Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01005497.1 Hibiscus syriacus cultivar Beakdansim tig00012650_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 156378
ACGTcount: A:0.32, C:0.17, G:0.18, T:0.33
Found at i:13182 original size:17 final size:17
Alignment explanation
Indices: 13160--13197 Score: 51
Period size: 17 Copynumber: 2.2 Consensus size: 17
13150 TAGGTTTCTG
13160 CTTCTCTATT-TTCTTTC
1 CTTCTC-ATTATTCTTTC
*
13177 CTTCTCATTATTCTTTG
1 CTTCTCATTATTCTTTC
13194 CTTC
1 CTTC
13198 GACCTTCAAT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
16 3 0.16
17 16 0.84
ACGTcount: A:0.08, C:0.29, G:0.03, T:0.61
Consensus pattern (17 bp):
CTTCTCATTATTCTTTC
Found at i:19662 original size:30 final size:30
Alignment explanation
Indices: 19622--19685 Score: 121
Period size: 30 Copynumber: 2.2 Consensus size: 30
19612 CTAATAATAA
19622 GGTT-AGGATCAACAATCAAAATTTGTTTT
1 GGTTGAGGATCAACAATCAAAATTTGTTTT
19651 GGTTGAGGATCAACAATCAAAATTTGTTTT
1 GGTTGAGGATCAACAATCAAAATTTGTTTT
19681 GGTTG
1 GGTTG
19686 CCCTCCCAAT
Statistics
Matches: 34, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
29 4 0.12
30 30 0.88
ACGTcount: A:0.31, C:0.09, G:0.22, T:0.38
Consensus pattern (30 bp):
GGTTGAGGATCAACAATCAAAATTTGTTTT
Found at i:25205 original size:55 final size:55
Alignment explanation
Indices: 25139--25249 Score: 186
Period size: 55 Copynumber: 2.0 Consensus size: 55
25129 CTTTCATGAT
25139 TACCTGATGTCCAAAAACAACAGAGGCGGTTTGAAGTACGAAATGTAAGAAATTA
1 TACCTGATGTCCAAAAACAACAGAGGCGGTTTGAAGTACGAAATGTAAGAAATTA
** * *
25194 TACCTGATGTCCAAAAACAAGGGGGGCTGTTTGAAGTACGAAATGTAAGAAATTA
1 TACCTGATGTCCAAAAACAACAGAGGCGGTTTGAAGTACGAAATGTAAGAAATTA
25249 T
1 T
25250 CTGCTCTTTC
Statistics
Matches: 52, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
55 52 1.00
ACGTcount: A:0.40, C:0.14, G:0.23, T:0.23
Consensus pattern (55 bp):
TACCTGATGTCCAAAAACAACAGAGGCGGTTTGAAGTACGAAATGTAAGAAATTA
Found at i:39557 original size:42 final size:42
Alignment explanation
Indices: 39497--39577 Score: 126
Period size: 42 Copynumber: 1.9 Consensus size: 42
39487 TTTTCTAAAA
* * *
39497 AAAAATCACATATGAATAGGTTATTATATATATATATATTTC
1 AAAAATCACACATAAATAGATTATTATATATATATATATTTC
*
39539 AAAAATCACACATAAATAGATTGTTATATATATATATAT
1 AAAAATCACACATAAATAGATTATTATATATATATATAT
39578 ATATATATAT
Statistics
Matches: 35, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
42 35 1.00
ACGTcount: A:0.48, C:0.07, G:0.06, T:0.38
Consensus pattern (42 bp):
AAAAATCACACATAAATAGATTATTATATATATATATATTTC
Found at i:39623 original size:2 final size:2
Alignment explanation
Indices: 39563--39615 Score: 106
Period size: 2 Copynumber: 26.5 Consensus size: 2
39553 AATAGATTGT
39563 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
39605 TA TA TA TA TA T
1 TA TA TA TA TA T
39616 TGTATATAAT
Statistics
Matches: 51, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 51 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:51916 original size:21 final size:20
Alignment explanation
Indices: 51882--51939 Score: 55
Period size: 20 Copynumber: 2.8 Consensus size: 20
