Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01005483.1 Hibiscus syriacus cultivar Beakdansim tig00012575_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  106186

Tables:   1   

This is table  1  of  1  ( 51 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2250--2310
20
2.9
21
79
13
63
49
27
0
22
1.50
3731--3770
21
2.0
21
85
5
55
42
2
7
47
1.45
3886--3932
20
2.3
20
85
0
58
40
12
8
38
1.74
3977--4029
24
2.1
27
82
10
67
49
5
0
45
1.26
4169--4217
14
3.2
15
83
13
64
61
0
0
38
0.96
4176--4234
17
3.6
17
82
8
70
55
0
0
44
0.99
4171--4234
31
2.1
31
82
11
78
56
0
0
43
0.99
4257--4292
9
3.6
10
88
11
56
58
0
0
41
0.98
4164--4292
11
13.5
10
65
20
62
53
0
1
44
1.09
4441--4501
30
2.0
30
87
0
86
47
14
3
34
1.61
6920--6954
13
2.8
13
95
4
63
62
22
0
14
1.31
11520--11634
60
1.9
60
83
3
151
31
23
2
42
1.68
11824--11953
60
2.2
61
79
9
142
42
3
19
35
1.67
12104--12140
2
18.5
2
100
0
74
51
0
0
48
1.00
21816--21939
60
2.1
60
83
3
151
33
17
12
35
1.88
23472--23574
29
3.5
29
67
15
84
40
1
5
51
1.37
23451--23576
60
2.1
60
100
0
252
39
1
7
51
1.39
23451--23620
60
2.8
60
88
3
191
37
3
10
48
1.54
34953--35006
27
2.0
27
81
0
63
20
14
48
16
1.81
47188--47233
14
3.3
14
90
0
74
8
13
26
52
1.69
47979--48053
10
7.7
10
67
21
52
9
13
21
56
1.65
47985--48049
16
4.1
16
93
0
112
7
13
23
55
1.64
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
48119--48151
16
2.1
16
100
0
66
6
12
24
57
1.57
48237--48629
136
2.9
136
90
1
612
30
24
17
27
1.97
51921--51956
2
18.0
2
100
0
72
50
0
0
50
1.00
52584--52633
26
1.9
26
88
8
75
72
4
6
18
1.22
54302--54326
2
12.5
2
100
0
50
48
0
0
52
1.00
64805--64870
14
4.9
13
76
18
57
71
1
1
25
1.04
64805--64876
27
2.6
28
82
10
87
70
2
1
25
1.08
65129--65167
15
2.7
14
84
4
51
25
0
23
51
1.49
66472--66814
38
9.4
36
73
15
201
41
3
7
46
1.51
66472--66745
38
7.5
36
79
12
240
42
4
7
45
1.51
66462--66745
74
3.9
72
79
13
248
42
4
7
45
1.52
68107--68179
26
2.8
24
73
17
58
23
5
0
71
1.07
71743--71767
2
12.5
2
100
0
50
48
0
0
52
1.00
73589--73623
17
2.1
17
94
0
61
34
22
8
34
1.85
78691--78740
14
3.8
13
86
5
57
30
0
22
48
1.51
78697--78740
14
3.2
14
87
3
63
29
0
22
47
1.51
78723--78767
21
2.1
21
83
0
54
28
2
17
51
1.58
84165--84232
2
34.0
2
100
0
136
50
0
0
50
1.00
84296--84333
14
2.8
13
84
15
51
68
0
0
31
0.90
84286--84336
20
2.8
17
83
13
66
68
1
0
29
1.00
85661--85803
55
2.6
53
86
6
205
28
18
24
28
1.98
86351--86459
23
4.9
23
82
10
120
19
24
25
30
1.98
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
86329--86459
43
3.0
43
75
14
133
19
22
25
32
1.97
87312--87358
17
2.7
17
78
12
51
42
0
0
57
0.98
87369--87429
22
2.7
23
82
5
70
57
8
3
31
1.44
87625--87651
4
6.8
4
100
0
54
22
0
0
77
0.76
98149--98207
2
29.5
2
100
0
118
50
0
0
49
1.00
101516--101584
19
3.6
19
88
0
93
40
8
13
37
1.75
101670--101710
20
2.0
21
90
4
66
24
21
26
26
2.00

Tables:   1

The End!