genome.fa.s5480.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01005480.1 Hibiscus syriacus cultivar Beakdansim tig00012566_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  84554

Tables:   1   

This is table  1  of  1  ( 48 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7091--7128	18	2.2	17	95	4	67	31	0	2	65	1.06
9160--9185	3	8.7	3	100	0	52	34	30	34	0	1.58
9418--9502	35	2.5	33	81	14	100	27	8	9	55	1.60
13144--13225	23	3.6	23	79	0	92	34	25	21	18	1.96
20843--20900	22	2.4	25	77	11	68	53	3	0	43	1.17
20878--20967	47	1.9	47	82	8	112	62	4	1	32	1.22
21130--21178	25	2.0	25	91	0	80	42	8	10	38	1.68
21295--21347	25	2.1	25	82	3	61	43	9	5	41	1.61
21560--21606	24	2.0	24	83	8	60	29	4	6	59	1.41
22047--22112	2	33.5	2	80	11	75	48	1	1	48	1.20
22361--22394	2	17.0	2	100	0	68	50	0	0	50	1.00
23078--23117	21	1.9	21	89	0	62	60	0	0	40	0.97
25558--25635	38	2.1	38	92	0	129	32	19	15	33	1.93
26125--26168	19	2.3	19	100	0	88	36	22	9	31	1.86
28722--28768	21	2.2	22	81	11	62	38	12	19	29	1.89
29516--29574	22	2.7	22	97	0	109	45	16	3	33	1.64
33524--33596	24	3.0	24	81	0	101	53	16	9	20	1.70
36347--36387	21	2.0	21	85	9	57	53	21	14	9	1.70
44799--45823	347	3.0	346	98	0	1996	37	19	13	30	1.90
49516--49593	31	2.5	30	85	8	102	23	11	12	52	1.72
49736--49813	35	2.3	34	86	6	106	34	2	8	53	1.46
51975--52004	16	1.9	16	93	6	53	53	13	10	23	1.69
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52328--52363	11	3.3	11	85	14	56	75	11	0	13	1.06
52328--52373	22	2.1	22	91	0	74	76	8	0	15	1.02
53282--53594	78	4.1	78	74	8	300	37	17	16	28	1.92
53287--53591	39	7.9	39	76	5	244	37	17	17	27	1.92
53287--53660	190	2.0	190	90	1	588	37	16	17	28	1.91
53572--53819	78	3.3	77	82	8	296	39	12	15	32	1.86
53821--53951	65	2.0	65	88	2	192	37	15	19	28	1.92
54093--54163	37	1.9	37	88	2	108	32	15	19	32	1.93
57854--57921	30	2.2	30	79	7	75	73	7	1	17	1.13
58590--58719	37	3.8	33	81	8	143	40	3	40	16	1.66
58590--58690	37	2.8	36	88	5	145	43	2	39	13	1.60
59499--59550	20	2.5	21	81	12	63	30	1	32	34	1.69
61069--61105	20	1.9	19	89	10	58	45	10	24	18	1.81
66214--66314	44	2.3	43	85	11	143	40	8	9	40	1.70
66576--66673	43	2.2	44	83	1	117	43	7	11	37	1.68
66423--67026	206	3.0	206	79	8	550	41	10	9	38	1.73
66825--67365	164	3.3	161	79	8	530	39	11	9	39	1.74
67512--67620	43	2.5	43	82	2	130	44	11	8	35	1.70
66259--67774	738	2.1	727	83	4	1886	39	12	9	38	1.75
67151--67774	206	3.0	207	82	2	722	38	12	10	37	1.78
68391--68437	24	2.0	24	86	0	67	25	14	6	53	1.65
68239--68593	164	2.2	165	89	3	545	36	12	9	41	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
75966--76025	18	3.0	20	74	11	70	25	18	26	30	1.98
75948--76025	39	2.0	39	92	5	131	23	19	26	30	1.98
75952--76025	18	3.9	18	74	10	67	22	18	28	29	1.98
82734--82790	18	3.2	18	79	0	60	26	19	24	29	1.98

Tables:   1

The End!