Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01005484.1 Hibiscus syriacus cultivar Beakdansim tig00012591_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 72872
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Found at i:783 original size:18 final size:16
Alignment explanation
Indices: 760--801 Score: 52
Period size: 14 Copynumber: 2.6 Consensus size: 16
750 CTGATCCCAA
760 ATCTCAACAAACTATCAT
1 ATCTCAAC-AAC-ATCAT
778 ATCTCAAC--CATCAT
1 ATCTCAACAACATCAT
792 ATCTCAACAA
1 ATCTCAACAA
802 TCATATTAAT
Statistics
Matches: 22, Mismatches: 0, Indels: 6
0.79 0.00 0.21
Matches are distributed among these distances:
14 13 0.59
15 1 0.05
18 8 0.36
ACGTcount: A:0.43, C:0.31, G:0.00, T:0.26
Consensus pattern (16 bp):
ATCTCAACAACATCAT
Found at i:792 original size:14 final size:14
Alignment explanation
Indices: 773--807 Score: 61
Period size: 14 Copynumber: 2.5 Consensus size: 14
763 TCAACAAACT
*
773 ATCATATCTCAACC
1 ATCATATCTCAACA
787 ATCATATCTCAACA
1 ATCATATCTCAACA
801 ATCATAT
1 ATCATAT
808 TAATGTCCAA
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
14 20 1.00
ACGTcount: A:0.40, C:0.29, G:0.00, T:0.31
Consensus pattern (14 bp):
ATCATATCTCAACA
Found at i:9184 original size:525 final size:525
Alignment explanation
Indices: 8187--9762 Score: 2938
Period size: 525 Copynumber: 3.0 Consensus size: 525
8177 TATTTTGAAC
*
8187 GGTACATTAAAATGAAACAAAAACTAAATTTTAGGGACATCATTTTAAAAAGATTTAAGCGTCAT
1 GGTACACTAAAATGAAACAAAAACTAAATTTTAGGGACATCATTTTAAAAAGATTTAAGCGTCAT
* *
8252 ATTTTTTCCTATAGTACACTCAATTTATTATTTCCGTCTCTATCATATTCTCACGTCAATTTAGT
66 ATTTTTTCCTGTAGTACACTCAATTTATTATTTCCGTCTCTATCATATTCTCAAGTCAATTTAGT
*
8317 TCTCAAAGTTGTTTAATTGCATCATTCTTTGCCATACCTCTAACTTAAAATCTTAAATGTTAAAC
131 TCTCAAAGTTGTTTAATTGCATCATTCTTTGCCATACCTCTAACTTAAAATCTTAAATGCTAAAC
8382 CCTAAATTATAACCCATAACACCTAAACCCTAAATGTTAAACTCTAAATTAATACTCTAAACAAT
196 CCTAAATTATAACCCATAACACCTAAACCCTAAATGTTAAACTCTAAATTAATACTCTAAACAAT
8447 AGTAAATATTTTAAATATCGATGCAATTGAGCAATTTCGAGAACTAAATTGATATGAAAAATCAA
261 AGTAAATATTTTAAATATCGATGCAATTGAGCAATTTCGAGAACTAAATTGATATGAAAAATCAA
*
8512 TATGGACGAAGATGAAAATTAGGGACTGCTATAGGTACAAAAGTTACTTTTTTACCTTTTAAAAA
326 TATGGACGAAGATGAAAAATAGGGACTGCTATAGGTACAAAAGTTACTTTTTTACCTTTTAAAAA
8577 ATAGCGCATAACCTTCACTTCTTTTAGTACGGGCCGTTTCAACTTAGTTCAAGAATTTTCTTAGG
391 ATAGCGCATAACCTTCACTTCTTTTAGTACGGGCCGTTTCAACTTAGTTCAAGAATTTTCTTAGG
8642 GTTTCGAAATTCGGGTCATAAAACTCTATCATAAACTCCCTACACCTTTGCTTCATCCTTTCAAA
456 GTTTCGAAATTCGGGTCATAAAACTCTATCATAAACTCCCTACACCTTTGCTTCATCCTTTCAAA
8707 AGTTT
521 AGTTT
*
8712 GGTACACTAAAATGAAACAAAAACTAAATTTTAGGGACATCATTTTAAAAAGATTTAAGCGACAT
1 GGTACACTAAAATGAAACAAAAACTAAATTTTAGGGACATCATTTTAAAAAGATTTAAGCGTCAT
8777 ATTTTTTCCTGTAGTACACTCAATTTATTATTTCCGTCTCTATCATATTCTCAAGTCAATTTAGT
66 ATTTTTTCCTGTAGTACACTCAATTTATTATTTCCGTCTCTATCATATTCTCAAGTCAATTTAGT
8842 TCTCAAAGTTGTTTAATTGCATCATTCTTTGCCATACCTCTAACTTAAAATCTTAAATGCTAAAC
131 TCTCAAAGTTGTTTAATTGCATCATTCTTTGCCATACCTCTAACTTAAAATCTTAAATGCTAAAC
8907 CCTAAATTATAACCCATAACACCTAAACCCTAAATGTTAAACTCTAAATTAATACTCTAAACAAT
196 CCTAAATTATAACCCATAACACCTAAACCCTAAATGTTAAACTCTAAATTAATACTCTAAACAAT
*
8972 AGTAAATATTTTAAATATCGATGCAATTGAGCAATTTCAAGAACTAAATTGATATGAAAAATCAA
261 AGTAAATATTTTAAATATCGATGCAATTGAGCAATTTCGAGAACTAAATTGATATGAAAAATCAA
9037 TATGGACGAAGATGAAAAATAGGGACTGCTATAGGTACAAAAGTTACTTTTTTACCTTTTAAAAA
326 TATGGACGAAGATGAAAAATAGGGACTGCTATAGGTACAAAAGTTACTTTTTTACCTTTTAAAAA
9102 ATAGCGCATAACCTTCACTTCTTTTAGTACGGGCCGTTTCAACTTAGTTCAAGAATTTTCTTAGG
391 ATAGCGCATAACCTTCACTTCTTTTAGTACGGGCCGTTTCAACTTAGTTCAAGAATTTTCTTAGG
9167 GTTTCGAAATTCGGGTCATAAAACTCTATCATAAACTCCCTACACCTTTGCTTCATCCTTTCAAA
456 GTTTCGAAATTCGGGTCATAAAACTCTATCATAAACTCCCTACACCTTTGCTTCATCCTTTCAAA
