Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01005482.1 Hibiscus syriacus cultivar Beakdansim tig00012568_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 43218
ACGTcount: A:0.33, C:0.16, G:0.17, T:0.34
Found at i:7934 original size:16 final size:16
Alignment explanation
Indices: 7915--7948 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
7905 AATTAATATG
7915 AAAATAAAATAAAATA
1 AAAATAAAATAAAATA
* *
7931 AAAATATAATAAATTA
1 AAAATAAAATAAAATA
7947 AA
1 AA
7949 TCTATTATAG
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.76, C:0.00, G:0.00, T:0.24
Consensus pattern (16 bp):
AAAATAAAATAAAATA
Found at i:10460 original size:8 final size:9
Alignment explanation
Indices: 10442--10498 Score: 53
Period size: 10 Copynumber: 6.0 Consensus size: 9
10432 ATTTTCATCA
10442 TAATATTAT
1 TAATATTAT
10451 TAAT-TTAT
1 TAATATTAT
10459 TAATATTTAT
1 TAATA-TTAT
10469 AATAATATTAT
1 --TAATATTAT
* *
10480 ATTATATTTT
1 -TAATATTAT
10490 TAATATTAT
1 TAATATTAT
10499 ATAAAATAAT
Statistics
Matches: 40, Mismatches: 4, Indels: 8
0.77 0.08 0.15
Matches are distributed among these distances:
8 8 0.20
9 11 0.28
10 12 0.30
11 4 0.10
12 5 0.12
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58
Consensus pattern (9 bp):
TAATATTAT
Found at i:10482 original size:34 final size:31
Alignment explanation
Indices: 10448--10612 Score: 86
Period size: 31 Copynumber: 5.5 Consensus size: 31
10438 ATCATAATAT
10448 TATTA-ATTTATTAATATT-TATAATAATATTA
1 TATTATATTT-TTAATATTATATAA-AATATTA
*
10479 TATTATATTTTTAATATTATATAAAATAATCA
1 TATTATATTTTTAATATTATATAAAAT-ATTA
* * *
10511 -ATTATA-TTATAATA--ATATTAGATATTA
1 TATTATATTTTTAATATTATATAAAATATTA
* * * *
10538 TTTTTTTTATTTTAATAATATATAATAAT-TT-
1 TATTATAT-TTTTAATATTATATAA-AATATTA
* *
10569 T-TTATATATTTAATA--ATGA-ATAATATTA
1 TATTATATTTTTAATATTAT-ATAAAATATTA
10597 T-TTATATATTTTAATA
1 TATTATAT-TTTTAATA
10613 ATTTTTTAAT
Statistics
Matches: 105, Mismatches: 16, Indels: 28
0.70 0.11 0.19
Matches are distributed among these distances:
26 3 0.03
27 8 0.08
28 18 0.17
29 14 0.13
30 18 0.17
31 23 0.22
32 19 0.18
33 2 0.02
ACGTcount: A:0.44, C:0.01, G:0.01, T:0.55
Consensus pattern (31 bp):
TATTATATTTTTAATATTATATAAAATATTA
Found at i:10487 original size:22 final size:20
Alignment explanation
Indices: 10456--10500 Score: 56
Period size: 19 Copynumber: 2.1 Consensus size: 20
10446 ATTATTAATT
10456 TATTAATATTTATAATAATATTA
1 TATTAATATTT-T--TAATATTA
10479 TATT-ATATTTTTAATATTA
1 TATTAATATTTTTAATATTA
10498 TAT
1 TAT
10501 AAAATAATCA
Statistics
Matches: 22, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
19 11 0.50
21 1 0.05
22 6 0.27
23 4 0.18
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58
