Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01005485.1 Hibiscus syriacus cultivar Beakdansim tig00012601_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  65763

Tables:   1   

This is table  1  of  1  ( 23 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
6599--6650
16
3.4
15
77
12
52
59
0
0
40
0.97
6640--6761
48
2.5
48
77
13
135
53
0
2
44
1.14
7488--7564
3
27.0
3
84
10
108
32
1
0
66
1.00
7971--8009
19
2.1
19
90
9
62
58
12
23
5
1.54
8063--8095
16
2.1
16
94
0
57
78
0
21
0
0.75
9615--9675
24
2.7
24
80
12
67
34
1
1
62
1.15
20309--20342
10
3.3
10
95
4
59
88
0
11
0
0.52
20309--20342
11
3.2
11
91
4
52
88
0
11
0
0.52
21376--21886
82
6.2
82
95
2
920
26
13
23
36
1.92
22702--23128
113
3.8
113
87
3
660
37
14
20
27
1.92
23453--23527
3
25.0
3
91
0
123
32
2
0
65
1.07
23934--23985
17
2.8
19
74
11
54
57
11
26
3
1.51
23934--24000
34
1.9
36
84
6
93
59
11
23
4
1.50
24040--24071
15
2.1
15
94
0
55
78
0
21
0
0.76
24926--24976
21
2.5
21
84
9
61
54
0
0
45
0.99
30386--30429
22
2.0
22
83
12
56
40
6
22
29
1.80
36495--36521
3
9.0
3
100
0
54
33
0
0
66
0.92
38244--38306
22
2.9
22
75
0
63
26
25
20
26
1.99
45003--45065
22
2.9
21
90
2
81
26
23
25
23
2.00
45013--45065
22
2.4
22
96
0
97
28
24
26
20
1.99
53133--53184
20
2.7
20
75
22
56
63
0
17
19
1.31
59114--59151
8
4.6
8
93
6
67
89
0
0
10
0.49
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
59114--59151
17
2.3
17
95
4
69
89
0
0
10
0.49

Tables:   1

The End!