9232 AGTTT
521 AGTTT
*
9237 GGTACACTAAAATGAAACAAAAACTAAATTTTAGGGATATCATTTTAAAAAGATTTAAGCGTCAT
1 GGTACACTAAAATGAAACAAAAACTAAATTTTAGGGACATCATTTTAAAAAGATTTAAGCGTCAT
9302 ATTTTTTCCTGTAGTACACTCAATTTATTATTTCCGTCTCTATCATATTCTCACA-TCAATTTAG
66 ATTTTTTCCTGTAGTACACTCAATTTATTATTTCCGTCTCTATCATATTCTCA-AGTCAATTTAG
* * * *
9366 TTTTCAAAGTTGTTTAATTGCATCATTCTTTGTCATACCTCTAACTTAAAACCTTAAATGCAAAA
130 TTCTCAAAGTTGTTTAATTGCATCATTCTTTGCCATACCTCTAACTTAAAATCTTAAATGCTAAA
** * *
9431 CCCTAAATTATAACCCATAACACCTAAACTTTAAACGTTAAACTCTAAATTAATACTCTAAACAG
195 CCCTAAATTATAACCCATAACACCTAAACCCTAAATGTTAAACTCTAAATTAATACTCTAAACAA
* * * *
9496 TAATAAATATTTTAAATATCTATGTAATTGAGTAATTTCGAGAACTAAATTGATATGAAAAATCA
260 TAGTAAATATTTTAAATATCGATGCAATTGAGCAATTTCGAGAACTAAATTGATATGAAAAATCA
*
9561 ATATGGACGAAGATGAAAAATATGGACTGCTATAGGTACAAAAGTTACTTTTTTACCTTTTAAAA
325 ATATGGACGAAGATGAAAAATAGGGACTGCTATAGGTACAAAAGTTACTTTTTTACCTTTTAAAA
9626 AATAGCGCATAACCTTCACTTCTTTTAGTACGGGCCGTTTCAACTTAGTTCAAGAATTTTCTTAG
390 AATAGCGCATAACCTTCACTTCTTTTAGTACGGGCCGTTTCAACTTAGTTCAAGAATTTTCTTAG
9691 GGTTTCGAAATTCGGGTCATAAAACTCTATCATAAACTCCCTACACCTTTGCTTCATCCTTTCAA
455 GGTTTCGAAATTCGGGTCATAAAACTCTATCATAAACTCCCTACACCTTTGCTTCATCCTTTCAA
*
9756 AACTTT
520 AAGTTT
9762 G
1 G
9763 CACGGTTTGA
Statistics
Matches: 1026, Mismatches: 24, Indels: 2
0.98 0.02 0.00
Matches are distributed among these distances:
525 1025 1.00
526 1 0.00
ACGTcount: A:0.36, C:0.18, G:0.11, T:0.35
Consensus pattern (525 bp):
GGTACACTAAAATGAAACAAAAACTAAATTTTAGGGACATCATTTTAAAAAGATTTAAGCGTCAT
ATTTTTTCCTGTAGTACACTCAATTTATTATTTCCGTCTCTATCATATTCTCAAGTCAATTTAGT
TCTCAAAGTTGTTTAATTGCATCATTCTTTGCCATACCTCTAACTTAAAATCTTAAATGCTAAAC
CCTAAATTATAACCCATAACACCTAAACCCTAAATGTTAAACTCTAAATTAATACTCTAAACAAT
AGTAAATATTTTAAATATCGATGCAATTGAGCAATTTCGAGAACTAAATTGATATGAAAAATCAA
TATGGACGAAGATGAAAAATAGGGACTGCTATAGGTACAAAAGTTACTTTTTTACCTTTTAAAAA
ATAGCGCATAACCTTCACTTCTTTTAGTACGGGCCGTTTCAACTTAGTTCAAGAATTTTCTTAGG
GTTTCGAAATTCGGGTCATAAAACTCTATCATAAACTCCCTACACCTTTGCTTCATCCTTTCAAA
AGTTT
Found at i:12197 original size:20 final size:20
Alignment explanation
Indices: 12165--12213 Score: 55
Period size: 21 Copynumber: 2.4 Consensus size: 20
12155 TTTAAATAAA
*
12165 TTTTAACATAAAAT-ATATAT
1 TTTTAA-ATAAAATAAAATAT
12185 TTTTAAATAAAAATAAAATAT
1 TTTTAAAT-AAAATAAAATAT
*
12206 TTTAAAAT
1 TTTTAAAT
12214 TAAGTTAATA
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
19 2 0.08
20 11 0.44
21 12 0.48
ACGTcount: A:0.55, C:0.02, G:0.00, T:0.43
Consensus pattern (20 bp):
TTTTAAATAAAATAAAATAT
Found at i:12230 original size:27 final size:24
Alignment explanation
Indices: 12196--12271 Score: 75
Period size: 25 Copynumber: 3.0 Consensus size: 24
12186 TTTAAATAAA
12196 AATAAAATATTTTAAAATTAAGTTAAT
1 AATAAAATATTTT--AA-TAAGTTAAT
*
12223 AATAAAATGTATTTAATAAGTTAAT
1 AATAAAATAT-TTTAATAAGTTAAT
*
12248 ATAAAAAATATTTT--TAAGTTAAT
1 A-ATAAAATATTTTAATAAGTTAAT
12271 A
1 A
12272 TATATAAAAT
Statistics
Matches: 44, Mismatches: 3, Indels: 8
0.80 0.05 0.15
Matches are distributed among these distances:
23 10 0.23
25 13 0.30
26 9 0.20
27 9 0.20
28 3 0.07
ACGTcount: A:0.54, C:0.00, G:0.05, T:0.41
Consensus pattern (24 bp):
AATAAAATATTTTAATAAGTTAAT
Found at i:12269 original size:23 final size:24
Alignment explanation
Indices: 12212--12284 Score: 85
Period size: 25 Copynumber: 3.0 Consensus size: 24
12202 ATATTTTAAA
**
12212 ATTAAGTTAATAATAAAATGTATTT
1 ATTAAGTTAAT-ATAAAAAATATTT
*
12237 AATAAGTTAATATAAAAAATATTT
1 ATTAAGTTAATATAAAAAATATTT
12261 -TTAAGTTAATATATATAAAATATT
1 ATTAAGTTAATATA-A-AAAATATT
12285 ATGAATTTGA
Statistics
Matches: 42, Mismatches: 4, Indels: 4
0.84 0.08 0.08
Matches are distributed among these distances:
23 12 0.29
