genome.fa.s5477.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01005477.1 Hibiscus syriacus cultivar Beakdansim tig00012562_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  69997

Tables:   1   

This is table  1  of  1  ( 50 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5180--5238	26	2.2	27	82	11	77	59	13	1	25	1.44
10593--10629	2	19.5	2	83	10	51	45	0	0	54	1.00
14034--14145	46	2.3	49	86	6	167	22	12	16	49	1.79
19295--19340	2	23.5	2	95	4	85	47	0	0	52	1.00
19418--19466	17	2.8	18	80	20	59	24	2	6	67	1.24
19510--19537	11	2.5	11	100	0	56	14	17	0	67	1.22
19541--19571	3	10.3	3	100	0	62	32	0	0	67	0.91
19612--19767	13	12.2	12	68	19	50	14	9	1	74	1.15
19681--19734	28	2.0	28	85	3	74	14	3	3	77	1.04
19696--19773	19	4.2	19	79	9	72	14	8	0	76	1.00
19709--19757	18	2.7	18	78	12	55	16	10	0	73	1.09
19703--19775	36	2.0	38	86	5	105	13	10	0	75	1.05
19694--19810	55	2.1	55	82	6	139	13	9	2	74	1.17
19727--19821	18	5.2	18	76	12	61	13	10	3	72	1.23
19694--19813	27	4.4	27	73	7	98	13	9	2	75	1.15
22399--22647	95	2.7	95	84	7	295	30	18	20	31	1.96
23664--23709	21	2.2	21	100	0	92	26	15	26	32	1.95
23824--25574	84	20.9	84	82	3	1936	33	22	18	25	1.97
23824--25532	168	10.2	167	86	2	2190	33	22	18	25	1.97
23824--25415	503	3.2	501	90	1	2438	33	22	18	25	1.97
26381--26423	2	21.5	2	100	0	86	51	0	0	48	1.00
26921--27140	12	17.7	12	65	19	53	19	6	2	71	1.20
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
27089--27286	9	20.9	9	68	21	79	18	7	2	71	1.22
27005--27152	6	24.0	6	71	15	63	19	6	1	72	1.12
27042--27144	20	5.1	20	70	23	72	17	7	0	74	1.04
27216--27289	34	2.2	32	79	9	76	24	4	2	68	1.19
31533--31601	36	1.9	36	91	5	113	36	8	15	39	1.79
38546--38641	35	2.7	35	85	3	122	41	19	1	37	1.59
38922--39066	71	2.0	73	89	4	224	37	18	13	29	1.90
39065--39127	29	2.2	29	88	0	90	49	23	11	15	1.77
40172--40208	11	3.4	11	88	0	56	64	10	5	18	1.43
40166--40220	22	2.4	23	87	3	85	65	14	3	16	1.41
40107--40592	97	5.2	97	83	9	650	56	17	4	21	1.58
40265--40305	11	3.7	11	83	0	55	60	19	4	14	1.51
40263--40319	22	2.6	22	85	0	69	59	21	5	14	1.54
40183--40567	85	4.3	86	83	10	493	56	17	4	21	1.58
40348--40402	11	4.9	11	80	4	56	61	16	5	16	1.51
40348--40414	23	3.0	22	76	10	64	61	17	4	16	1.51
40350--40413	34	1.9	33	83	3	83	60	18	3	17	1.48
40114--40592	182	2.6	187	93	2	806	56	17	4	21	1.58
40450--40481	11	2.9	11	95	0	55	68	15	0	15	1.21
40536--40569	11	3.1	11	91	0	50	64	11	5	17	1.45
40359--40592	91	2.6	89	84	6	289	58	15	4	21	1.54
41520--41698	64	2.8	64	83	3	218	29	17	24	29	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48918--49096	64	2.8	63	82	8	209	29	18	24	28	1.98
62436--62465	3	9.7	3	92	7	51	0	0	33	66	0.92
64610--64734	45	2.8	45	80	0	133	37	4	27	31	1.75
64659--64732	24	3.2	24	72	18	75	41	2	25	29	1.69
64659--64753	45	2.1	45	82	0	109	40	5	24	30	1.77
68914--68965	18	2.9	18	100	0	104	26	32	23	17	1.96

Tables:   1

The End!