Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000548.1 Hibiscus syriacus cultivar Beakdansim tig00001060_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  76598

Tables:   1   

This is table  1  of  1  ( 24 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4879--4911
17
2.0
17
88
5
50
36
42
0
21
1.53
11977--12039
28
2.2
28
100
0
126
36
17
6
39
1.75
14868--14898
13
2.5
12
90
10
53
9
0
0
90
0.46
21378--21524
70
2.1
69
91
1
231
10
26
15
46
1.79
22649--22764
36
3.2
35
66
9
90
40
17
18
24
1.91
22596--22858
73
3.6
73
85
4
325
37
14
19
28
1.91
22612--22807
37
5.4
37
65
4
101
36
14
20
28
1.92
22844--22901
28
2.0
29
86
3
82
43
15
10
31
1.80
22909--22940
15
2.1
15
94
0
55
31
18
31
18
1.95
22921--23012
36
2.6
36
98
0
175
39
15
21
23
1.92
23017--23463
40
11.2
40
92
1
727
41
11
16
30
1.84
23180--23243
20
3.2
20
62
16
51
42
10
15
31
1.82
23320--23383
20
3.2
20
61
12
51
43
7
17
31
1.77
28342--28488
55
2.7
55
86
2
197
28
19
25
25
1.99
28331--28506
55
3.2
53
79
4
163
27
20
26
26
1.99
28559--28595
18
2.1
18
89
0
56
32
18
18
29
1.96
38520--38575
21
2.7
21
100
0
112
23
23
21
32
1.98
43691--43743
17
3.1
17
88
0
79
37
15
5
41
1.70
44979--45024
20
2.3
19
85
14
58
50
8
15
26
1.73
54695--54843
55
2.7
55
86
0
208
27
18
22
31
1.97
60230--60259
12
2.4
13
94
5
53
73
6
0
20
1.05
60527--60669
55
2.6
55
88
0
214
29
21
16
32
1.96
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
65372--65474
17
5.9
17
69
10
66
40
13
5
39
1.69
66862--66897
18
2.1
17
94
5
63
36
5
33
25
1.79

Tables:   1

The End!