genome.fa.s549.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000549.1 Hibiscus syriacus cultivar Beakdansim tig00001063_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  89722

Tables:   1   

This is table  1  of  1  ( 95 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3238--3289	3	17.3	3	92	7	88	65	0	0	34	0.93
4496--4544	25	2.0	25	100	0	98	36	24	22	16	1.94
8529--8574	18	2.6	17	83	10	56	45	0	0	54	0.99
8545--8583	19	2.1	18	85	4	51	41	2	0	56	1.13
9207--9326	45	2.7	45	84	2	163	28	15	13	43	1.84
13501--13532	17	1.9	17	93	6	57	40	0	40	18	1.51
13779--13815	19	1.9	19	94	0	65	32	29	16	21	1.95
13909--13951	21	2.0	21	95	0	77	34	27	18	18	1.95
13943--14044	20	5.1	20	79	11	118	29	25	19	25	1.99
13901--14016	21	5.7	20	75	11	76	32	25	18	23	1.97
17176--17215	18	2.2	18	90	0	62	52	22	2	22	1.59
17388--17660	20	14.6	20	73	13	197	35	20	20	23	1.96
17413--17569	54	2.9	54	89	1	235	36	21	19	21	1.95
17388--17671	74	3.9	73	83	4	304	35	20	20	23	1.96
17797--17876	30	2.4	34	78	20	105	56	15	3	25	1.56
17812--17877	30	2.2	30	97	0	123	56	13	3	27	1.52
19257--19362	42	2.5	42	76	3	115	26	16	33	22	1.96
19843--19886	20	2.2	20	95	0	79	52	20	11	15	1.74
19991--20132	40	3.7	39	76	12	143	20	20	23	35	1.96
19956--20093	34	3.9	34	77	11	141	19	21	22	36	1.95
20011--20113	54	1.9	54	86	4	145	19	21	24	34	1.96
19991--20114	20	6.5	20	77	14	136	20	20	24	33	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19949--20124	74	2.4	74	89	4	291	21	21	21	35	1.96
20251--20312	31	2.0	31	87	9	90	51	17	8	22	1.71
22115--22170	20	2.8	20	86	0	76	48	21	17	12	1.80
22157--22212	19	2.8	20	81	5	69	33	23	19	23	1.97
22118--22210	20	4.7	20	81	2	71	40	22	19	17	1.91
22532--22604	22	3.3	22	83	7	103	21	16	42	19	1.89
22774--22860	41	2.1	41	84	0	111	19	24	28	27	1.98
22849--22901	20	2.7	20	96	0	97	20	20	18	39	1.92
22975--23021	19	2.4	19	82	3	58	25	14	29	29	1.95
22987--23023	19	1.9	19	94	0	65	21	16	29	32	1.95
23181--23226	21	2.2	21	96	0	83	56	17	2	23	1.52
23338--23392	28	2.0	26	83	13	67	61	0	3	34	1.13
25599--25630	12	2.8	12	90	9	50	40	0	21	37	1.54
28215--28265	17	3.1	17	72	16	52	35	3	1	58	1.28
39673--39705	2	16.5	2	100	0	66	51	0	48	0	1.00
41400--41464	32	2.0	32	88	5	96	67	12	3	16	1.34
42129--42381	46	5.1	46	62	25	113	51	13	9	26	1.70
42113--42415	101	3.0	101	99	0	588	49	13	9	27	1.73
43856--44215	133	2.7	133	87	2	490	24	19	31	24	1.98
44224--44344	64	1.9	64	81	8	147	42	15	14	27	1.86
44423--44649	91	2.5	89	83	8	289	45	14	11	28	1.80
44502--44559	29	2.0	29	86	3	80	44	12	12	31	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44595--44704	29	3.8	28	87	8	150	47	16	10	26	1.78
