
34
28
15
21
1.94
46329--46370
11
3.7
11
79
17
50
23
26
26
23
2.00
46592--46638
23
2.0
23
100
0
94
34
4
27
34
1.77
51626--51652
3
9.0
3
100
0
54
33
0
0
66
0.92
56091--56120
13
2.3
13
100
0
60
33
23
20
23
1.97
58041--58141
30
3.5
30
69
13
104
48
11
6
32
1.67
58038--58147
55
2.0
55
100
0
220
47
12
9
30
1.73
58564--58612
14
3.8
14
71
20
52
12
12
18
57
1.65
58561--58612
24
2.2
24
92
0
86
13
11
17
57
1.64
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
58818--58889
23
3.1
23
78
4
90
11
9
19
59
1.58
59410--59474
30
2.1
31
88
2
96
55
0
3
41
1.15
59497--59578
30
2.7
30
81
7
87
59
0
4
35
1.19
59557--59596
12
3.4
12
89
3
64
75
0
0
25
0.81
59534--59609
23
3.2
24
75
14
79
65
0
0
34
0.93
59602--59634
17
2.0
17
88
5
50
60
0
3
36
1.12
59605--59678
24
3.0
24
84
11
87
54
0
4
41
1.19
59605--59678
25
3.0
26
82
11
93
54
0
4
41
1.19
60481--60549
30
2.3
30
82
2
86
21
18
15
43
1.88
61436--61496
32
1.9
32
93
0
104
18
13
16
52
1.75
64214--64358
15
9.7
15
93
0
227
31
26
11
31
1.92
65045--65085
20
2.0
20
95
0
73
31
17
9
41
1.82
68680--68762
3
27.7
3
82
0
85
8
36
24
31
1.85
68677--68756
27
3.0
27
100
0
160
10
37
22
30
1.87
68844--68917
33
2.2
33
100
0
148
37
20
27
14
1.92
70640--70861
111
2.0
111
95
0
399
45
10
7
36
1.67
71140--71265
50
2.5
50
76
5
130
23
27
33
15
1.95
73352--73397
23
2.0
23
100
0
92
39
0
17
43
1.49
74843--74886
14
3.0
14
87
12
70
15
22
13
47
1.81
74843--74886
16
2.9
16
93
6
74
15
22
13
47
1.81
75022--75058
8
4.9
8
83
12
51
29
10
8
51
1.65
78889--78948
16
3.9
16
93
4
97
16
21
13
48
1.80
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
82919--82967
24
2.0
24
100
0
98
28
8
20
42
1.80
90534--90603
31
2.3
31
89
0
104
30
27
10
32
1.89
93000--93036
18
2.1
18
100
0
74
48
10
10
29
1.72
93759--93786
6
4.7
6
100
0
56
35
32
17
14
1.90
95568--95603
17
2.1
17
94
0
63
33
13
22
30
1.93
96160--96189
3
10.0
3
100
0
60
33
0
0
66
0.92
97201--97230
2
15.0
2
100
0
60
50
0
0
50
1.00

Tables:   1

The End!