24 12 0.29
25 18 0.43
ACGTcount: A:0.52, C:0.00, G:0.05, T:0.42
Consensus pattern (24 bp):
ATTAAGTTAATATAAAAAATATTT
Found at i:15541 original size:20 final size:20
Alignment explanation
Indices: 15516--15557 Score: 84
Period size: 20 Copynumber: 2.1 Consensus size: 20
15506 TTTGTTCTGT
15516 TGCATTGAATATTCTGTGAA
1 TGCATTGAATATTCTGTGAA
15536 TGCATTGAATATTCTGTGAA
1 TGCATTGAATATTCTGTGAA
15556 TG
1 TG
15558 TTTGTCTGTC
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.29, C:0.10, G:0.21, T:0.40
Consensus pattern (20 bp):
TGCATTGAATATTCTGTGAA
Found at i:18618 original size:22 final size:22
Alignment explanation
Indices: 18593--18636 Score: 54
Period size: 22 Copynumber: 2.0 Consensus size: 22
18583 TATTAAATAT
18593 TTAATATT-TTCGTCTAATTTGA
1 TTAATATTGTTCGT-TAATTTGA
* *
18615 TTAATTTTGTTTGTTAATTTGA
1 TTAATATTGTTCGTTAATTTGA
18637 ATTCTATTAC
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
22 15 0.79
23 4 0.21
ACGTcount: A:0.25, C:0.05, G:0.11, T:0.59
Consensus pattern (22 bp):
TTAATATTGTTCGTTAATTTGA
Found at i:19683 original size:21 final size:20
Alignment explanation
Indices: 19649--19691 Score: 52
Period size: 21 Copynumber: 2.1 Consensus size: 20
19639 TCTACTAAGT
19649 ATAAAATAAGATTTAATTAAA
1 ATAAAATAAGATTT-ATTAAA
*
19670 ATAATAATAA-ATTTTTTAAA
1 ATAA-AATAAGATTTATTAAA
19690 AT
1 AT
19692 CATCCCCATA
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
20 7 0.35
21 8 0.40
22 5 0.25
ACGTcount: A:0.58, C:0.00, G:0.02, T:0.40
Consensus pattern (20 bp):
ATAAAATAAGATTTATTAAA
Found at i:23221 original size:31 final size:31
Alignment explanation
Indices: 23147--23223 Score: 93
Period size: 31 Copynumber: 2.5 Consensus size: 31
23137 AAACTACGTA
* *
23147 TTTAGTACCTAAATTATTAGTTTTATTACGC
1 TTTAGTACCTAAACTATTAGTTTTATTACAC
* * *
23178 TTAAGTATCTAAACTATTAGTTTTATT-CTAT
1 TTTAGTACCTAAACTATTAGTTTTATTAC-AC
23209 TTTAGTACCTAAACT
1 TTTAGTACCTAAACT
23224 TTCAATATTT
Statistics
Matches: 38, Mismatches: 7, Indels: 2
0.81 0.15 0.04
Matches are distributed among these distances:
30 1 0.03
31 37 0.97
ACGTcount: A:0.31, C:0.13, G:0.08, T:0.48
Consensus pattern (31 bp):
TTTAGTACCTAAACTATTAGTTTTATTACAC
Found at i:25667 original size:21 final size:21
Alignment explanation
Indices: 25641--25685 Score: 65
Period size: 21 Copynumber: 2.1 Consensus size: 21
25631 AAATTACGCA
*
25641 TTTAATATCTAAA-TTATTAAT
1 TTTAATACCTAAACTT-TTAAT
25662 TTTAATACCTAAACTTTTAAT
1 TTTAATACCTAAACTTTTAAT
25683 TTT
1 TTT
25686 TATAAAATCA
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
21 20 0.91
22 2 0.09
ACGTcount: A:0.38, C:0.09, G:0.00, T:0.53
Consensus pattern (21 bp):
TTTAATACCTAAACTTTTAAT
Found at i:30674 original size:19 final size:20
Alignment explanation
Indices: 30645--30682 Score: 60
Period size: 19 Copynumber: 1.9 Consensus size: 20
30635 AGAAATTTGT
*
30645 TGAAGGTGCATCGATGCATA
1 TGAAGGTGCATCAATGCATA
30665 TGAA-GTGCATCAATGCAT
1 TGAAGGTGCATCAATGCAT
30683 TAATTTTAAT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
19 13 0.76
20 4 0.24
ACGTcount: A:0.32, C:0.16, G:0.26, T:0.26
Consensus pattern (20 bp):
TGAAGGTGCATCAATGCATA
Found at i:30725 original size:63 final size:62
Alignment explanation
Indices: 30650--30808 Score: 183
Period size: 63 Copynumber: 2.5 Consensus size: 62
30640 TTTGTTGAAG
* * ** * * * *
30650 GTGCATCGATGCATATGAAGTGCATCAATGCATTAATTTTAATACAAACATTGAATGTCGTCA
1 GTGCATCGATGCATA-GGAGTGCATCGATGCATTAATAATAAAACAAACATCGAATGCCCTCA
** **
30713 GTGCATCGATGCATAAGGAGTGCATCGATGCATTTCTAATAAAATGAACATCGAATGCCCTCA
1 GTGCATCGATGCAT-AGGAGTGCATCGATGCATTAATAATAAAACAAACATCGAATGCCCTCA
30776 GTGCATCGATGCATCAGGAGTGCATCGATGCAT
1 GTGCATCGATGCAT-AGGAGTGCATCGATGCAT
30809 GCCTCCATTA
Statistics
