genome.fa.s5495.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01005495.1 Hibiscus syriacus cultivar Beakdansim tig00012643_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  118212

Tables:   1   

This is table  1  of  1  ( 65 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2376--2416	19	2.1	20	82	13	50	53	0	41	4	1.22
3991--4094	50	2.1	51	92	5	176	31	12	12	43	1.80
9119--10119	333	3.0	331	90	3	1507	43	5	8	43	1.56
9957--9998	19	2.3	19	84	12	52	38	2	4	54	1.34
10208--10266	31	1.9	31	86	6	84	22	8	5	64	1.41
15596--15758	64	2.5	64	74	8	152	25	23	19	31	1.98
17077--17191	20	6.3	17	65	28	51	46	6	4	42	1.48
17070--17165	20	4.9	20	70	17	60	43	7	4	44	1.51
17268--17348	2	39.5	2	92	4	135	49	0	2	48	1.14
17510--17701	60	3.2	60	82	1	188	34	14	14	36	1.86
17587--17687	31	3.4	30	69	6	80	27	16	16	38	1.91
21541--21602	32	1.9	32	83	0	79	35	12	11	40	1.80
21577--21638	32	1.9	32	83	6	81	32	9	20	37	1.86
21585--21663	32	2.5	32	80	0	77	29	11	24	35	1.90
28427--28501	38	2.0	38	100	0	150	40	26	10	22	1.87
29578--29616	2	19.5	2	100	0	78	51	0	0	48	1.00
33841--33878	17	2.4	15	91	8	58	28	0	13	57	1.36
34248--34385	60	2.3	59	78	12	138	35	12	16	35	1.86
37116--37190	38	2.0	37	84	5	98	46	4	2	46	1.35
42121--42165	21	2.1	21	87	0	63	35	13	20	31	1.91
42891--42927	18	2.1	18	89	0	56	51	10	5	32	1.60
43131--43195	23	2.8	23	90	0	94	38	18	7	35	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43543--43596	23	2.5	20	75	18	54	42	18	1	37	1.61
43558--43620	23	2.7	23	90	0	90	38	19	6	36	1.77
43973--44026	23	2.5	20	75	18	54	42	18	1	37	1.61
43988--44050	23	2.7	23	90	0	90	38	19	6	36	1.77
44405--44476	23	3.2	22	88	4	90	38	19	5	36	1.75
45265--45327	23	2.7	23	90	0	90	38	19	6	36	1.77
45679--45732	23	2.5	20	75	18	54	42	18	1	37	1.61
45694--45756	23	2.7	23	90	0	90	38	19	6	36	1.77
46101--46155	23	2.5	20	76	18	56	43	18	1	36	1.61
46116--46176	21	2.7	22	82	10	70	37	19	6	36	1.78
46320--46385	30	2.2	29	82	12	73	42	0	4	53	1.21
46525--46578	23	2.5	20	75	18	54	42	18	1	37	1.61
46540--46602	23	2.7	23	90	0	90	38	19	6	36	1.77
43133--47552	427	10.4	431	97	2	8415	38	13	8	40	1.74
46951--47004	23	2.5	20	75	18	54	42	18	1	37	1.61
46966--47028	23	2.7	23	90	0	90	38	19	6	36	1.77
47378--47432	23	2.5	20	76	18	56	43	18	1	36	1.61
47393--47453	21	2.7	22	82	10	70	37	19	6	36	1.78
48944--49605	184	3.6	184	98	0	1261	34	15	15	34	1.89
50975--51061	3	29.0	3	77	0	84	24	34	5	35	1.79
50975--51076	18	5.7	18	79	0	87	22	34	6	36	1.81
50983--51073	42	2.2	42	91	0	146	21	35	7	35	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52538--53958	199	7.1	199	97	0	2677	32	15	14	37	1.88
54040--54084	19	2.4	19	92	0	72	57	8	2	31	1.41
55879--55944	33	2.0	33	87	0	96	24	45	1	28	1.62
58046--58098	24	2.2	24	83	6	63	26	7	13	52	1.66
58243--58289	20	2.4	19	79	10	58	19	17	8	55	1.67
58409--58455	20	2.3	20	89	10	78	17	17	10	55	1.69
58521--58967	228	2.0	226	93	1	761	38	7	8	45	1.61
60186--60262	37	2.1	37	80	9	86	48	2	2	46	1.29
60239--60287	18	2.7	18	75	9	55	51	4	2	42	1.32
65737--65869	60	2.2	60	82	4	160	41	14	12	32	1.82
66450--66522	22	3.4	22	92	3	130	4	4	26	65	1.28
67725--67804	13	5.9	15	67	23	52	48	0	0	51	1.00
69397--69509	57	2.0	57	85	0	154	37	1	8	52	1.43
79819--79850	2	16.0	2	100	0	64	50	0	0	50	1.00
82628--82688	31	1.9	32	83	3	79	52	9	9	27	1.66
94146--94195	15	3.3	15	94	0	91	30	34	22	14	1.93
101012--101061	15	3.3	15	94	0	91	30	34	22	14	1.93
101662--101696	18	1.9	18	94	0	61	22	28	28	20	1.98
105005--105042	19	2.0	19	85	10	51	42	5	13	39	1.66
107531--107614	43	2.0	42	92	2	141	35	9	15	39	1.80
115922--115969	25	1.9	25	91	0	78	43	8	16	31	1.78

Tables:   1

The End!