genome.fa.s5493.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01005493.1 Hibiscus syriacus cultivar Beakdansim tig00012637_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  62945

Tables:   1   

This is table  1  of  1  ( 67 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2735--2805	35	2.1	34	86	5	99	38	1	16	43	1.57
6399--6567	31	5.5	31	90	2	250	21	18	19	40	1.92
6399--6567	93	1.8	93	92	0	284	21	18	19	40	1.92
7275--7354	21	3.8	21	88	0	106	27	22	25	25	2.00
7377--7427	21	2.4	21	80	3	57	23	19	27	29	1.98
9422--9462	21	2.0	21	95	0	73	17	24	17	41	1.89
9423--9469	21	2.2	21	88	0	67	21	23	19	36	1.95
9459--9583	20	6.3	20	92	1	216	41	20	17	20	1.90
9788--9853	22	3.0	22	90	0	105	27	39	12	21	1.88
10223--10286	20	3.2	20	84	4	67	15	14	25	45	1.83
10255--10292	20	1.9	20	94	0	67	10	10	21	57	1.61
10257--10300	20	2.2	20	83	0	52	13	11	20	54	1.69
12182--12339	20	8.6	20	76	18	137	42	22	18	17	1.89
12185--12319	33	3.8	34	77	9	121	42	22	18	15	1.88
12832--12953	42	2.9	42	78	4	113	24	36	15	23	1.94
14472--14567	33	2.9	34	85	3	131	42	19	22	14	1.88
14578--14630	20	2.7	20	94	2	90	13	20	18	47	1.82
14636--14723	20	4.4	20	88	2	133	17	20	26	36	1.94
17067--17121	24	2.3	24	87	0	74	36	18	18	27	1.94
17951--18004	20	2.7	20	100	0	108	25	18	25	29	1.98
18004--18109	20	5.5	20	82	8	121	22	16	16	45	1.85
18038--18070	16	2.1	16	100	0	66	30	18	6	45	1.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18018--18088	36	2.0	36	88	0	106	25	15	12	46	1.81
18109--18154	21	2.2	21	88	0	65	39	15	26	19	1.91
19438--19530	48	1.9	48	84	4	125	32	18	9	39	1.83
23699--23755	30	1.9	30	85	7	80	49	1	15	33	1.55
27927--27972	18	2.4	18	85	7	56	0	43	8	47	1.34
32914--32964	18	2.7	18	87	9	66	0	49	9	41	1.36
35245--35270	3	8.7	3	100	0	52	30	0	0	69	0.89
35608--35655	23	2.1	23	84	0	60	37	12	16	33	1.86
36038--36089	23	2.3	22	90	6	77	44	19	1	34	1.62
36048--36110	23	2.7	23	90	0	90	38	19	6	36	1.77
36435--36517	39	2.1	39	95	0	148	16	14	20	48	1.81
36778--36814	18	2.1	18	89	0	56	51	10	5	32	1.60
37063--37113	25	2.0	25	92	0	84	39	19	7	33	1.81
37382--37433	23	2.3	22	90	6	77	44	19	1	34	1.62
37392--37454	23	2.7	23	90	0	90	38	19	6	36	1.77
37813--37863	21	2.4	21	90	0	75	37	19	7	35	1.81
38010--38067	27	2.1	27	84	12	75	43	0	5	51	1.24
37902--38227	162	2.0	160	97	2	618	34	7	8	48	1.63
38172--38227	27	2.1	27	83	12	71	41	0	5	53	1.24
38368--38443	21	3.5	22	78	10	75	39	21	5	34	1.76
38585--38649	29	2.2	29	81	10	71	41	0	4	53	1.21
37155--38962	989	1.8	1008	94	5	3289	38	12	8	40	1.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37630--38693	575	1.9	564	90	5	1601	38	11	8	40	1.72
38792--38855	22	2.9	22	88	2	83	39	21	6	32	1.79
41175--41270	48	2.0	46	96	4	174	35	12	35	16	1.87
41465--41959	183	2.7	183	93	4	826	32	16	15	35	1.90
43411--43497	3	29.0	3	77	0	84	24	34	5	35	1.79
43411--43512	18	5.7	18	79	0	87	22	34	6	36	1.81
43419--43509	42	2.2	42	91	0	146	21	35	7	35	1.83
44956--46412	195	7.5	197	93	5	2517	32	16	15	35	1.90
46561--46603	19	2.4	19	88	7	63	58	11	2	27	1.46
48386--48451	33	2.0	33	87	0	96	24	45	1	28	1.62
50740--50785	19	2.4	19	79	13	58	19	17	10	52	1.74
50907--50952	20	2.3	20	85	10	67	17	17	13	52	1.75
50908--50961	20	2.7	20	85	5	56	18	16	14	50	1.79
60661--60776	21	5.7	20	72	9	90	34	25	18	21	1.96
60701--60833	20	6.5	20	71	14	83	36	23	19	21	1.95
60764--60978	20	10.6	20	74	9	132	38	24	18	18	1.93
60764--60980	81	2.7	80	76	9	215	37	24	18	19	1.94
60764--60973	40	5.2	40	82	5	226	38	24	18	18	1.93
60825--60973	41	3.7	41	90	0	230	38	24	18	18	1.93
62540--62607	19	3.9	18	74	20	72	44	19	22	14	1.86
62524--62601	33	2.4	34	93	4	133	44	19	23	12	1.84
62616--62712	33	2.8	33	89	4	131	13	22	19	44	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
62810--62846	14	2.6	14	86	0	56	48	21	0	29	1.50

Tables:   1

The End!