Consensus pattern (20 bp):
TATTAATATTTTTAATATTA
Found at i:10502 original size:29 final size:29
Alignment explanation
Indices: 10441--10612 Score: 99
Period size: 30 Copynumber: 5.9 Consensus size: 29
10431 CATTTTCATC
10441 ATAATA-T-TATTA-ATTTATTAATATTTAT
1 ATAATATTATATTATATTT-TTAATA-TTAT
10469 AATAATATTATATTATATTTTTAATATTAT
1 -ATAATATTATATTATATTTTTAATATTAT
* * * *
10499 ATAAAATAATCAATTATA-TTATAATAATAT
1 ATAATATTAT--ATTATATTTTTAATATTAT
* * * *
10529 -TAGATATTATTTTTTTTATTTTAATAATAT
1 ATA-ATATTATATTATAT-TTTTAATATTAT
* * *
10559 ATAATAATT-TTTTATATATTTAATAATGA-
1 ATAAT-ATTATATTATATTTTTAAT-ATTAT
10588 ATAATATTAT-TTATATATTTTAATA
1 ATAATATTATATTATAT-TTTTAATA
10613 ATTTTTTAAT
Statistics
Matches: 114, Mismatches: 16, Indels: 27
0.73 0.10 0.17
Matches are distributed among these distances:
28 13 0.11
29 34 0.30
30 41 0.36
31 22 0.19
32 4 0.04
ACGTcount: A:0.44, C:0.01, G:0.01, T:0.54
Consensus pattern (29 bp):
ATAATATTATATTATATTTTTAATATTAT
Found at i:10556 original size:30 final size:29
Alignment explanation
Indices: 10512--10614 Score: 113
Period size: 30 Copynumber: 3.5 Consensus size: 29
10502 AAATAATCAA
*
10512 TTATATTATAATAATATTAGATATTATTTT
1 TTATATTTTAATAATATTA-ATATTATTTT
*
10542 TTTTATTTTAATAATATATAATA--ATTTT
1 TTATATTTTAATAATAT-TAATATTATTTT
*
10570 TTATATATTTAATAATGAATAATATTA-TTT
1 TTATAT-TTTAATAAT-ATTAATATTATTTT
*
10600 ATATATTTTAATAAT
1 TTATATTTTAATAAT
10615 TTTTTAATAA
Statistics
Matches: 63, Mismatches: 5, Indels: 11
0.80 0.06 0.14
Matches are distributed among these distances:
28 10 0.16
29 23 0.37
30 27 0.43
31 3 0.05
ACGTcount: A:0.42, C:0.00, G:0.02, T:0.56
Consensus pattern (29 bp):
TTATATTTTAATAATATTAATATTATTTT
Found at i:10582 original size:26 final size:29
Alignment explanation
Indices: 10469--10614 Score: 104
Period size: 29 Copynumber: 5.0 Consensus size: 29
10459 TAATATTTAT
*
10469 AATAATATTATATTATAT-TTTTAAT-ATT
1 AATAATATTAT-TTATATATTTTAATAATG
* * ** *
10497 ATATAAAATAATCAATTATATTATAATAAT-
1 A-ATAATATTATTTA-TATATTTTAATAATG
* * *
10527 ATTAGATATTATTTTTTTTATTTTAATAAT-
1 AATA-ATATTA-TTTATATATTTTAATAATG
*
10557 ATATAATAATTTTTTATATA-TTTAATAATG
1 A-ATAAT-ATTATTTATATATTTTAATAATG
10587 AATAATATTATTTATATATTTTAATAAT
1 AATAATATTATTTATATATTTTAATAAT
10615 TTTTTAATAA
Statistics
Matches: 90, Mismatches: 18, Indels: 19
0.71 0.14 0.15
Matches are distributed among these distances:
28 13 0.14
29 36 0.40
30 33 0.37
31 8 0.09
ACGTcount: A:0.45, C:0.01, G:0.01, T:0.53
Consensus pattern (29 bp):
AATAATATTATTTATATATTTTAATAATG
Found at i:10645 original size:23 final size:23
Alignment explanation
Indices: 10619--10663 Score: 72
Period size: 23 Copynumber: 2.0 Consensus size: 23
