genome.fa.s5486.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01005486.1 Hibiscus syriacus cultivar Beakdansim tig00012606_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  117429

Tables:   1   

This is table  1  of  1  ( 97 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2752--2812	25	2.3	26	86	8	88	13	8	32	45	1.72
3346--3391	18	2.6	17	82	3	56	28	26	8	36	1.86
5065--5116	18	2.9	18	88	0	77	38	21	23	17	1.93
11072--11105	16	2.1	16	88	0	50	58	11	14	14	1.63
13390--13429	21	1.9	21	94	0	71	30	15	7	47	1.72
13424--13522	33	3.0	33	94	1	164	32	7	15	45	1.73
13892--13946	15	3.6	15	78	4	65	32	12	12	41	1.81
13894--13943	16	3.2	16	77	2	57	36	10	12	42	1.76
14037--14068	16	2.0	17	88	11	50	43	21	21	12	1.86
19943--19984	21	2.0	21	86	4	59	61	0	7	30	1.22
20948--21015	33	2.1	33	91	0	109	29	17	7	45	1.75
21603--21747	36	4.1	36	93	1	231	39	21	8	31	1.83
22312--22348	10	3.6	10	85	7	56	40	0	59	0	0.97
22651--22677	2	13.5	2	100	0	54	48	0	0	51	1.00
22849--22943	31	3.1	30	69	19	81	35	23	4	36	1.74
22847--22936	29	3.1	27	69	20	74	37	23	4	34	1.75
22807--22961	60	2.6	60	84	2	195	38	19	5	37	1.74
22825--22985	60	2.7	59	81	6	155	35	20	4	39	1.74
23565--23629	2	32.5	2	96	0	121	49	0	1	49	1.10
28695--28731	19	1.9	19	88	0	56	48	10	2	37	1.52
29650--29674	7	3.6	7	100	0	50	72	0	0	28	0.86
31353--31385	4	8.5	4	93	6	59	24	0	24	51	1.48
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33023--33105	29	2.8	29	92	1	139	43	9	14	32	1.78
36474--36503	15	2.0	15	93	0	51	20	0	23	56	1.42
37792--37874	29	2.8	29	92	1	139	43	9	14	32	1.78
42703--42813	24	4.6	24	74	14	84	28	13	17	40	1.87
42776--42865	12	7.5	12	68	9	58	26	11	22	40	1.87
42696--42804	49	2.2	48	77	4	112	27	13	17	41	1.87
42767--42869	24	4.3	24	86	0	134	26	13	23	36	1.92
46471--46570	51	2.0	51	97	0	191	34	15	18	33	1.91
46882--46916	17	2.1	17	88	0	52	54	0	0	45	0.99
48005--48049	21	2.1	21	87	0	63	40	8	0	51	1.33
48666--48710	2	23.0	2	95	4	83	48	0	0	51	1.00
50831--50878	2	25.5	2	87	12	75	52	0	0	47	1.00
50763--50971	100	2.0	103	79	11	225	54	7	6	32	1.53
51026--51201	2	90.5	2	77	13	145	49	1	3	46	1.26
51452--51587	69	2.0	69	97	0	254	52	15	5	26	1.63
54659--54706	25	1.9	25	91	0	78	25	4	4	66	1.27
54689--54738	22	2.3	21	83	13	57	28	4	0	68	1.08
56389--56452	24	2.7	22	88	11	67	37	1	6	54	1.35
56397--56452	24	2.3	24	96	3	103	37	0	7	55	1.27
57285--57321	2	18.5	2	100	0	74	48	0	0	51	1.00
57689--57718	2	15.5	2	93	6	53	50	0	0	50	1.00
57682--57776	24	3.7	26	73	15	81	54	0	0	45	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
57730--57769	19	2.1	19	85	0	53	55	0	0	45	0.99
61046--61123	37	2.3	33	77	16	86	14	10	35	39	1.80
