Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01005481.1 Hibiscus syriacus cultivar Beakdansim tig00012567_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  64573

Tables:   1   

This is table  1  of  1  ( 54 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
316--376
21
3.0
20
69
7
59
22
42
11
22
1.86
1784--1821
13
2.8
14
84
4
51
36
0
15
47
1.46
1960--2024
19
3.7
19
84
15
95
46
18
21
13
1.84
2014--2085
20
3.7
20
84
1
83
15
22
22
40
1.91
2469--2523
21
2.6
21
100
0
110
14
16
25
43
1.86
2453--2543
21
4.5
19
82
8
65
19
17
26
36
1.94
2532--2582
19
2.6
19
81
6
57
23
23
15
37
1.93
2572--2624
21
2.5
21
76
11
56
33
18
24
22
1.97
3231--3269
17
2.4
17
82
4
53
64
2
5
28
1.28
3256--3302
12
3.8
12
86
8
67
78
2
0
19
0.85
3634--3715
36
2.3
37
77
10
89
42
4
3
48
1.42
4962--5023
30
2.1
30
96
3
117
37
6
9
46
1.62
5579--5633
5
11.0
5
96
0
92
0
20
3
76
0.94
6785--6819
18
1.9
18
88
0
52
22
0
5
71
1.07
6991--7021
14
2.2
14
94
0
53
25
0
9
64
1.24
8936--8977
22
2.0
21
86
9
59
23
21
23
30
1.99
14030--14142
21
5.4
21
86
5
124
42
19
22
15
1.89
16474--16560
2
43.5
2
100
0
174
49
0
0
50
1.00
16787--16881
6
15.2
6
71
19
61
73
0
20
6
1.04
16789--16857
11
5.8
12
75
13
63
76
0
20
2
0.91
16795--16838
17
2.6
16
79
10
52
79
0
15
4
0.89
16766--16858
12
7.8
11
70
14
60
74
0
21
4
0.99
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
16796--16858
24
2.7
23
83
9
83
77
0
19
3
0.90
16787--16857
29
2.4
28
78
21
83
76
0
21
2
0.92
16851--16880
16
1.9
16
93
6
53
66
0
20
13
1.24
18141--18444
124
2.4
124
92
1
484
32
17
27
23
1.96
19165--19394
36
6.4
36
88
1
291
36
23
19
21
1.95
19162--19394
108
2.1
109
86
2
326
36
23
18
21
1.95
19591--20768
51
22.5
51
79
10
1004
33
19
24
22
1.97
19591--20761
260
4.5
260
85
5
1312
33
19
24
22
1.97
19591--20775
156
7.5
156
81
8
1161
33
19
24
22
1.97
19591--20812
311
3.9
316
80
9
997
32
19
24
23
1.97
20764--21479
55
13.2
55
83
6
773
31
14
26
27
1.95
20764--21479
108
6.6
109
84
5
792
31
14
26
27
1.95
26393--26424
16
2.0
16
93
0
55
28
18
21
31
1.97
26933--26972
18
2.3
18
91
4
64
40
0
0
60
0.97
27850--28073
53
4.3
53
97
1
425
20
20
18
41
1.91
34126--34361
115
2.0
113
95
3
391
41
19
13
25
1.88
44369--44405
17
2.2
17
90
0
56
43
2
13
40
1.58
44364--44406
17
2.6
16
78
10
50
39
2
13
44
1.57
44274--44533
85
3.1
85
90
0
394
37
9
12
40
1.75
45214--45277
30
2.1
31
82
11
78
43
7
12
35
1.71
45618--45658
21
1.9
22
90
5
66
36
9
2
51
1.48
49574--49604
3
10.3
3
100
0
62
32
32
0
35
1.58
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
54888--54930
21
2.0
21
95
0
77
27
9
11
51
1.69
55261--55303
21
2.0
21
95
0
77
18
30
13
37
1.90
59069--59102
9
3.7
9
88
4
50
14
0
11
73
1.10
59069--59112
19
2.3
19
88
7
63
13
2
11
72
1.21
59475--59509
17
2.1
17
94
0
61
25
5
8
60
1.49
59474--59515
17
2.3
18
84
12
59
28
4
7
59
1.44
59511--59667
82
1.9
83
88
2
235
25
16
10
47
1.79
59721--59768
21
2.3
21
81
0
60
39
0
2
58
1.10
59797--59866
33
2.1
33
81
0
77
48
21
0
30
1.50
61511--61558
23
2.1
23
84
0
60
37
8
14
39
1.76

Tables:   1

The End!