10609 AATAATTTTT
10619 TAATAAATATATTTAAAATATAC
1 TAATAAATATATTTAAAATATAC
* *
10642 TAATTAATATTTTTAAAATATA
1 TAATAAATATATTTAAAATATA
10664 ATATAACACT
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
23 20 1.00
ACGTcount: A:0.53, C:0.02, G:0.00, T:0.44
Consensus pattern (23 bp):
TAATAAATATATTTAAAATATAC
Found at i:10795 original size:27 final size:28
Alignment explanation
Indices: 10765--10832 Score: 81
Period size: 27 Copynumber: 2.5 Consensus size: 28
10755 ATTATAAAAA
10765 TAATATTTAATAATAAATAA-ATT-A-TTT
1 TAATATTTAA-AAT-AATAATATTAAGTTT
10792 TAATATTTTAAAATAATAATATTAAGTTT
1 TAATA-TTTAAAATAATAATATTAAGTTT
10821 T-ATATTTAAAAT
1 TAATATTTAAAAT
10833 TTGTAATAAA
Statistics
Matches: 37, Mismatches: 0, Indels: 8
0.82 0.00 0.18
Matches are distributed among these distances:
26 5 0.14
27 19 0.51
28 9 0.24
29 4 0.11
ACGTcount: A:0.50, C:0.00, G:0.01, T:0.49
Consensus pattern (28 bp):
TAATATTTAAAATAATAATATTAAGTTT
Found at i:13936 original size:31 final size:29
Alignment explanation
Indices: 13901--13980 Score: 88
Period size: 30 Copynumber: 2.7 Consensus size: 29
13891 AAAACTAAAA
*
13901 GTTTAGATACTAACACAAATCAAAACTGATT
1 GTTTAAATACTAA-ACAAATC-AAACTGATT
** *
13932 GTTTAAATACTAAAACGGATCAAATTGATT
1 GTTTAAATACT-AAACAAATCAAACTGATT
*
13962 GTTTAAATTCTAAACAAAT
1 GTTTAAATACTAAACAAAT
13981 AATTGTATAC
Statistics
Matches: 41, Mismatches: 7, Indels: 4
0.79 0.13 0.08
Matches are distributed among these distances:
29 6 0.15
30 18 0.44
31 15 0.37
32 2 0.05
ACGTcount: A:0.45, C:0.12, G:0.10, T:0.33
Consensus pattern (29 bp):
GTTTAAATACTAAACAAATCAAACTGATT
Found at i:15661 original size:78 final size:78
Alignment explanation
Indices: 15532--15688 Score: 298
Period size: 78 Copynumber: 2.0 Consensus size: 78
15522 CTGGGTTGGG
15532 AGGGTCACATTTATCTCTGTAATACATGATTCGGATTAGTCAATTAATTGATCAGATACTAGTAA
1 AGGGTCACATTTATCTCTGTAATACATGATTCGGATTAGTCAATTAATTGATCAGATACTAGTAA
15597 TTATATAAAAGAA
66 TTATATAAAAGAA
15610 AGGGTCACATTTATCTCTGTAATATC-TGATTCGGATTAGTCAATTAATTGATCAGATACTAGTA
1 AGGGTCACATTTATCTCTGTAATA-CATGATTCGGATTAGTCAATTAATTGATCAGATACTAGTA
15674 ATTATATAAAAGAA
65 ATTATATAAAAGAA
15688 A
1 A
15689 ATGATCTTTT
Statistics
Matches: 78, Mismatches: 0, Indels: 2
0.98 0.00 0.03
Matches are distributed among these distances:
78 77 0.99
79 1 0.01
ACGTcount: A:0.38, C:0.11, G:0.15, T:0.35
Consensus pattern (78 bp):
AGGGTCACATTTATCTCTGTAATACATGATTCGGATTAGTCAATTAATTGATCAGATACTAGTAA
TTATATAAAAGAA
Found at i:18062 original size:35 final size:35
Alignment explanation
Indices: 18016--18127 Score: 143
Period size: 35 Copynumber: 3.2 Consensus size: 35
18006 AAAATAGTCC
* *
18016 TCAATTTCATTCTAAACCCCAATTTCCAAAGTAAT
