genome.fa.s5473.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01005473.1 Hibiscus syriacus cultivar Beakdansim tig00012546_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  73584

Tables:   1   

This is table  1  of  1  ( 48 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4446--4838	54	7.3	54	91	0	615	36	16	13	33	1.88
10211--10656	54	8.3	54	92	0	676	36	17	14	31	1.89
11101--11213	21	5.4	21	98	0	217	33	17	14	34	1.90
13520--13559	20	2.0	20	100	0	80	30	30	20	20	1.97
14236--14266	2	15.5	2	100	0	62	48	0	0	51	1.00
14752--14794	22	2.0	22	85	0	59	58	6	0	34	1.25
14854--15329	32	17.4	31	66	30	286	51	10	1	37	1.44
14837--15329	54	9.1	53	93	2	797	51	10	1	37	1.44
14886--14928	22	2.0	22	95	0	77	51	11	0	37	1.39
14888--14936	22	2.2	22	85	3	62	55	12	0	32	1.37
14942--14990	22	2.2	22	85	3	62	55	12	0	32	1.37
15048--15090	22	2.0	22	90	0	68	48	11	2	37	1.52
15102--15144	22	2.0	22	95	0	77	48	13	2	34	1.56
15104--15152	22	2.2	22	85	3	62	53	14	2	30	1.52
15156--15198	22	2.0	22	90	0	68	51	11	2	34	1.51
15210--15252	22	2.0	22	95	0	77	48	9	0	41	1.35
15212--15260	22	2.2	22	85	3	62	55	8	0	36	1.30
15232--15279	14	3.1	15	72	21	53	56	6	0	37	1.25
15264--15366	22	4.5	22	73	7	98	50	9	0	39	1.35
15309--15344	15	2.5	15	90	4	56	55	2	0	41	1.14
18787--18829	21	2.2	20	87	8	61	72	0	0	27	0.85
20298--20437	70	2.0	70	98	0	271	40	12	3	42	1.60
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
27293--27381	24	3.6	25	66	4	65	40	3	3	52	1.34
28561--28598	16	2.2	18	90	9	62	39	0	0	60	0.97
28787--28854	25	2.6	25	72	19	59	30	10	4	54	1.54
29193--29222	13	2.3	13	94	0	51	13	3	3	80	0.97
32110--32146	19	1.9	19	88	0	56	24	2	2	70	1.14
32614--32658	18	2.5	18	85	0	54	31	2	2	64	1.18
33562--33910	189	1.8	191	84	3	479	38	12	11	37	1.80
39114--39179	20	3.2	20	82	2	78	31	12	16	39	1.85
41830--41957	3	42.0	3	83	12	111	37	0	0	61	1.02
43287--43572	153	1.8	154	84	7	391	40	6	5	47	1.53
43551--43595	23	1.9	24	82	13	58	51	4	0	44	1.21
44134--44171	14	2.6	15	83	4	51	21	5	5	68	1.29
47493--47530	15	2.5	15	91	0	58	26	18	2	52	1.58
54327--54373	19	2.5	19	100	0	94	48	19	10	21	1.78
54872--54909	19	2.0	20	89	5	60	76	0	15	7	1.01
55266--55309	18	2.4	18	84	0	61	34	6	4	54	1.47
56252--56336	22	3.9	22	84	3	91	38	14	11	35	1.82
56719--57429	123	5.7	122	83	7	849	39	13	19	26	1.89
57790--57896	3	35.0	3	81	14	85	37	0	2	59	1.12
58006--58046	19	2.2	19	95	0	73	17	31	12	39	1.86
59370--59664	150	2.0	148	84	6	391	41	6	5	46	1.52
59657--59702	2	23.5	2	95	4	85	50	0	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
59410--59694	150	1.9	148	82	7	362	42	5	5	46	1.49
62053--62143	29	3.2	29	96	3	175	40	13	17	28	1.87
69823--69889	22	3.0	22	86	0	89	29	20	19	29	1.97
70532--70558	13	2.1	13	100	0	54	55	7	14	22	1.64

Tables:   1

The End!