Matches: 82, Mismatches: 13, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
63 81 0.99
64 1 0.01
ACGTcount: A:0.32, C:0.19, G:0.21, T:0.28
Consensus pattern (62 bp):
GTGCATCGATGCATAGGAGTGCATCGATGCATTAATAATAAAACAAACATCGAATGCCCTCA
Found at i:32376 original size:149 final size:148
Alignment explanation
Indices: 32185--32499 Score: 549
Period size: 149 Copynumber: 2.1 Consensus size: 148
32175 GAGTCGAGGG
* * * *
32185 TCTACGCGGTTCTTCGGGACATATGTATATTCTTTGGAACATGTGTGAAGTCTTGAAAGATACAT
1 TCTACGCGG-TCTTCGGGACATATATATATTATGTGGAACATGTGTGAAGTCTTGAAAGACACAT
32250 ACTTGATCCCTAGTATATGTATATGATTCTTAAGGAATAATATGTGGTCCTTATGGACATTATTA
65 ACTTGATCCCTAGTATATGTATATGATTCTTAAGGAATAATATGTGGTCCTTATGGACATTATTA
32315 TATAGCACTACGGTGCAAT
130 TATAGCACTACGGTGCAAT
*
32334 TCTACGCGGTCATTCGGGATATATATATATTATGTGGAACATGTGTGAAGTCTTGAAAGACACAT
1 TCTACGCGGTC-TTCGGGACATATATATATTATGTGGAACATGTGTGAAGTCTTGAAAGACACAT
32399 ACTTGATCCCTAGTATATGTATATGATTCTTAAGGAATAATATGTGGTCCTTATGGACATTATTA
65 ACTTGATCCCTAGTATATGTATATGATTCTTAAGGAATAATATGTGGTCCTTATGGACATTATTA
*
32464 TATGGCACTACGGTGCAAT
130 TATAGCACTACGGTGCAAT
32483 TCTACGCGGTACTTCGG
1 TCTACGCGGT-CTTCGG
32500 TGCAATTATA
Statistics
Matches: 158, Mismatches: 6, Indels: 4
0.94 0.04 0.02
Matches are distributed among these distances:
148 2 0.01
149 155 0.98
150 1 0.01
ACGTcount: A:0.29, C:0.15, G:0.21, T:0.35
Consensus pattern (148 bp):
TCTACGCGGTCTTCGGGACATATATATATTATGTGGAACATGTGTGAAGTCTTGAAAGACACATA
CTTGATCCCTAGTATATGTATATGATTCTTAAGGAATAATATGTGGTCCTTATGGACATTATTAT
ATAGCACTACGGTGCAAT
Found at i:36100 original size:20 final size:21
Alignment explanation
Indices: 36052--36111 Score: 70
Period size: 20 Copynumber: 3.0 Consensus size: 21
36042 AACTCAGTTT
*
36052 TCAA-ATTCGCAACGCGAATA
1 TCAAGATTCGCAACGCGATTA
* *
36072 TCCAGATTCGCAACGCGATTG
1 TCAAGATTCGCAACGCGATTA
*
36093 T-AAGATTCGCAACACGATT
1 TCAAGATTCGCAACGCGATT
36112 TTGAAAAATG
Statistics
Matches: 34, Mismatches: 5, Indels: 2
0.83 0.12 0.05
Matches are distributed among these distances:
20 19 0.56
21 15 0.44
ACGTcount: A:0.33, C:0.25, G:0.18, T:0.23
Consensus pattern (21 bp):
TCAAGATTCGCAACGCGATTA
Found at i:36139 original size:22 final size:22
Alignment explanation
Indices: 36111--36173 Score: 69
Period size: 25 Copynumber: 2.9 Consensus size: 22
36101 GCAACACGAT
36111 TTTGAAAAATGTGTTGCGAGAG
1 TTTGAAAAATGTGTTGCGAGAG
*
36133 TTTGAAAAACGTGTTGTTGCGATAG
1 TTTGAAAAA--TG-TGTTGCGAGAG
36158 --TGAAAAA-GTGTTGCGA
1 TTTGAAAAATGTGTTGCGA
36174 TAGTGAAAAA
Statistics
Matches: 37, Mismatches: 1, Indels: 9
0.79 0.02 0.19
Matches are distributed among these distances:
19 8 0.22
20 1 0.03
22 9 0.24
23 7 0.19
24 2 0.05
25 10 0.27
ACGTcount: A:0.32, C:0.06, G:0.30, T:0.32
Consensus pattern (22 bp):
TTTGAAAAATGTGTTGCGAGAG
Found at i:36171 original size:19 final size:19
Alignment explanation
Indices: 36147--36183 Score: 74
Period size: 19 Copynumber: 1.9 Consensus size: 19
36137 AAAAACGTGT
36147 TGTTGCGATAGTGAAAAAG
1 TGTTGCGATAGTGAAAAAG
36166 TGTTGCGATAGTGAAAAA
1 TGTTGCGATAGTGAAAAA
36184 TCCAAAATAA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.38, C:0.05, G:0.30, T:0.27
Consensus pattern (19 bp):
TGTTGCGATAGTGAAAAAG
Found at i:36618 original size:21 final size:21
Alignment explanation
Indices: 36594--36914 Score: 275
Period size: 21 Copynumber: 15.8 Consensus size: 21
36584 GCGATTTTCA
*
36594 ATCGCAACGCGAACTTCGACT
1 ATCGCAACGCGAACTTGGACT
* **
36615 ATCGCAA--CGAATTTGGAAA
1 ATCGCAACGCGAACTTGGACT
* * **
36634 ATCACAACGCGAATTTGGAAA
1 ATCGCAACGCGAACTTGGACT
*
36655 ATCGCAACGTGAACTTGGACT
1 ATCGCAACGCGAACTTGGACT
* * **
36676 ATTGCAA--CGAATTTGGAAA
1 ATCGCAACGCGAACTTGGACT
36695 ATCGCAACGCGAACTTGGACT
1 ATCGCAACGCGAACTTGGACT
