genome.fa.s5474.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01005474.1 Hibiscus syriacus cultivar Beakdansim tig00012548_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  81635

Tables:   1   

This is table  1  of  1  ( 62 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3390--3429	14	3.0	13	82	7	53	35	0	5	60	1.19
10269--10923	329	2.0	329	97	0	1247	34	15	17	32	1.91
14816--14861	20	2.4	20	79	17	53	30	19	26	23	1.98
16295--16376	5	16.4	5	100	0	164	19	0	20	59	1.37
16530--16564	18	2.0	18	88	5	54	48	11	0	40	1.39
16791--16816	12	2.2	12	100	0	52	26	57	0	15	1.38
16772--16818	21	2.2	22	81	11	62	27	55	0	17	1.42
21186--21251	33	2.0	33	90	0	105	24	45	0	30	1.53
21285--21349	21	3.1	21	95	0	112	15	32	10	41	1.81
23584--23629	20	2.4	19	79	13	58	17	17	10	54	1.70
24941--24996	2	29.0	2	89	7	89	51	0	0	48	1.00
25178--25216	15	2.8	13	81	11	51	53	0	0	46	1.00
26538--26609	35	2.1	35	86	5	101	43	18	2	36	1.64
26988--27069	43	1.9	43	94	0	146	32	17	20	29	1.95
27078--27112	16	2.2	16	94	0	61	17	22	0	60	1.37
27205--27253	26	1.9	26	83	4	64	46	2	2	48	1.25
28162--28194	15	2.1	16	88	5	50	36	0	0	63	0.95
32665--33148	265	1.8	262	83	4	641	40	9	16	34	1.80
33330--33532	73	2.8	73	82	7	223	46	7	12	32	1.71
33346--33557	73	2.9	73	81	6	189	44	8	14	33	1.74
33523--33608	42	2.1	41	93	2	145	29	8	12	50	1.69
33523--33624	42	2.5	42	88	4	136	30	8	11	49	1.70
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33931--33979	23	2.1	23	96	0	89	24	16	14	44	1.84
33965--34319	99	3.6	100	84	3	441	36	15	9	38	1.79
33965--34323	199	1.8	198	85	4	508	36	15	9	38	1.80
34436--34709	132	2.1	135	84	6	362	37	12	10	39	1.78
34622--34661	20	2.0	20	90	4	64	45	12	7	35	1.70
34818--35188	77	4.9	76	80	5	374	36	16	8	37	1.80
39251--39386	40	3.4	40	87	4	202	36	17	20	25	1.95
39258--39386	20	6.4	20	87	5	181	36	17	20	24	1.95
39251--39408	20	7.9	20	84	5	126	34	18	20	26	1.96
40204--40257	24	2.2	24	90	0	81	22	18	18	40	1.91
40444--40480	14	2.6	14	91	4	56	51	21	21	5	1.68
40730--40893	82	2.0	82	100	0	328	39	12	19	29	1.88
42800--43149	20	18.7	20	73	16	214	36	20	20	22	1.95
42801--43015	54	4.0	54	67	13	136	38	20	20	20	1.94
42864--42973	34	3.2	34	94	0	184	39	18	21	20	1.93
43055--43182	33	3.6	33	76	14	121	34	21	21	21	1.97
43011--43192	73	2.5	75	84	7	221	35	21	20	22	1.96
43283--43362	30	2.4	34	80	20	114	55	15	3	26	1.57
43298--43363	30	2.2	30	100	0	132	54	13	3	28	1.54
44747--44854	42	2.6	42	79	5	121	22	17	37	22	1.94
45434--45500	20	3.3	20	85	4	91	19	20	25	34	1.96
45648--45697	18	2.8	18	100	0	100	42	6	20	32	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47432--47519	20	4.4	20	88	0	86	40	23	15	19	1.90
47452--47523	20	3.6	20	90	0	108	34	25	19	20	1.96
47941--47997	22	2.6	22	82	0	78	19	19	40	21	1.92
48162--48234	20	3.7	20	83	0	74	31	17	23	27	1.97
48204--48295	20	4.6	20	78	8	98	27	21	17	33	1.96
48204--48298	40	2.4	40	83	0	136	27	21	17	33	1.96
49800--49859	29	2.1	29	93	6	104	35	6	10	48	1.63
57079--57206	6	21.2	6	90	4	186	49	21	0	29	1.50
61132--61174	22	2.0	22	86	4	61	18	11	27	41	1.85
64974--65033	26	2.3	26	78	16	70	13	8	3	75	1.16
71135--71197	30	2.1	30	82	11	76	38	7	22	31	1.83
71299--71368	18	3.9	18	94	0	122	18	21	31	28	1.97
72214--72255	20	2.1	20	100	0	84	14	9	50	26	1.73
74235--74264	15	2.0	15	93	0	51	13	6	23	56	1.60
75464--75524	30	2.0	30	81	12	72	39	8	21	31	1.82
75626--75677	18	2.9	18	100	0	104	17	23	32	26	1.96
79800--79873	24	3.2	24	72	18	75	29	25	2	41	1.69
79799--79916	45	2.6	45	82	0	128	31	27	3	38	1.73

Tables:   1

The End!