genome.fa.s5494.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01005494.1 Hibiscus syriacus cultivar Beakdansim tig00012638_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  54326

Tables:   1   

This is table  1  of  1  ( 55 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4603--5473	80	10.7	82	77	8	741	29	24	20	25	1.99
4581--5473	163	5.5	163	81	6	1026	29	24	20	25	1.99
5783--5835	25	2.2	25	87	9	76	30	0	0	69	0.88
5775--5844	22	3.1	22	82	11	81	28	1	0	70	0.96
5776--5841	25	2.5	26	79	18	75	30	1	0	68	0.99
5890--5960	31	2.2	31	85	5	88	43	19	9	26	1.82
5917--5989	34	2.2	33	78	7	76	43	19	10	26	1.83
6328--6352	4	6.2	4	100	0	50	24	0	0	76	0.80
7614--7669	20	2.9	19	81	7	69	28	21	7	42	1.79
8818--8883	21	3.2	21	93	2	107	40	21	13	24	1.89
8828--8887	21	2.9	21	97	0	111	45	20	11	23	1.83
9791--9839	16	3.0	16	87	3	62	24	12	18	44	1.84
14952--14992	20	2.0	20	85	0	55	58	17	14	9	1.62
16429--16585	63	2.5	63	87	3	210	38	17	11	32	1.86
16596--16626	2	15.5	2	100	0	62	51	0	0	48	1.00
16727--16751	6	4.2	6	100	0	50	84	0	0	16	0.63
16847--16881	18	1.9	18	88	0	52	8	5	48	37	1.58
16878--16919	18	2.3	18	83	0	57	7	14	40	38	1.73
17547--17619	24	3.0	23	76	7	67	46	16	12	24	1.81
17580--17648	24	2.9	24	73	2	68	43	17	13	26	1.85
18314--18349	12	2.8	13	87	8	56	19	19	44	16	1.87
18293--18322	7	4.3	7	91	0	51	23	26	36	13	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18322--18387	12	5.7	12	79	18	77	21	16	45	16	1.85
18325--18367	20	2.2	20	95	0	77	25	18	41	13	1.88
18293--18398	32	3.3	34	84	11	116	22	19	42	15	1.88
24642--24714	24	3.0	23	76	7	67	46	16	12	24	1.81
25430--25465	18	2.0	18	94	0	63	16	16	47	19	1.83
26353--26688	102	3.2	100	80	12	374	32	4	29	33	1.78
26476--26692	112	2.0	112	89	4	343	35	4	27	32	1.77
27138--27168	16	1.9	16	100	0	62	38	3	6	51	1.44
27147--27335	33	5.8	31	71	14	123	43	4	6	45	1.50
27105--27201	49	2.0	49	89	4	151	40	6	7	46	1.56
27180--27998	7	130.2	6	64	22	85	45	4	6	43	1.50
27180--27998	9	97.6	8	64	22	85	45	4	6	43	1.50
27548--27667	57	2.1	57	81	6	136	42	7	8	41	1.63
27646--27800	18	8.7	18	72	14	117	44	5	7	41	1.57
27589--27758	38	4.6	38	76	17	128	43	6	8	41	1.61
27711--27816	33	3.4	32	78	18	116	49	4	6	39	1.50
27767--27827	25	2.7	24	76	14	67	54	1	6	37	1.37
27694--27885	27	7.0	27	70	19	121	49	4	6	39	1.49
27873--27952	36	2.2	36	97	0	151	42	3	5	48	1.42
27180--27998	2	390.5	2	61	24	85	45	4	6	43	1.50
27968--28104	29	4.8	29	71	8	93	41	5	5	48	1.47
28219--28259	18	2.3	18	95	0	73	46	7	4	41	1.53
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
28349--29260	215	4.2	216	94	0	1578	28	13	8	50	1.70
28349--29260	431	2.1	431	94	0	1585	28	13	8	50	1.70
33448--33547	49	2.0	49	98	0	191	39	20	12	29	1.88
39960--40041	26	3.3	26	88	6	116	62	12	6	19	1.50
39971--40040	23	2.9	24	91	6	106	62	12	2	21	1.42
40087--40143	23	2.5	23	82	0	69	49	14	10	26	1.75
40155--40271	30	3.7	30	68	10	81	60	14	6	17	1.55
46034--46564	82	6.5	82	83	2	539	25	17	19	37	1.93
46151--46564	165	2.5	162	88	2	562	26	17	19	36	1.94
46202--46564	162	2.2	164	89	2	543	26	17	19	36	1.94
47249--47377	45	2.8	45	81	10	147	44	18	15	21	1.87

Tables:   1

The End!