44590--44745	29	5.2	31	80	11	139	41	13	13	31	1.83
44756--44911	66	2.4	64	86	2	204	44	14	10	31	1.78
44756--44940	64	2.9	63	84	5	210	44	13	9	31	1.76
44904--44974	37	1.9	37	86	8	101	36	8	11	43	1.71
44855--45038	99	1.8	101	83	6	250	43	11	11	32	1.78
45004--45063	31	2.0	31	93	3	104	43	10	13	33	1.77
45101--45196	36	2.6	36	80	3	111	39	14	16	29	1.88
45179--45470	107	2.8	104	78	7	329	42	11	14	31	1.81
45141--45470	104	3.1	104	75	9	337	42	11	15	31	1.82
45777--45820	20	2.2	20	91	0	70	22	2	27	47	1.63
49382--49452	37	2.0	37	86	10	105	70	9	2	16	1.26
53855--54350	229	2.2	229	97	0	931	44	7	8	39	1.62
54629--54675	20	2.4	19	89	10	76	55	10	17	17	1.69
54417--54889	181	2.6	182	88	3	675	43	14	16	26	1.85
54801--54856	20	2.8	19	81	7	67	55	8	16	19	1.67
57080--57123	21	2.1	21	91	0	70	40	11	31	15	1.83
57157--57222	33	2.0	33	90	0	105	28	0	48	22	1.51
59007--59055	19	2.6	19	93	0	80	30	2	10	57	1.43
59389--60324	199	4.7	199	92	1	1590	36	14	16	32	1.89
61788--61839	6	8.7	6	80	0	50	38	7	32	21	1.82
61788--61841	24	2.2	24	93	0	90	37	7	33	22	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
63052--63085	16	2.1	16	88	0	50	47	8	20	23	1.78
63447--63519	23	3.2	23	88	0	101	34	4	21	39	1.73
63523--63582	21	2.9	21	94	0	102	30	13	8	48	1.71
63917--64592	183	3.7	183	95	0	1201	34	15	17	32	1.91
67041--67105	25	2.6	25	95	0	112	38	10	12	38	1.78
67452--67524	23	3.2	23	88	0	101	34	4	21	39	1.73
67882--67945	23	2.8	23	85	0	83	34	6	21	37	1.79
67249--69841	430	6.0	430	97	0	4811	40	7	12	39	1.72
68312--68384	23	3.2	23	92	0	119	34	5	21	38	1.77
68743--68815	23	3.2	23	92	0	119	34	5	21	38	1.77
67249--69841	861	3.0	861	97	0	4838	40	7	12	39	1.72
69181--69245	23	2.8	23	90	0	103	35	6	20	38	1.77
69173--69250	23	3.5	22	85	3	95	35	5	20	38	1.75
69603--69675	23	3.2	23	90	0	110	35	5	20	38	1.76
73697--73741	21	2.1	22	83	4	56	26	2	4	66	1.22
74451--74491	18	2.3	18	80	20	50	36	12	29	21	1.90
74609--74717	41	2.6	42	78	9	116	38	5	0	55	1.30
79066--79097	13	2.5	13	100	0	64	40	0	15	43	1.47
83613--83700	20	4.4	19	79	11	88	27	22	14	35	1.93
83552--83700	40	3.7	40	80	7	158	30	25	12	31	1.93
83808--83851	22	2.0	21	86	4	61	22	40	9	27	1.84
83859--83896	16	2.5	15	84	12	51	28	5	0	65	1.14
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
84638--84683	24	1.9	24	95	0	83	23	21	21	32	1.98
84637--84690	24	2.2	24	86	0	81	22	18	20	38	1.93
87426--87823	208	1.9	205	91	4	649	41	23	8	26	1.82
88928--89045	21	5.7	21	84	4	150	22	19	36	21	1.95
88928--89047	42	2.9	41	91	1	186	23	20	35	20	1.96
89402--89497	21	4.6	21	69	7	70	29	37	14	18	1.91
89402--89497	42	2.3	41	73	8	95	29	37	14	18	1.91

Tables:   1

The End!