genome.fa.s5488.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01005488.1 Hibiscus syriacus cultivar Beakdansim tig00012630_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  201507

Tables:   1   

This is table  1  of  1  ( 89 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6879--6903	2	12.5	2	100	0	50	52	0	0	48	1.00
8350--8382	14	2.4	14	90	5	50	51	3	0	45	1.16
9674--9704	2	15.5	2	100	0	62	51	0	0	48	1.00
11013--11059	20	2.3	20	92	0	76	31	10	23	34	1.89
11863--12022	64	2.5	65	80	6	173	33	20	21	24	1.97
12010--12067	20	2.7	20	81	10	62	32	18	20	27	1.97
13619--13683	23	2.8	23	83	0	85	20	24	24	30	1.98
24856--24887	2	16.0	2	100	0	64	50	0	0	50	1.00
26600--26625	3	8.7	3	100	0	52	34	34	0	30	1.58
27113--27139	11	2.5	11	100	0	54	85	0	14	0	0.61
28459--28499	19	2.2	19	87	12	59	21	29	14	34	1.93
30266--30311	21	2.2	21	92	0	74	30	23	17	28	1.97
40372--40433	30	2.1	30	93	0	106	41	9	14	33	1.79
41621--41741	54	2.2	54	89	0	188	30	24	20	23	1.99
44651--44682	16	2.0	16	93	0	55	46	15	12	25	1.81
47449--47521	23	3.4	21	72	10	67	24	21	19	34	1.96
47449--47505	23	2.6	22	86	5	71	24	22	15	36	1.94
50027--50143	51	2.2	54	87	4	168	31	27	17	23	1.97
60480--60515	18	2.0	18	94	0	63	22	11	13	52	1.72
62698--62732	5	6.8	5	96	3	61	17	82	0	0	0.66
65536--65630	2	47.5	2	83	12	124	45	2	1	51	1.20
66727--66895	11	15.6	11	67	20	63	46	2	2	47	1.32
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
66707--66869	50	3.3	48	70	20	124	47	4	3	45	1.38
66728--66782	20	2.8	20	86	5	67	49	1	1	47	1.23
66727--66895	33	5.2	33	74	13	163	46	2	2	47	1.32
66935--66976	9	4.7	9	77	11	50	50	7	0	42	1.30
66944--66981	18	2.1	18	90	0	58	47	7	0	44	1.32
67061--67096	18	2.0	18	100	0	72	44	11	5	38	1.63
87940--87994	27	2.0	27	100	0	110	43	21	7	27	1.79
87940--87984	15	3.2	15	71	28	53	44	22	6	26	1.77
91330--91384	23	2.3	23	78	9	58	18	7	0	74	1.04
92072--92124	27	1.9	28	88	3	81	13	22	7	56	1.62
92383--92420	3	12.7	3	100	0	76	31	0	0	68	0.90
97830--97923	23	4.0	24	71	19	81	34	24	22	19	1.97
104291--104376	24	3.7	24	75	16	90	33	25	23	17	1.96
108721--108846	64	2.0	65	85	1	173	29	16	20	33	1.95
109248--109277	15	2.0	15	100	0	60	40	26	0	33	1.57
117431--117594	83	2.0	84	85	1	222	28	15	24	31	1.95
117478--117529	19	2.7	19	93	0	86	19	15	32	32	1.93
119495--119531	16	2.3	16	95	0	65	32	21	18	27	1.97
127311--127361	19	2.6	20	84	3	68	43	21	17	17	1.88
127348--127401	20	2.7	20	94	0	90	51	18	18	11	1.74
127436--127734	20	14.4	20	80	6	211	38	16	23	21	1.92
127445--127544	48	2.0	50	82	5	123	34	15	28	23	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
127415--127581	91	1.8	91	92	0	280	35	16	26	21	1.95
127587--127754	80	2.1	79	88	0	228	44	16	20	19	1.87
127567--127766	100	2.0	100	92	0	328	43	16	20	19	1.88
127723--127766	20	2.2	20	91	0	70	54	15	18	11	1.70
127844--127899	6	9.5	6	98	1	105	32	51	16	0	1.44
128584--128627	6	7.8	6	97	2	67	0	18	52	29	1.46
128713--129030	20	15.6	20	79	7	165	18	23	19	38	1.93
128715--128905	40	4.7	40	85	3	247	20	25	17	36	1.94
128723--128885	83	2.0	83	91	0	263	20	26	17	35	1.95
128713--128926	103	2.1	103	90	0	329	20	25	17	35	1.95
128980--129030	19	2.6	20	90	3	77	15	17	23	43	1.88
129613--129720	45	2.4	46	85	3	139	11	29	21	37	1.88
132494--132583	39	2.3	39	80	12	98	28	16	14	40	1.88
133927--133956	15	2.0	15	93	0	51	36	13	30	20	1.90
134366--134504	69	2.0	69	94	0	242	42	17	27	12	1.86
135179--135311	27	4.9	27	83	0	158	32	37	28	1	1.66
135182--135312	54	2.4	54	84	0	190	32	37	28	1	1.67
146539--146772	43	5.4	43	82	1	227	26	18	26	28	1.98
147215--147296	21	3.9	21	83	0	92	1	34	19	45	1.58
147215--147334	42	2.9	41	81	7	118	0	36	20	42	1.58
147265--147334	21	3.3	21	85	0	95	1	40	18	40	1.60
151301--151391	46	2.0	46	97	0	173	49	15	24	10	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
152318--152424	41	2.6	42	80	4	110	35	20	15	28	1.94
152646--152776	57	2.3	57	98	0	253	51	12	6	29	1.64
154389--154464	3	25.0	3	86	2	98	40	0	0	59	0.98
155814--155855	17	2.4	18	88	7	61	30	4	0	64	1.14
155922--155965	22	1.9	24	86	9	65	47	2	0	50	1.13
155921--155972	24	2.3	22	80	6	59	48	1	0	50	1.12
156458--156515	28	2.1	27	84	6	73	32	5	1	60	1.29
159786--159817	15	2.1	15	100	0	64	25	18	12	43	1.85
167131--167164	9	3.7	9	96	4	59	88	0	11	0	0.52
167133--167164	5	6.8	5	86	13	50	87	0	12	0	0.54
167132--167167	14	2.5	15	86	9	56	86	0	13	0	0.58
167520--167568	19	2.8	18	84	9	66	36	6	6	51	1.52
168751--169087	114	3.0	113	91	2	532	34	15	19	30	1.93
169773--170455	113	6.0	113	82	4	660	38	14	18	29	1.90
170251--170543	124	2.4	124	85	6	368	42	15	18	23	1.88
170705--170758	3	18.0	3	88	7	83	37	0	0	62	0.95
174331--174393	19	3.3	19	84	2	81	28	15	6	49	1.69
175910--175956	20	2.4	20	89	3	69	36	25	0	38	1.56
177052--177115	21	3.0	21	86	0	83	17	26	35	20	1.94
180180--180242	20	3.1	21	84	6	85	12	26	41	19	1.87
180201--180249	20	2.6	19	87	6	55	14	28	34	22	1.93
193300--193345	15	3.0	16	84	9	60	36	13	17	32	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
193312--193345	16	2.2	15	89	5	50	32	14	17	35	1.91

Tables:   1

The End!