Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01005490.1 Hibiscus syriacus cultivar Beakdansim tig00012634_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  54751

Tables:   1   

This is table  1  of  1  ( 24 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3883--3960
32
2.4
32
82
0
93
21
10
26
41
1.85
6316--6390
35
2.1
35
92
0
123
44
22
0
33
1.53
7232--7413
90
2.0
90
96
0
337
42
5
13
38
1.67
11134--11266
9
14.6
9
70
14
85
45
2
5
47
1.38
11142--11353
45
4.9
45
83
10
262
45
3
5
45
1.43
11162--11246
16
5.4
16
71
21
54
42
2
5
49
1.40
11275--11341
11
6.0
11
76
10
64
50
5
2
40
1.42
11401--11434
15
2.3
15
94
0
59
41
11
11
35
1.78
11821--12015
91
2.1
90
79
9
232
35
31
5
27
1.79
12291--12455
48
3.5
45
80
11
174
27
24
3
44
1.68
21431--21513
25
3.3
25
79
12
91
54
0
4
40
1.22
21447--21517
23
3.1
23
82
8
83
52
0
5
42
1.25
22472--22547
38
2.0
40
82
10
95
51
0
3
44
1.20
29442--29475
16
2.1
16
100
0
68
23
17
14
44
1.86
37988--38072
35
2.5
33
78
14
91
27
8
10
54
1.63
41642--41736
42
2.3
42
92
0
154
29
28
18
23
1.98
43544--43594
21
2.4
21
83
0
66
15
15
43
25
1.86
47632--47664
4
8.2
4
100
0
66
72
0
0
27
0.85
47789--47846
12
5.1
12
75
12
50
65
3
0
31
1.09
47790--47830
21
2.0
21
90
0
64
65
2
0
31
1.05
48540--48614
33
2.3
33
97
2
143
45
13
25
16
1.83
52525--53270
127
5.9
127
93
3
1215
22
24
20
31
1.98
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
54268--54337
21
3.3
20
90
5
95
18
27
35
18
1.94
54341--54388
21
2.3
21
85
0
60
22
12
39
25
1.89

Tables:   1

The End!