genome.fa.s5491.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01005491.1 Hibiscus syriacus cultivar Beakdansim tig00012635_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  176880

Tables:   1   

This is table  1  of  1  ( 115 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
824--884	27	2.2	28	97	2	115	36	9	0	54	1.34
3277--3323	20	2.3	20	100	0	94	44	14	8	31	1.76
6646--6737	3	31.3	3	75	4	62	53	1	0	45	1.07
6653--6744	20	4.7	20	74	15	84	52	1	0	46	1.07
6646--6744	15	7.1	15	72	16	79	52	1	0	46	1.07
6894--7131	53	4.5	53	87	2	327	21	27	20	30	1.98
7645--7704	22	2.9	20	75	18	68	31	23	21	23	1.98
7638--7699	20	3.1	19	74	17	70	30	25	17	25	1.97
7511--7825	123	2.6	123	89	1	472	30	22	18	28	1.97
14831--14920	47	1.9	46	82	8	110	36	21	12	30	1.90
18191--18282	3	31.3	3	73	4	71	54	1	2	42	1.19
18237--18289	20	2.7	20	90	0	79	54	0	1	43	1.11
22527--22606	2	40.0	2	92	5	135	50	2	0	47	1.14
22756--22782	10	2.7	10	100	0	54	51	0	11	37	1.37
26399--26551	14	11.2	14	65	20	65	24	0	29	45	1.58
26406--26454	25	2.0	25	84	8	64	22	2	28	46	1.63
26437--26540	28	3.7	28	89	0	136	25	0	28	45	1.54
26490--26547	21	2.8	20	75	19	55	22	0	32	44	1.53
29667--29699	12	2.8	12	90	4	50	27	15	24	33	1.95
29691--29735	12	3.8	12	83	11	58	35	24	17	22	1.95
29703--29755	24	2.2	24	86	3	72	30	22	20	26	1.98
31489--31527	15	2.5	15	84	15	53	12	15	0	71	1.14
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32485--32562	13	5.9	13	69	18	54	15	5	3	75	1.12
40131--40177	7	6.7	7	97	0	85	27	10	59	2	1.42
40916--40964	22	2.3	21	80	13	55	63	0	2	34	1.06
41685--41741	29	2.0	29	83	13	73	61	3	0	35	1.13
56704--56732	2	14.5	2	100	0	58	48	0	0	51	1.00
56903--56941	18	2.2	18	100	0	78	41	35	7	15	1.76
59467--59506	21	1.9	21	89	0	62	50	17	2	30	1.59
59414--59605	75	2.6	75	82	3	224	52	11	5	30	1.61
61856--61909	15	3.7	15	72	22	60	22	22	16	38	1.93
61850--61921	29	2.5	29	93	0	126	25	23	16	34	1.95
62431--62471	12	3.2	13	89	10	57	29	12	29	29	1.93
62453--62509	20	2.8	20	100	0	114	31	21	26	21	1.98
63519--63600	41	2.0	41	87	0	119	46	15	14	23	1.83
63716--63768	18	2.9	18	88	0	88	45	11	11	32	1.76
68538--68581	13	3.5	13	90	6	72	18	52	15	13	1.75
68631--68670	19	2.1	19	85	0	53	55	0	0	45	0.99
68673--68723	12	4.3	12	82	5	68	25	47	15	11	1.80
71833--71913	21	3.8	21	73	12	74	23	11	20	44	1.84
71829--71915	44	2.0	44	86	0	120	25	10	20	43	1.83
72284--72352	33	2.1	33	94	0	120	34	11	17	36	1.86
80356--80392	20	1.9	19	89	10	58	24	18	5	51	1.67
81974--82060	3	28.7	3	80	6	95	39	2	0	58	1.11
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
83391--83431	22	2.0	21	86	13	59	46	0	0	53	1.00
83391--83431	21	1.9	22	90	5	66	46	0	0	53	1.00
84083--84133	18	2.9	17	72	18	50	25	0	1	72	0.95
90857--91206	83	4.2	83	94	1	585	27	14	22	36	1.93
92378--92545	74	2.3	74	82	4	187	35	15	19	29	1.93
93885--93939	22	2.5	22	84	0	74	34	12	14	38	1.84
94327--95113	113	7.0	113	98	0	1481	38	14	19	28	1.90
95875--95915	22	2.0	21	86	13	59	46	0	0	53	1.00
95875--95915	21	1.9	22	90	5	66	46	0	0	53	1.00
98974--99038	3	21.7	3	81	12	80	36	0	0	63	0.95
98956--99036	12	6.8	12	76	18	64	35	0	0	64	0.94
98962--99038	15	5.2	15	80	16	81	37	0	0	62	0.96
100382--100436	28	2.0	28	82	7	67	32	5	1	60	1.30