36716 ATCGCAACGCGAACTTGGACT
1 ATCGCAACGCGAACTTGGACT
* *
36737 ATCGCAACGTGAACTTAGACT
1 ATCGCAACGCGAACTTGGACT
* **
36758 ATCGCAA--CGAATTTGGAAA
1 ATCGCAACGCGAACTTGGACT
* *
36777 ACCGCAACGCGAACTTCGACT
1 ATCGCAACGCGAACTTGGACT
* * * **
36798 ATCGTAA--CGAATTTGAAAA
1 ATCGCAACGCGAACTTGGACT
* *
36817 ATCGCAACGTGAACTTCGACT
1 ATCGCAACGCGAACTTGGACT
* * **
36838 GTCGCAA--CGAATTTGGAAA
1 ATCGCAACGCGAACTTGGACT
*
36857 ATCGCAACGTGAACTTGGACT
1 ATCGCAACGCGAACTTGGACT
*
36878 ATCGCAACGTGAACTTGGACT
1 ATCGCAACGCGAACTTGGACT
36899 ATCGCAACGCGAACTT
1 ATCGCAACGCGAACTT
36915 CGAACGTGAA
Statistics
Matches: 233, Mismatches: 57, Indels: 20
0.75 0.18 0.06
Matches are distributed among these distances:
19 67 0.29
21 166 0.71
ACGTcount: A:0.34, C:0.23, G:0.21, T:0.21
Consensus pattern (21 bp):
ATCGCAACGCGAACTTGGACT
Found at i:36659 original size:40 final size:40
Alignment explanation
Indices: 36594--37199 Score: 367
Period size: 40 Copynumber: 15.2 Consensus size: 40
36584 GCGATTTTCA
* * ** * **
36594 ATCGCAACGCGAACTTCGACTATCGCAACGAATTTGGAAA
1 ATCGCAACGCGAATTTGGAAAATCGCAACGAACTTGGACT
*
36634 ATCACAACGCGAATTTGGAAAATCGCAACGTGAACTTGGACT
1 ATCGCAACGCGAATTTGGAAAATCGCAAC--GAACTTGGACT
*
36676 ATTGCAA--CGAATTTGGAAAATCGCAACGCGAACTTGGACT
1 ATCGCAACGCGAATTTGGAAAATCGCAA--CGAACTTGGACT
* ** *
36716 ATCGCAACGCGAACTTGGACTATCGCAACGTGAACTTAGACT
1 ATCGCAACGCGAATTTGGAAAATCGCAAC--GAACTTGGACT
* *
36758 ATCGCAA--CGAATTTGGAAAACCGCAACGCGAACTTCGACT
1 ATCGCAACGCGAATTTGGAAAATCGCAA--CGAACTTGGACT
* * *
36798 ATCGTAA--CGAATTTGAAAAATCGCAACGTGAACTTCGACT
1 ATCGCAACGCGAATTTGGAAAATCGCAAC--GAACTTGGACT
*
36838 GTCGCAA--CGAATTTGGAAAATCGCAACGTGAACTTGGACT
1 ATCGCAACGCGAATTTGGAAAATCGCAAC--GAACTTGGACT
* * ** *
36878 ATCGCAACGTGAACTTGGACTATCGCAACG--C--GAACT
1 ATCGCAACGCGAATTTGGAAAATCGCAACGAACTTGGACT
* * **
36914 -TCG-AACGTGAACTTGGACTATCGCAACGCGAACTTGGACT
1 ATCGCAACGCGAATTTGGAAAATCGCAA--CGAACTTGGACT
* * ** * * **
36954 ATCGCAACGTGAACTTGGACTATCGCGACGAATTTGGAAA
1 ATCGCAACGCGAATTTGGAAAATCGCAACGAACTTGGACT
* * * ** *
36994 ATCGCAATGCGAACTTCGACTATCGCAACGCGAACTTCGACT
1 ATCGCAACGCGAATTTGGAAAATCGCAA--CGAACTTGGACT
* *
37036 ATCGCAA--CAAATTTGAAAAATCGCAACGTGAACTTGGACT
1 ATCGCAACGCGAATTTGGAAAATCGCAAC--GAACTTGGACT
*
37076 ATCGCAA--CGAATTTGGAAAATCGCAACGCGAACTTCGACT
1 ATCGCAACGCGAATTTGGAAAATCGCAA--CGAACTTGGACT
* * * * ** *
37116 ATCGTAACGTGAACTTAGACTATCGCAACGAATTTGGAC-
1 ATCGCAACGCGAATTTGGAAAATCGCAACGAACTTGGACT
**
37155 -T-G--ACGTAAATTTGGAAAATCGCAACGCGAACTTGGACT
1 ATCGCAACGCGAATTTGGAAAATCGCAA--CGAACTTGGACT
37193 ATCGCAA
1 ATCGCAA
37200 AATCGCGTTG
Statistics
Matches: 459, Mismatches: 70, Indels: 72
0.76 0.12 0.12
Matches are distributed among these distances:
34 23 0.05
35 20 0.04
36 6 0.01
37 11 0.02
38 5 0.01
39 1 0.00
40 273 0.59
41 3 0.01
42 117 0.25
ACGTcount: A:0.34, C:0.23, G:0.21, T:0.22
Consensus pattern (40 bp):
ATCGCAACGCGAATTTGGAAAATCGCAACGAACTTGGACT
Found at i:36688 original size:61 final size:61
Alignment explanation
Indices: 36594--37199 Score: 528
Period size: 61 Copynumber: 10.1 Consensus size: 61
36584 GCGATTTTCA
* * **
36594 ATCGCAACGCGAACTTCGACTATCGCAACGAATTTGGAAAATCACAACGCGAATTTGGAAA
1 ATCGCAACGCGAACTTCGACTATCGCAACGAATTTGGAAAATCGCAACGCGAACTTGGACT
* * *
36655 ATCGCAACGTGAACTTGGACTATTGCAACGAATTTGGAAAATCGCAACGCGAACTTGGACT
1 ATCGCAACGCGAACTTCGACTATCGCAACGAATTTGGAAAATCGCAACGCGAACTTGGACT
* * * ** * **
36716 ATCGCAACGCGAACTTGGACTATCGCAACGTGAACTTAGACTATCGCAA--CGAATTTGGAAA
1 ATCGCAACGCGAACTTCGACTATCGCAAC--GAATTTGGAAAATCGCAACGCGAACTTGGACT
* * * * *
36777 ACCGCAACGCGAACTTCGACTATCGTAACGAATTTGAAAAATCGCAACGTGAACTTCGACT
1 ATCGCAACGCGAACTTCGACTATCGCAACGAATTTGGAAAATCGCAACGCGAACTTGGACT
* * * ** * ** *
36838 GTCGCAA--CGAATTTGGAAAATCGCAACGTGAACTTGGACTATCGCAACGTGAACTTGGACT