61170--61264	28	3.5	28	88	2	140	16	7	29	46	1.74
61554--61584	16	1.9	16	93	0	53	29	22	6	41	1.78
62476--62513	20	1.9	20	88	0	58	44	0	52	2	1.14
63478--63543	34	2.0	33	84	3	87	37	6	10	45	1.64
63652--63752	28	3.5	28	81	6	121	38	10	10	39	1.76
65534--65597	2	32.0	2	100	0	128	50	0	50	0	1.00
71089--71187	52	1.9	52	97	0	189	25	20	8	46	1.77
71394--71471	32	2.4	32	82	0	93	32	11	7	48	1.68
72958--73004	23	2.2	21	88	11	69	48	0	0	51	1.00
72958--72998	20	2.2	18	87	12	57	51	0	0	48	1.00
72959--73010	22	2.4	21	81	9	68	50	0	0	50	1.00
76219--76270	25	2.1	25	85	7	70	36	26	28	7	1.84
79058--79100	2	22.0	2	95	4	79	48	0	0	51	1.00
82928--83007	24	3.5	23	80	8	83	2	26	3	67	1.20
84866--84892	2	13.5	2	100	0	54	51	0	0	48	1.00
87464--87883	116	3.5	117	84	6	529	40	4	5	49	1.46
87909--87948	22	1.9	22	90	10	66	52	0	10	37	1.35
87468--87937	236	2.0	230	79	10	504	41	4	5	48	1.46
88717--88905	65	2.9	64	80	9	206	27	18	22	31	1.97
91443--91527	44	1.9	45	83	7	111	24	21	23	30	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
95283--95324	21	2.0	21	90	0	66	19	28	23	28	1.98
95355--95421	17	4.0	17	84	9	84	29	14	31	23	1.95
95357--95404	15	3.1	15	90	6	69	27	16	31	25	1.97
95357--95421	32	2.0	33	87	3	96	30	15	29	24	1.96
98245--98452	65	3.2	64	83	9	262	27	18	23	30	1.98
98219--98404	65	2.9	64	84	5	250	29	19	22	29	1.98
99198--99295	31	3.2	28	77	14	88	41	6	6	45	1.53
100874--100901	13	2.2	13	100	0	56	32	25	14	28	1.94
105611--105659	2	24.5	2	95	0	89	48	0	0	51	1.00
106698--106728	16	1.9	16	93	0	53	19	6	0	74	1.03
106771--106848	34	2.3	34	100	0	156	24	7	2	65	1.32
106790--106844	17	3.2	17	66	19	51	23	10	1	63	1.36
109206--109234	12	2.4	12	100	0	58	27	27	13	31	1.94
110383--110580	95	2.1	94	88	3	301	33	16	17	32	1.92
111856--112037	36	5.1	36	65	15	133	27	16	14	41	1.88
111848--112059	72	2.9	72	95	0	370	28	16	14	40	1.88
112165--112239	39	1.9	39	88	0	114	25	21	14	38	1.91
112255--112324	37	1.9	37	88	2	106	24	20	14	41	1.89
112269--112341	37	2.0	37	83	0	92	30	19	10	39	1.86
112062--112571	101	5.0	102	91	1	790	31	19	12	37	1.89
112361--112442	36	2.3	35	87	4	110	26	19	14	39	1.90
112458--112543	36	2.4	36	86	3	111	26	19	13	39	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
112528--112605	30	2.6	30	86	6	106	39	16	8	34	1.80
112398--112706	101	3.1	97	80	10	240	33	19	12	34	1.90
112635--112746	35	3.2	34	86	8	152	44	16	11	26	1.82
112635--112748	37	3.2	36	86	6	142	45	16	11	26	1.81
113080--113138	2	31.0	2	80	10	70	47	3	0	49	1.18
114263--114293	16	1.9	16	93	0	53	19	6	0	74	1.03
114494--114567	13	5.5	13	72	13	53	14	5	5	74	1.18
114524--114573	17	2.8	17	84	9	55	14	4	4	78	1.05
114516--114586	14	5.1	13	75	16	54	16	5	2	74	1.13

Tables:   1

The End!