1 TCAATTTCATTCTAAACCCCAAATTCCAAAATAAT
**
18051 TCAATTTCATTCTAAACCTTAAATTCCAAAATAAT
1 TCAATTTCATTCTAAACCCCAAATTCCAAAATAAT
** * * *
18086 TCAATTAAATTTTAAACCCCAAATTCTAAAATACT
1 TCAATTTCATTCTAAACCCCAAATTCCAAAATAAT
18121 TCAATTT
1 TCAATTT
18128 AAGGTTTAGA
Statistics
Matches: 65, Mismatches: 12, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
35 65 1.00
ACGTcount: A:0.41, C:0.21, G:0.01, T:0.37
Consensus pattern (35 bp):
TCAATTTCATTCTAAACCCCAAATTCCAAAATAAT
Found at i:18197 original size:35 final size:35
Alignment explanation
Indices: 18123--18197 Score: 80
Period size: 35 Copynumber: 2.1 Consensus size: 35
18113 AAAATACTTC
* * **
18123 AATTTAAGGTTTAGAATGTAATTGAATTATTTTGG
1 AATTTAAGGTTTAGAATGAAATTGAAGTATTTTAA
* *
18158 AATTTAGGGTTTAGAATGAAATT-AAGGTGTTTTAA
1 AATTTAAGGTTTAGAATGAAATTGAA-GTATTTTAA
18193 AATTT
1 AATTT
18198 TGAACATGAA
Statistics
Matches: 33, Mismatches: 6, Indels: 2
0.80 0.15 0.05
Matches are distributed among these distances:
34 2 0.06
35 31 0.94
ACGTcount: A:0.36, C:0.00, G:0.20, T:0.44
Consensus pattern (35 bp):
AATTTAAGGTTTAGAATGAAATTGAAGTATTTTAA
Found at i:22513 original size:11 final size:11
Alignment explanation
Indices: 22480--22507 Score: 56
Period size: 11 Copynumber: 2.5 Consensus size: 11
22470 TAATTTCTAA
22480 TTAAATATATT
1 TTAAATATATT
22491 TTAAATATATT
1 TTAAATATATT
22502 TTAAAT
1 TTAAAT
22508 TCATTTAATT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 17 1.00
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (11 bp):
TTAAATATATT
Found at i:24710 original size:14 final size:14
Alignment explanation
Indices: 24693--24722 Score: 60
Period size: 14 Copynumber: 2.1 Consensus size: 14
24683 TGAATGAATG
24693 CTCCAAAATGATTT
1 CTCCAAAATGATTT
24707 CTCCAAAATGATTT
1 CTCCAAAATGATTT
24721 CT
1 CT
24723 AAGAATGATA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.33, C:0.23, G:0.07, T:0.37
Consensus pattern (14 bp):
CTCCAAAATGATTT
Found at i:25126 original size:20 final size:20
Alignment explanation
Indices: 25101--25170 Score: 104
Period size: 20 Copynumber: 3.5 Consensus size: 20
25091 GCTATGATCA
25101 TGAAAGTAAAACTACGAGTC
1 TGAAAGTAAAACTACGAGTC
*
25121 TGAAAGTAAAACTATGAGTC
1 TGAAAGTAAAACTACGAGTC
* * *
25141 TGAAAGTAAAGCTACAAATC
1 TGAAAGTAAAACTACGAGTC
25161 TGAAAGTAAA
1 TGAAAGTAAA
25171 TTATGAGTTT
Statistics
Matches: 45, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 45 1.00
ACGTcount: A:0.49, C:0.11, G:0.19, T:0.21
Consensus pattern (20 bp):
TGAAAGTAAAACTACGAGTC
Found at i:25147 original size:40 final size:40
Alignment explanation
Indices: 25092--25178 Score: 115
Period size: 40 Copynumber: 2.2 Consensus size: 40
25082 ATGCATTGGG
* *