1 ATCGCAACGCGAACTTCGACTATCGCAAC--GAATTTGGAAAATCGCAACGCGAACTTGGACT
* * **
36899 ATCGCAACGCGAACTTCGA--A-CG---TGAACTTGGACTATCGCAACGCGAACTTGGACT
1 ATCGCAACGCGAACTTCGACTATCGCAACGAATTTGGAAAATCGCAACGCGAACTTGGACT
* * * * *
36954 ATCGCAACGTGAACTTGGACTATCGCGACGAATTTGGAAAATCGCAATGCGAACTTCGACT
1 ATCGCAACGCGAACTTCGACTATCGCAACGAATTTGGAAAATCGCAACGCGAACTTGGACT
* * *
37015 ATCGCAACGCGAACTTCGACTATCGCAACAAATTTGAAAAATCGCAACGTGAACTTGGACT
1 ATCGCAACGCGAACTTCGACTATCGCAACGAATTTGGAAAATCGCAACGCGAACTTGGACT
* * ** * * ** * * *
37076 ATCGCAA--CGAATTTGGAAAATCGCAACGCGAACTTCGACTATCGTAACGTGAACTTAGACT
1 ATCGCAACGCGAACTTCGACTATCGCAA--CGAATTTGGAAAATCGCAACGCGAACTTGGACT
* * *
37137 ATCGCAA--CGAATTTGGACTGA-CG-TA--AATTTGGAAAATCGCAACGCGAACTTGGACT
1 ATCGCAACGCGAACTTCGACT-ATCGCAACGAATTTGGAAAATCGCAACGCGAACTTGGACT
37193 ATCGCAA
1 ATCGCAA
37200 AATCGCGTTG
Statistics
Matches: 444, Mismatches: 84, Indels: 39
0.78 0.15 0.07
Matches are distributed among these distances:
55 48 0.11
56 31 0.07
57 1 0.00
58 2 0.00
59 43 0.10
60 3 0.01
61 293 0.66
62 1 0.00
63 22 0.05
ACGTcount: A:0.34, C:0.23, G:0.21, T:0.22
Consensus pattern (61 bp):
ATCGCAACGCGAACTTCGACTATCGCAACGAATTTGGAAAATCGCAACGCGAACTTGGACT
Found at i:36926 original size:34 final size:34
Alignment explanation
Indices: 36883--36948 Score: 132
Period size: 34 Copynumber: 1.9 Consensus size: 34
36873 GGACTATCGC
36883 AACGTGAACTTGGACTATCGCAACGCGAACTTCG
1 AACGTGAACTTGGACTATCGCAACGCGAACTTCG
36917 AACGTGAACTTGGACTATCGCAACGCGAACTT
1 AACGTGAACTTGGACTATCGCAACGCGAACTT
36949 GGACTATCGC
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
34 32 1.00
ACGTcount: A:0.30, C:0.26, G:0.23, T:0.21
Consensus pattern (34 bp):
AACGTGAACTTGGACTATCGCAACGCGAACTTCG
Found at i:36946 original size:21 final size:21
Alignment explanation
Indices: 36917--37199 Score: 223
Period size: 21 Copynumber: 14.1 Consensus size: 21
36907 GCGAACTTCG
*
36917 AACGTGAACTTGGACTATCGC
1 AACGCGAACTTGGACTATCGC
36938 AACGCGAACTTGGACTATCGC
1 AACGCGAACTTGGACTATCGC
*
36959 AACGTGAACTTGGACTATCGC
1 AACGCGAACTTGGACTATCGC
* * **
36980 GA--CGAATTTGGAAAATCGC
1 AACGCGAACTTGGACTATCGC
* *
36999 AATGCGAACTTCGACTATCGC
1 AACGCGAACTTGGACTATCGC
*
37020 AACGCGAACTTCGACTATCGC
1 AACGCGAACTTGGACTATCGC
* * * **
37041 AA--CAAATTTGAAAAATCGC
1 AACGCGAACTTGGACTATCGC
*
37060 AACGTGAACTTGGACTATCGC
1 AACGCGAACTTGGACTATCGC
* **
37081 AA--CGAATTTGGAAAATCGC
1 AACGCGAACTTGGACTATCGC
* *
37100 AACGCGAACTTCGACTATCGT
1 AACGCGAACTTGGACTATCGC
* *
37121 AACGTGAACTTAGACTATCGC
1 AACGCGAACTTGGACTATCGC
*
37142 AA--CGAATTTGGAC--T-G-
1 AACGCGAACTTGGACTATCGC
** * **
37157 -ACGTAAATTTGGAAAATCGC
1 AACGCGAACTTGGACTATCGC
37177 AACGCGAACTTGGACTATCGC
1 AACGCGAACTTGGACTATCGC
37198 AA
1 AA
37200 AATCGCGTTG
Statistics
Matches: 201, Mismatches: 48, Indels: 26
0.73 0.17 0.09
Matches are distributed among these distances:
14 1 0.00
16 9 0.04
17 1 0.00
18 1 0.00
19 51 0.25
21 138 0.69
ACGTcount: A:0.34, C:0.23, G:0.21, T:0.22
Consensus pattern (21 bp):
AACGCGAACTTGGACTATCGC
Found at i:36947 original size:55 final size:55
Alignment explanation
Indices: 36862--37033 Score: 209
Period size: 55 Copynumber: 3.0 Consensus size: 55
36852 GGAAAATCGC
*
36862 AACGTGAACTTGGACTATCGCAACGTGAACTTGGACTATCGCAACGCGAACTTCG
1 AACGTGAACTTGGACTATCGCAACGCGAACTTGGACTATCGCAACGCGAACTTCG
* *
36917 AACGTGAACTTGGACTATCGCAACGCGAACTTGGACTATCGCAACGTGAACTTGG
1 AACGTGAACTTGGACTATCGCAACGCGAACTTGGACTATCGCAACGCGAACTTCG
* * ** * *
36972 ACTATCGCGACGAATTTGGAAAATCGCAATGCGAACTTCGACTATCGCAACGCGAACTTCG
1 A--A---CG-TGAACTTGGACTATCGCAACGCGAACTTGGACTATCGCAACGCGAACTTCG
37033 A
1 A
37034 CTATCGCAAC
Statistics
Matches: 100, Mismatches: 11, Indels: 6
0.85 0.09 0.05
