genome.fa.s5479.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01005479.1 Hibiscus syriacus cultivar Beakdansim tig00012565_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  211959

Tables:   1   

This is table  1  of  1  ( 87 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
178--222	12	3.5	13	82	11	58	48	8	2	40	1.47
2828--2873	3	15.3	3	82	8	58	65	2	0	32	1.05
2828--2873	18	2.5	18	86	10	67	65	2	0	32	1.05
5363--5446	42	2.0	42	92	0	141	27	13	15	44	1.83
11238--11279	22	2.0	21	81	13	50	45	7	11	35	1.69
15682--15726	23	2.0	23	86	0	63	66	0	2	31	1.04
17953--18015	28	2.2	28	86	5	83	50	1	9	38	1.44
29379--29431	24	2.2	24	83	12	65	69	3	5	20	1.25
37934--37986	16	3.3	16	71	7	54	47	24	13	15	1.81
38732--38840	32	3.4	32	73	14	100	33	25	15	24	1.95
39519--39557	19	2.0	21	85	10	55	76	5	10	7	1.13
40426--40512	10	8.4	10	81	7	84	57	16	11	14	1.65
40436--40514	20	3.8	20	88	5	104	54	15	13	16	1.72
48047--48088	2	21.0	2	100	0	84	50	0	0	50	1.00
51621--51654	15	2.3	15	89	0	50	50	44	5	0	1.26
54671--54695	13	1.9	13	100	0	50	24	12	24	40	1.88
54730--54781	8	6.2	8	84	8	50	55	1	0	42	1.10
54731--54768	2	19.5	2	89	5	60	55	0	0	44	0.99
54729--54768	13	3.0	13	89	7	62	55	0	0	45	0.99
61825--62112	144	2.0	144	100	0	576	35	25	22	17	1.95
70166--70198	2	16.5	2	100	0	66	48	0	0	51	1.00
70345--70370	5	5.2	5	100	0	52	0	0	19	80	0.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
80806--80849	23	1.9	23	85	0	61	68	0	4	27	1.09
86485--86561	20	3.8	20	98	0	145	38	10	25	24	1.87
87659--87716	27	2.1	28	87	6	82	18	8	25	46	1.78
99775--99821	14	3.0	15	72	22	51	19	8	14	57	1.63
123716--124084	20	18.5	20	85	4	458	34	26	18	20	1.96
124757--124803	24	2.0	24	87	8	69	25	14	21	38	1.92
124978--125002	12	2.1	12	100	0	50	72	0	28	0	0.86
127301--127625	19	18.4	19	80	16	396	47	17	20	14	1.83
127329--127647	109	3.0	104	92	5	532	46	16	21	14	1.83
127329--127647	52	6.0	52	92	4	541	46	16	21	14	1.83
127654--127755	19	5.6	19	85	12	151	14	23	17	44	1.86
127862--127898	14	2.6	14	91	0	65	45	21	0	32	1.52
127893--127964	12	6.0	12	67	23	53	56	16	1	25	1.48
127879--127951	38	1.9	38	97	0	137	53	16	1	28	1.51
129767--129901	19	7.6	19	76	16	137	45	24	19	10	1.81
129823--129879	14	3.7	14	77	20	60	45	24	21	8	1.80
129804--129896	33	2.8	33	98	0	177	47	22	20	9	1.79
129767--129901	52	2.5	54	75	18	131	45	24	19	10	1.81
129897--130025	19	7.3	19	75	17	125	8	17	28	45	1.77
129897--129988	33	2.8	33	93	3	150	7	18	28	45	1.76
130069--130448	93	4.1	93	98	0	744	46	18	12	22	1.83
130069--130448	185	2.0	186	98	0	744	46	18	12	22	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
132150--132239	14	5.7	14	74	23	81	42	23	25	8	1.83
132142--132256	33	3.5	33	95	0	212	45	20	24	9	1.81
132149--132261	19	6.8	18	72	23	88	43	22	24	9	1.83
132273--132327	14	3.6	14	73	21	56	9	27	23	40	1.85
132448--132518	33	2.2	33	92	0	115	47	18	22	11	1.80
132701--132755	22	2.5	22	81	0	74	20	16	40	23	1.91
132901--133094	20	9.6	20	81	5	212	19	20	25	35	1.95
132901--133094	60	3.2	60	82	0	244	19	20	25	35	1.95
133087--133163	21	3.7	20	70	13	57	27	16	23	32	1.96
133149--133200	20	2.6	20	96	0	95	21	13	26	38	1.90
137286--137339	3	18.0	3	100	0	108	33	0	0	66	0.92
138083--138124	20	2.1	20	90	0	66	35	19	14	30	1.91
140560--140650	26	3.3	28	82	14	109	18	0	8	72	1.10
140596--140657	26	2.4	26	97	0	115	17	0	9	72	1.10
147935--147972	19	2.1	19	85	5	51	39	5	0	55	1.23
148050--148126	33	2.4	32	87	8	104	11	12	31	44	1.79
150390--150464	23	3.2	24	79	5	82	40	16	20	24	1.91
152817--152928	58	1.9	59	85	5	156	35	19	1	42	1.62
153088--153271	60	3.1	59	81	7	201	38	4	23	33	1.76
154743--154775	16	2.0	17	88	5	50	66	0	0	33	0.92
155682--155721	13	3.1	13	81	0	53	37	22	17	22	1.94
156822--156891	28	2.4	30	84	15	78	37	24	2	35	1.70
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
156833--156891	28	2.1	29	90	9	95	38	20	1	38	1.63
161667--161702	2	18.0	2	94	0	63	50	2	0	47	1.15
162018--162058	15	2.7	15	84	0	55	7	9	2	80	0.99
165793--165857	19	3.4	19	85	12	87	15	21	29	33	1.94
165794--165857	9	6.7	9	87	8	83	14	21	29	34	1.93
165793--165857	30	2.2	29	91	5	105	15	21	29	33	1.94
165870--165906	13	2.8	13	95	0	65	16	45	18	18	1.85
165915--165980	29	2.3	29	83	0	78	24	9	25	40	1.84
168243--168337	2	48.0	2	97	2	183	50	0	0	49	1.00
171912--171952	17	2.4	17	100	0	82	34	24	24	17	1.96
173640--173685	2	23.0	2	100	0	92	50	0	0	50	1.00
183456--183495	2	20.0	2	100	0	80	50	0	0	50	1.00
187016--187048	16	2.1	16	100	0	66	57	24	12	6	1.57
187118--187182	16	4.1	16	89	0	103	58	21	10	9	1.59
187929--187976	10	4.4	10	78	19	51	54	22	12	10	1.68
187936--187991	14	4.3	13	78	21	64	51	23	14	10	1.73
187916--187984	24	2.9	24	91	4	104	56	18	11	13	1.66
191082--191141	31	1.9	31	83	6	77	41	6	3	48	1.46
195724--195765	18	2.3	18	80	16	50	54	2	0	42	1.13
197318--197358	21	2.0	21	90	4	66	63	7	12	17	1.50
199247--199271	13	1.9	13	100	0	50	40	12	0	48	1.40

Tables:   1

The End!