25092 CTATGA-TCATGAAAGTAAAACTACGAGTCTGAAAGTAAAA
1 CTATGAGTCATGAAAGTAAAACTACAAATCTGAAAGT-AAA
*
25132 CTATGAGTC-TGAAAGTAAAGCTACAAATCTGAAAGTAAA
1 CTATGAGTCATGAAAGTAAAACTACAAATCTGAAAGTAAA
*
25171 TTATGAGT
1 CTATGAGT
25179 TTGGAAATCA
Statistics
Matches: 42, Mismatches: 4, Indels: 3
0.86 0.08 0.06
Matches are distributed among these distances:
39 10 0.24
40 30 0.71
41 2 0.05
ACGTcount: A:0.45, C:0.11, G:0.18, T:0.25
Consensus pattern (40 bp):
CTATGAGTCATGAAAGTAAAACTACAAATCTGAAAGTAAA
Found at i:36094 original size:2 final size:2
Alignment explanation
Indices: 36077--36128 Score: 79
Period size: 2 Copynumber: 26.5 Consensus size: 2
36067 CAGATTAATT
* *
36077 TA TA TT TA TG TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
36119 TA TA TA -A TA T
1 TA TA TA TA TA T
36129 TTTAAGAATT
Statistics
Matches: 45, Mismatches: 4, Indels: 2
0.88 0.08 0.04
Matches are distributed among these distances:
1 1 0.02
2 44 0.98
ACGTcount: A:0.46, C:0.00, G:0.02, T:0.52
Consensus pattern (2 bp):
TA
Found at i:36175 original size:21 final size:21
Alignment explanation
Indices: 36144--36185 Score: 68
Period size: 21 Copynumber: 2.0 Consensus size: 21
36134 GAATTTTTAT
36144 TTTATATTATTAAAATATATTA
1 TTTATATTATTAAAA-ATATTA
36166 TTTA-ATTATTAAAAATATTA
1 TTTATATTATTAAAAATATTA
36186 ACATATTATA
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
20 6 0.30
21 10 0.50
22 4 0.20
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (21 bp):
TTTATATTATTAAAAATATTA
Found at i:36211 original size:41 final size:40
Alignment explanation
Indices: 36147--36276 Score: 113
Period size: 41 Copynumber: 3.1 Consensus size: 40
36137 TTTTTATTTT
36147 ATATTATTAAAATATATTA-TTTAATTATTAAAAATATTAA
1 ATATTA-TAAAATATATTATTTTAATTATTAAAAATATTAA
* * * *
36187 CATATTATAAAATAAATTATTTTAACCGTT-TGAAATATAATAA
1 -ATATTATAAAATATATTATTTTAA---TTATTAAAAATATTAA
* *
36230 ATAATTAT-AAATATATTATTTTAATTATTTTAAAATATCAA
1 AT-ATTATAAAATATATTATTTTAATTA-TTAAAAATATTAA
36271 TATATT
1 -ATATT
36277 TAGATTGAGT
Statistics
Matches: 71, Mismatches: 10, Indels: 16
0.73 0.10 0.16
Matches are distributed among these distances:
39 2 0.03
40 11 0.15
41 22 0.31
42 19 0.27
43 15 0.21
44 2 0.03
ACGTcount: A:0.49, C:0.03, G:0.02, T:0.46
Consensus pattern (40 bp):
ATATTATAAAATATATTATTTTAATTATTAAAAATATTAA
Found at i:36256 original size:20 final size:21
Alignment explanation
Indices: 36140--36257 Score: 68
Period size: 20 Copynumber: 5.6 Consensus size: 21
36130 TTAAGAATTT
36140 TTATTTTATATTATTAAAATATA
1 TTATTTTA-ATTA-TAAAATATA
36163 TTA-TTTAATTATTAAAA-ATA
1 TTATTTTAATTA-TAAAATATA
*** *
36183 TTAACAT-ATTATAAAATAAA
1 TTATTTTAATTATAAAATATA
*
36203 TTATTTTAACCGTT-TGAAATATA
