genome.fa.s5492.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01005492.1 Hibiscus syriacus cultivar Beakdansim tig00012636_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  61646

Tables:   1   

This is table  1  of  1  ( 52 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
8499--8566	33	2.1	33	86	5	93	27	10	1	60	1.38
9201--9281	33	2.5	33	100	0	162	32	2	24	40	1.68
9218--9274	18	3.3	18	68	22	59	33	3	24	38	1.73
10214--10256	21	2.0	21	95	0	77	16	41	27	13	1.86
10605--10707	34	3.1	34	90	4	149	32	15	29	23	1.95
12990--13034	20	2.4	19	82	10	56	26	28	28	15	1.96
12997--13060	20	3.2	20	86	4	92	18	40	26	14	1.89
12997--13060	21	3.1	21	88	2	94	18	40	26	14	1.89
13409--13512	34	3.1	34	89	5	151	30	16	27	25	1.96
16396--16438	20	2.2	20	91	0	68	37	20	18	23	1.94
16432--16637	20	10.3	20	77	10	149	40	23	14	21	1.89
16435--16633	40	5.0	40	76	11	194	41	23	13	21	1.89
16448--16637	60	3.2	59	78	11	208	41	23	14	21	1.89
16631--16671	19	2.1	20	86	4	57	26	12	14	46	1.80
16791--16841	22	2.3	22	86	0	75	21	43	13	21	1.87
17192--17229	20	2.0	20	89	5	60	13	18	18	50	1.78
19057--19106	21	2.4	21	82	0	64	22	20	28	30	1.98
19415--19485	21	3.4	21	75	7	81	19	35	21	23	1.96
19392--19485	42	2.2	42	85	7	120	21	34	21	23	1.97
20815--20990	66	2.6	65	89	8	257	28	2	15	52	1.57
21024--21092	20	3.5	20	92	6	113	39	23	20	17	1.92
21331--21367	18	2.1	18	94	0	65	16	2	24	56	1.53
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23627--23704	24	3.2	24	94	0	129	38	19	20	21	1.94
23830--23863	12	2.8	12	90	0	50	14	0	26	58	1.36
24458--24497	17	2.5	17	88	8	57	67	0	5	27	1.11
24655--24727	19	3.7	19	83	5	83	31	9	23	35	1.87
24694--24826	20	6.6	19	77	14	76	21	12	25	39	1.89
24987--25059	37	2.0	37	94	0	128	41	19	19	20	1.91
25208--25254	22	2.1	23	84	4	60	46	10	10	31	1.73
25217--25262	22	2.1	22	83	0	56	45	10	8	34	1.70
27293--27359	27	2.4	28	97	2	127	17	13	41	26	1.87
31757--31797	21	2.0	21	85	0	55	19	21	9	48	1.77
32205--32338	52	2.6	52	84	3	155	44	17	11	27	1.82
32193--32338	51	2.8	51	82	1	157	45	15	11	27	1.81
33472--33534	20	3.0	20	90	4	90	41	9	3	46	1.52
39397--39478	38	2.3	35	80	6	83	47	2	1	48	1.22
40105--40132	14	2.0	14	100	0	56	14	14	14	57	1.66
40408--40477	13	5.8	12	73	20	58	11	8	18	61	1.54
40409--40472	10	5.8	10	73	20	56	12	7	18	60	1.55
40409--40499	23	3.9	23	81	8	121	10	9	19	59	1.59
40456--40486	14	2.2	14	94	0	53	3	12	25	58	1.50
40574--40606	16	2.1	16	94	0	57	6	9	24	60	1.49
40836--40895	30	2.1	27	84	9	75	43	0	3	53	1.17
50813--50885	15	4.9	15	68	18	53	39	0	1	58	1.06
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51027--51080	17	3.2	17	72	0	54	31	0	3	64	1.11
52652--52724	21	3.5	21	88	7	112	17	34	27	20	1.95
53238--53335	33	3.0	33	80	10	119	54	4	2	39	1.31
53733--54482	126	5.9	128	93	2	1257	31	20	24	22	1.98
53733--54482	254	3.0	255	94	1	1269	31	20	24	22	1.98
58357--58429	33	2.3	33	93	6	125	16	24	13	45	1.84
59130--59168	20	2.0	20	89	0	60	33	0	2	64	1.08
59287--59314	4	7.0	4	100	0	56	25	0	0	75	0.81

Tables:   1

The End!