Matches are distributed among these distances:
55 53 0.53
57 1 0.01
60 2 0.02
61 44 0.44
ACGTcount: A:0.30, C:0.25, G:0.23, T:0.22
Consensus pattern (55 bp):
AACGTGAACTTGGACTATCGCAACGCGAACTTGGACTATCGCAACGCGAACTTCG
Found at i:37450 original size:14 final size:14
Alignment explanation
Indices: 37431--37457 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
37421 ATGGACGGTT
37431 TTTATCTAATTTTC
1 TTTATCTAATTTTC
37445 TTTATCTAATTTT
1 TTTATCTAATTTT
37458 AGTGATAAAG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.22, C:0.11, G:0.00, T:0.67
Consensus pattern (14 bp):
TTTATCTAATTTTC
Found at i:41274 original size:60 final size:59
Alignment explanation
Indices: 41201--41355 Score: 161
Period size: 60 Copynumber: 2.6 Consensus size: 59
41191 TTAAATTGGT
* * * *
41201 TCCTAAACGTTTGAATA-TTCTGATTTTATCTCCAAACCATGACTCATATTT-TAATTTAG
1 TCCTAAACTTTTGAATATTTC-AATTTCATCTCAAAACCATGAC-CATATTTCTAATTTAG
* * * * *
41260 TCCTTAAACTTTTGAACATTTCAATTTCATCTCAAAACTATGACCCTTTTTCTAATTTGG
1 TCC-TAAACTTTTGAATATTTCAATTTCATCTCAAAACCATGACCATATTTCTAATTTAG
* *
41320 TCCCAAACTTTTGAATATTACAATTTCATCTTCAAA
1 TCCTAAACTTTTGAATATTTCAATTTCATC-TCAAA
41356 TTCATCCAAA
Statistics
Matches: 80, Mismatches: 12, Indels: 7
0.81 0.12 0.07
Matches are distributed among these distances:
59 32 0.40
60 45 0.56
61 3 0.04
ACGTcount: A:0.31, C:0.21, G:0.06, T:0.42
Consensus pattern (59 bp):
TCCTAAACTTTTGAATATTTCAATTTCATCTCAAAACCATGACCATATTTCTAATTTAG
Found at i:43336 original size:31 final size:31
Alignment explanation
Indices: 43295--43354 Score: 102
Period size: 31 Copynumber: 1.9 Consensus size: 31
43285 TTTGACCACT
43295 TTCGGTTTTATTTAACTAAGATGTGATCATG
1 TTCGGTTTTATTTAACTAAGATGTGATCATG
* *
43326 TTCGTTTTTATTTAATTAAGATGTGATCA
1 TTCGGTTTTATTTAACTAAGATGTGATCA
43355 CTTTTGTATC
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
31 27 1.00
ACGTcount: A:0.27, C:0.08, G:0.17, T:0.48
Consensus pattern (31 bp):
TTCGGTTTTATTTAACTAAGATGTGATCATG
Found at i:59684 original size:26 final size:25
Alignment explanation
Indices: 59647--59706 Score: 68
Period size: 26 Copynumber: 2.4 Consensus size: 25
59637 TTAAATAATT
* *
59647 TTTTTAATATTATAATATA-TATTAA
1 TTTTTAAAATTA-AATAAATTATTAA
59672 CTTTTTAAAATTAAATAAATTATTAA
1 -TTTTTAAAATTAAATAAATTATTAA
*
59698 TTTTAAAAA
1 TTTTTAAAA
59707 ATAATTATAC
Statistics
Matches: 30, Mismatches: 3, Indels: 3
0.83 0.08 0.08
Matches are distributed among these distances:
25 13 0.43
26 17 0.57
ACGTcount: A:0.48, C:0.02, G:0.00, T:0.50
Consensus pattern (25 bp):
TTTTTAAAATTAAATAAATTATTAA
Found at i:64229 original size:91 final size:89
Alignment explanation
Indices: 64074--64348 Score: 433
Period size: 91 Copynumber: 3.0 Consensus size: 89
64064 AAATTACATA
* * * * *
64074 ACTTTTAACATATTAGGTAGCTCTTTACCGTTTTTATCATAATAAAACTGATTTTGTCATATTTT
1 ACTTTCAACATATCAGGTAGCTCTTTACCG-TTTTGTCATAATGAAACTGGTTTTGTCATATTTT
64139 TACTTGTTATATTGTAAAGTATCGAT
65 TAC-TGTTATATTGTAAAGTATCGAT
64165 ACTTTCAACATATCAGGTAGCTCTTTACCAGTTTTGTCATAATGAAACTGGTTTTGTCATATTTT
1 ACTTTCAACATATCAGGTAGCTCTTTACC-GTTTTGTCATAATGAAACTGGTTTTGTCATATTTT
*
64230 TACATGTTATATTGTTAAGTATCGAT
65 TAC-TGTTATATTGTAAAGTATCGAT
*
64256 ACTTTCAACATATCAGGTAGCTCTTTACCGGTTTTGTCATAATGAAACTGGTTTTGCCATATTTT
1 ACTTTCAACATATCAGGTAGCTCTTTACC-GTTTTGTCATAATGAAACTGGTTTTGTCATATTTT
64321 TAACTGTTATATTGTAAAGTATCGAT
65 T-ACTGTTATATTGTAAAGTATCGAT
64347 AC
1 AC
64349 ATTTTTATAA
Statistics
Matches: 172, Mismatches: 10, Indels: 4
0.92 0.05 0.02
Matches are distributed among these distances:
91 169 0.98
92 3 0.02
ACGTcount: A:0.28, C:0.14, G:0.13, T:0.44
Consensus pattern (89 bp):
ACTTTCAACATATCAGGTAGCTCTTTACCGTTTTGTCATAATGAAACTGGTTTTGTCATATTTTT
ACTGTTATATTGTAAAGTATCGAT