100410--100494	37	2.3	37	82	11	102	45	1	0	52	1.08
101247--101301	26	2.1	26	90	6	85	40	1	0	58	1.09
105843--105871	2	14.5	2	100	0	58	48	0	0	51	1.00
106152--106375	7	32.6	7	90	4	327	85	0	14	0	0.60
106196--106375	1	180.0	1	76	0	171	88	0	11	0	0.52
110820--110977	54	3.0	54	81	10	193	34	15	22	27	1.94
110820--110973	50	3.0	50	84	7	177	34	15	22	27	1.94
111330--111428	22	4.5	22	90	0	153	35	13	14	37	1.84
112107--112338	76	3.1	76	95	1	421	24	20	20	34	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
112336--112872	113	4.8	113	92	1	816	37	14	19	28	1.91
113204--113284	3	26.7	3	87	7	119	37	0	0	62	0.95
114188--114255	34	2.0	34	97	0	127	38	22	17	22	1.93
114663--114717	28	2.0	28	82	7	67	32	5	1	60	1.30
114705--114763	28	2.1	29	83	3	75	49	0	0	50	1.00
117861--117917	3	19.0	3	96	0	105	33	1	0	64	1.04
119261--119302	16	2.7	15	79	17	50	23	2	4	69	1.20
130736--130761	7	3.7	7	100	0	52	88	0	11	0	0.52
131896--132407	83	6.2	83	94	1	879	28	13	22	35	1.92
133235--133788	113	4.9	112	87	4	806	37	13	19	29	1.91
133208--133788	229	2.6	228	90	2	893	36	13	19	29	1.90
134100--134216	3	39.0	3	89	0	180	30	2	0	66	1.05
134620--134644	6	4.2	6	100	0	50	52	16	32	0	1.44
134624--134702	29	2.7	29	77	11	81	54	13	30	1	1.48
135566--135607	16	2.7	15	79	17	50	23	2	4	69	1.20
137090--137209	35	3.3	36	88	6	172	43	19	5	32	1.72
137138--137201	20	3.4	20	66	29	59	45	18	4	31	1.70
140533--140605	18	4.1	18	96	0	128	30	31	16	21	1.95
140541--140591	10	5.5	10	73	17	56	29	33	15	21	1.94
141800--141846	21	2.2	21	92	0	76	27	4	38	29	1.76
146088--146173	24	3.8	23	76	16	90	26	23	23	26	2.00
146672--146700	14	2.1	14	93	6	51	37	10	0	51	1.36
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
151373--151429	24	2.5	22	86	8	71	31	22	17	28	1.97
151373--151470	45	2.2	44	84	12	121	29	22	18	29	1.97
151373--151470	21	4.4	22	78	16	96	29	22	18	29	1.97
154137--154204	18	3.8	18	72	16	70	27	27	16	27	1.97
154158--154312	64	2.4	63	90	5	233	28	23	20	28	1.98
154158--154332	64	2.7	62	83	9	219	27	24	20	28	1.99
158377--158411	15	2.2	17	90	10	56	5	20	5	68	1.31
159789--159829	21	1.9	22	90	5	66	58	12	0	29	1.34
159984--160134	29	5.3	28	70	11	74	52	9	17	20	1.73
161714--161761	3	17.0	3	83	12	66	68	0	0	31	0.90
161715--161764	17	3.2	17	81	16	63	70	0	0	30	0.88
161714--161766	20	2.7	20	88	2	81	67	0	0	32	0.91
162385--162524	64	2.2	64	85	3	183	43	14	10	32	1.78
163031--163111	39	2.1	39	88	0	117	33	9	16	40	1.81
163073--163384	101	3.0	101	73	13	305	38	11	15	35	1.83
163719--163771	4	13.8	4	77	15	58	24	0	24	50	1.49
163713--163748	18	1.9	19	88	5	56	27	0	19	52	1.46
164938--164984	23	2.0	23	84	8	60	4	17	8	70	1.29
168705--168745	22	1.9	22	90	5	66	58	9	0	31	1.31
170627--170661	3	12.0	3	87	6	54	65	0	0	34	0.93
170628--170662	17	2.1	17	94	0	61	68	0	0	31	0.90
174632--174986	133	2.6	133	88	4	491	25	19	30	25	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
175202--175415	87	2.4	86	77	11	227	45	15	11	27	1.80
175363--175498	29	4.8	29	87	5	163	49	17	8	24	1.75
175388--175547	29	5.4	32	80	12	112	43	14	12	30	1.82
175605--175724	62	1.9	62	89	3	188	45	15	10	27	1.80
175887--176024	37	3.8	35	83	8	152	34	13	18	33	1.90

Tables:   1

The End!