1 TTATTTTAA---TTATAAAATATA
* **
36226 ATA-AATAATTAT-AAATATA
1 TTATTTTAATTATAAAATATA
36245 TTATTTTAATTAT
1 TTATTTTAATTAT
36258 TTTAAAATAT
Statistics
Matches: 73, Mismatches: 14, Indels: 19
0.69 0.13 0.18
Matches are distributed among these distances:
19 16 0.22
20 24 0.33
21 12 0.16
22 7 0.10
23 12 0.16
24 2 0.03
ACGTcount: A:0.47, C:0.03, G:0.02, T:0.48
Consensus pattern (21 bp):
TTATTTTAATTATAAAATATA
Found at i:36266 original size:43 final size:42
Alignment explanation
Indices: 36151--36272 Score: 119
Period size: 42 Copynumber: 2.9 Consensus size: 42
36141 TATTTTATAT
*
36151 TATTA-AAATATATTA-TTTAATTA-TTAAAA-ATATTAACA
1 TATTATAAATATATTATTTTAATTATTTAAAATATAATAACA
* *** *
36189 TATTATAAAATAAATTATTTTAACCGTTTGAAATATAATAA-A
1 TATTAT-AAATATATTATTTTAATTATTTAAAATATAATAACA
36231 TAATTATAAATATATTATTTTAATTATTTTAAAATATCAATA
1 T-ATTATAAATATATTATTTTAATTA-TTTAAAATAT-AATA
36273 TATTTAGATT
Statistics
Matches: 65, Mismatches: 11, Indels: 10
0.76 0.13 0.12
Matches are distributed among these distances:
38 5 0.08
40 9 0.14
41 5 0.08
42 22 0.34
43 20 0.31
44 4 0.06
ACGTcount: A:0.50, C:0.03, G:0.02, T:0.45
Consensus pattern (42 bp):
TATTATAAATATATTATTTTAATTATTTAAAATATAATAACA
Found at i:36690 original size:17 final size:17
Alignment explanation
Indices: 36668--36701 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
36658 TTTTGAGCTT
* *
36668 GATTCAAGCTCGAACTC
1 GATTCAAACTCAAACTC
36685 GATTCAAACTCAAACTC
1 GATTCAAACTCAAACTC
36702 AAACTCAAAT
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.35, C:0.29, G:0.12, T:0.24
Consensus pattern (17 bp):
GATTCAAACTCAAACTC
Found at i:38721 original size:22 final size:22
Alignment explanation
Indices: 38680--38722 Score: 61
Period size: 22 Copynumber: 2.0 Consensus size: 22
38670 TATTTTTATT
*
38680 AAAAAATAGTGATTTAATTGAA
1 AAAAAATAGTGATATAATTGAA
38702 AAAAAATAGT-ATATAGATTGA
1 AAAAAATAGTGATATA-ATTGA
38723 TATTATTATA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
21 4 0.21
22 15 0.79
ACGTcount: A:0.56, C:0.00, G:0.14, T:0.30
Consensus pattern (22 bp):
AAAAAATAGTGATATAATTGAA
Found at i:41729 original size:33 final size:32
Alignment explanation
Indices: 41670--41733 Score: 78
Period size: 33 Copynumber: 2.0 Consensus size: 32
41660 AGGGTCGTGC
41670 CTCGAATATTTTAATTTAATAGAAATTTAGATT
1 CTCGAATATTTTAATTTAATAGAAA-TTAGATT
*
41703 CTCGAA-ATTTTAAATATTAA-ATAAATTAGAT
1 CTCGAATATTTT-AAT-TTAATAGAAATTAGAT
41734 CTTATTCATC
Statistics
Matches: 28, Mismatches: 1, Indels: 5
0.82 0.03 0.15
Matches are distributed among these distances:
32 11 0.39
33 13 0.46
34 4 0.14
ACGTcount: A:0.44, C:0.06, G:0.08, T:0.42
Consensus pattern (32 bp):
CTCGAATATTTTAATTTAATAGAAATTAGATT
Done.