Found at i:64998 original size:200 final size:199
Alignment explanation
Indices: 64465--65112 Score: 887
Period size: 198 Copynumber: 3.3 Consensus size: 199
64455 GTAAACGTAT
* * * * **
64465 GTGTCGATACATTT-TCTAAAAATATCGACCCCAAAAATATTGAAACAAATAATTATAATGTAAT
1 GTGTCGATACATTTAT-TAAAAGTATCGATCCCAAAAACATCGAAACCGATAATTATAATGTAAT
* * * *
64529 AGGTAAATTAACAATGTAACCGGTATAAATATACCGG-TTAATTAGAAAACATGTCAACATAATG
65 AGGTAAATTTACAATGTAACCGGTATAAATATACCGGTTTTATGAGAAAATATGTCAACATAATG
* ** * *
64593 TATCGACACTTGTGGAATTTGTGTCGATACTTATTGTCTAGAATGAATCCCCAAACGAGGTGCAC
130 TATCGACACTTTTTAAATTTGTGTCGATACTT-TTGTCCAGAATGAAT-GCCAAACGAGGTGCAC
64658 GCATAAA
193 GCATAAA
*
64665 GTGTCGATAAATTTATTAAAAGTATCGATCCCAAAAACATCGAAA-C-ATAATTATAATGTAATA
1 GTGTCGATACATTTATTAAAAGTATCGATCCCAAAAACATCGAAACCGATAATTATAATGTAATA
* *
64728 GGTAAATTTACAATGTAACCGGTATAAATATACCGGTTTTATGAGAGAATATGTCAACATATTGT
66 GGTAAATTTACAATGTAACCGGTATAAATATACCGGTTTTATGAGAAAATATGTCAACATAATGT
* *
64793 ATCGACACTTTTTAAATTTGTGTCGATACATTTTGTCCAGAATGAATGTCAAACGAGGTGCACTC
131 ATCGACACTTTTTAAATTTGTGTCGATAC-TTTTGTCCAGAATGAATGCCAAACGAGGTGCACGC
64858 ATAAA
195 ATAAA
* * *
64863 GTGTCGATACATTTATTAAAAGTATCAATCCCAAAAACATTGAAACCGATAATTACAATGTAATA
1 GTGTCGATACATTTATTAAAAGTATCGATCCCAAAAACATCGAAACCGATAATTATAATGTAATA
** * * * *
64928 GGTAAATTTACAATGTGCCCGGTAGAAATATACCGGTTTTATGAGAAAATAGGTCTACATAATAT
66 GGTAAATTTACAATGTAACCGGTATAAATATACCGGTTTTATGAGAAAATATGTCAACATAATGT
* * *
64993 ATCGACACTTTTTAAGTTTGTGTCGATACTTTT-TTCAGAATGAATGCCCAACGAGGTGCACGCA
131 ATCGACACTTTTTAAATTTGTGTCGATACTTTTGTCCAGAATGAATGCCAAACGAGGTGCACGCA
65057 TAAA
196 TAAA
* * *
65061 GTGTCGATACGTTTA--AAATTGTATCGATCCAAAAAACATCGAAACCGATAAT
1 GTGTCGATACATTTATTAAA-AGTATCGATCCCAAAAACATCGAAACCGATAAT
65113 ATGCTATTGT
Statistics
Matches: 401, Mismatches: 41, Indels: 15
0.88 0.09 0.03
Matches are distributed among these distances:
196 3 0.01
197 29 0.07
198 159 0.40
199 68 0.17
200 141 0.35
201 1 0.00
ACGTcount: A:0.39, C:0.15, G:0.16, T:0.30
Consensus pattern (199 bp):
GTGTCGATACATTTATTAAAAGTATCGATCCCAAAAACATCGAAACCGATAATTATAATGTAATA
GGTAAATTTACAATGTAACCGGTATAAATATACCGGTTTTATGAGAAAATATGTCAACATAATGT
ATCGACACTTTTTAAATTTGTGTCGATACTTTTGTCCAGAATGAATGCCAAACGAGGTGCACGCA
TAAA
Found at i:65333 original size:16 final size:16
Alignment explanation
Indices: 65312--65348 Score: 65
Period size: 16 Copynumber: 2.3 Consensus size: 16
65302 TGATATAACA
65312 TAACCGATCTAAATTT
1 TAACCGATCTAAATTT
*
65328 TAACCGGTCTAAATTT
1 TAACCGATCTAAATTT
65344 TAACC
1 TAACC
65349 AGTCACTTAT
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
16 20 1.00
ACGTcount: A:0.35, C:0.22, G:0.08, T:0.35
Consensus pattern (16 bp):
TAACCGATCTAAATTT
Found at i:65524 original size:19 final size:19
Alignment explanation
Indices: 65495--65542 Score: 89
Period size: 19 Copynumber: 2.6 Consensus size: 19
65485 CATATATTTT
65495 TATTTTT-TATTTATTTAA
1 TATTTTTGTATTTATTTAA
65513 TATTTTTGTATTTATTTAA
1 TATTTTTGTATTTATTTAA
65532 TATTTTTGTAT
1 TATTTTTGTAT
65543 CCATTATCAA
Statistics
Matches: 29, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
18 7 0.24
19 22 0.76
ACGTcount: A:0.25, C:0.00, G:0.04, T:0.71
Consensus pattern (19 bp):
TATTTTTGTATTTATTTAA
Found at i:66869 original size:24 final size:24
Alignment explanation
Indices: 66842--66897 Score: 103
Period size: 24 Copynumber: 2.3 Consensus size: 24
66832 CTATTCTTTC
66842 GCTTCAATTAAGCTCAAATTTTAG
1 GCTTCAATTAAGCTCAAATTTTAG
*
66866 GCTTCAATTGAGCTCAAATTTTAG
1 GCTTCAATTAAGCTCAAATTTTAG
66890 GCTTCAAT
1 GCTTCAAT
66898 CGAACTTTTA
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
24 31 1.00
ACGTcount: A:0.30, C:0.18, G:0.14, T:0.38
Consensus pattern (24 bp):
GCTTCAATTAAGCTCAAATTTTAG
Done.