Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01005489.1 Hibiscus syriacus cultivar Beakdansim tig00012633_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  105613

Tables:   1   

This is table  1  of  1  ( 41 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4166--4204
2
19.5
2
100
0
78
51
0
0
48
1.00
23446--23491
19
2.3
21
85
7
60
43
0
2
54
1.12
24459--24501
22
2.0
21
86
8
61
74
0
0
25
0.82
27316--27392
38
2.0
38
97
0
145
32
19
18
29
1.95
31130--31160
2
15.5
2
100
0
62
0
48
0
51
1.00
41335--41814
120
4.0
120
77
5
486
22
24
16
36
1.95
52281--52416
35
3.9
35
84
1
173
36
18
25
20
1.95
52276--52414
71
2.0
71
88
2
208
38
17
25
18
1.93
53342--53389
25
2.0
24
84
12
62
45
12
4
37
1.61
55460--55504
2
23.0
2
84
13
58
44
4
0
51
1.21
55636--55729
38
2.6
37
84
5
111
19
5
4
71
1.22
55597--55729
38
3.6
35
74
13
106
21
3
3
71
1.18
60404--60773
184
2.0
184
92
2
618
42
3
8
45
1.52
62830--62879
24
2.1
24
88
7
75
56
14
4
26
1.56
65159--65188
13
2.2
14
94
5
53
80
0
6
13
0.91
68415--68464
24
2.1
24
88
7
75
56
14
4
26
1.56
74915--74998
34
2.5
34
100
0
168
35
25
19
20
1.95
75004--75125
43
2.8
43
94
0
217
27
32
19
20
1.97
75158--75417
110
2.4
108
84
6
350
33
24
18
23
1.97
76744--76811
23
3.0
23
72
20
61
27
2
0
69
1.03
76785--76861
16
5.1
15
83
12
70
40
2
0
57
1.13
76732--76813
21
4.3
19
72
22
73
31
2
0
65
1.05
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
76752--76820
21
3.2
22
76
21
74
27
4
0
68
1.09
76809--76866
2
29.0
2
91
6
91
46
3
0
50
1.18
76896--77029
39
3.6
36
75
15
121
26
5
0
66
1.20
76900--77085
39
4.9
36
72
20
116
24
5
2
67
1.24
77130--77163
18
1.9
17
88
5
50
14
11
0
73
1.10
77117--77163
17
2.7
17
78
12
51
17
10
0
72
1.12
77216--77292
19
3.9
19
70
17
59
12
3
6
76
1.12
77231--77292
26
2.6
25
74
20
60
12
4
6
75
1.15
80508--80581
26
2.7
26
76
17
71
71
2
0
25
0.99
81680--81742
29
2.1
29
83
13
76
41
3
1
53
1.26
81815--81851
10
3.8
10
89
7
58
24
2
8
64
1.34
89213--89258
21
2.1
22
88
4
67
41
2
0
56
1.11
90815--90844
13
2.4
12
89
10
51
33
0
0
66
0.92
92046--92077
15
2.1
16
88
11
50
28
6
9
56
1.55
93349--93397
23
2.1
24
81
11
57
10
16
0
73
1.09
94279--94354
31
2.5
31
93
0
125
30
10
9
50
1.68
94596--94665
27
2.8
26
79
18
76
35
4
1
58
1.26
94820--94883
31
2.1
31
93
0
110
51
10
10
26
1.70
96273--96304
15
2.3
15
89
10
50
62
3
0
34
1.11

Tables:   1

The End!