51872 ATATTAATAT
*
51882 AAAAATATTCATTTTAAGTAA
1 AAAAATAAT-ATTTTAAGTAA
* *
51903 CGAAATTAATATTTCT-AGTAA
1 -AAAAATAATATTT-TAAGTAA
51924 AAAAATAATATTTTAA
1 AAAAATAATATTTTAA
51940 ATAGTACTTT
Statistics
Matches: 29, Mismatches: 5, Indels: 6
0.73 0.12 0.15
Matches are distributed among these distances:
19 1 0.03
20 12 0.41
21 9 0.31
22 7 0.24
ACGTcount: A:0.52, C:0.05, G:0.05, T:0.38
Consensus pattern (20 bp):
AAAAATAATATTTTAAGTAA
Found at i:52811 original size:23 final size:23
Alignment explanation
Indices: 52781--52828 Score: 87
Period size: 23 Copynumber: 2.1 Consensus size: 23
52771 AAGAAACGTG
52781 AGAGCAGAGAAAAACGAGTCACA
1 AGAGCAGAGAAAAACGAGTCACA
*
52804 AGAGCAGAGAAAAACGTGTCACA
1 AGAGCAGAGAAAAACGAGTCACA
52827 AG
1 AG
52829 GAGAGATTTT
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
23 24 1.00
ACGTcount: A:0.50, C:0.17, G:0.27, T:0.06
Consensus pattern (23 bp):
AGAGCAGAGAAAAACGAGTCACA
Found at i:55707 original size:14 final size:14
Alignment explanation
Indices: 55661--55698 Score: 58
Period size: 14 Copynumber: 2.7 Consensus size: 14
55651 CGTTGGGCAT
*
55661 CCGAAGCCATCCGA
1 CCGAGGCCATCCGA
*
55675 CCGAGGGCATCCGA
1 CCGAGGCCATCCGA
55689 CCGAGGCCAT
1 CCGAGGCCAT
55699 TCGAGCGAGC
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
14 21 1.00
ACGTcount: A:0.24, C:0.39, G:0.29, T:0.08
Consensus pattern (14 bp):
CCGAGGCCATCCGA
Found at i:55798 original size:29 final size:29
Alignment explanation
Indices: 55754--55830 Score: 136
Period size: 29 Copynumber: 2.7 Consensus size: 29
55744 GAGGAGCAGG
*
55754 AGGAGTGCATGACGACCTACAAGGTCGCC
1 AGGAGTGCATGGCGACCTACAAGGTCGCC
55783 AGGAGTGCATGGCGACCTACAAGGTCGCC
1 AGGAGTGCATGGCGACCTACAAGGTCGCC
*
55812 CGGAGTGCATGGCGACCTA
1 AGGAGTGCATGGCGACCTA
55831 TGCTGGGAAG
Statistics
Matches: 46, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
29 46 1.00
ACGTcount: A:0.25, C:0.27, G:0.34, T:0.14
Consensus pattern (29 bp):
AGGAGTGCATGGCGACCTACAAGGTCGCC
Found at i:57457 original size:13 final size:13
Alignment explanation
Indices: 57439--57464 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
57429 CCGTATTCCA
57439 CCGCCGGCCACCG
1 CCGCCGGCCACCG
57452 CCGCCGGCCACCG
1 CCGCCGGCCACCG
57465 TAACGGTGGT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.08, C:0.62, G:0.31, T:0.00
Consensus pattern (13 bp):
CCGCCGGCCACCG
Found at i:57747 original size:14 final size:15
Alignment explanation
Indices: 57725--57756 Score: 57
Period size: 14 Copynumber: 2.2 Consensus size: 15
57715 CTTTTCCTCC
57725 TCTGTTTTTTTTCGT
1 TCTGTTTTTTTTCGT
57740 TCTG-TTTTTTTCGT
1 TCTGTTTTTTTTCGT
57754 TCT
1 TCT
57757 CTGCCGTCTG
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 13 0.76
15 4 0.24
ACGTcount: A:0.00, C:0.16, G:0.12, T:0.72
Consensus pattern (15 bp):
TCTGTTTTTTTTCGT
Found at i:58269 original size:3 final size:3
Alignment explanation
Indices: 58261--58361 Score: 139
Period size: 3 Copynumber: 33.0 Consensus size: 3
58251 GTAATATTTA
*
58261 AAT AAT AAT AAT ATAT AAT ATT AAT AAT AAT AAT AAAT AAT AAT AAT
1 AAT AAT AAT AAT A-AT AAT AAT AAT AAT AAT AAT -AAT AAT AAT AAT
* * **
58308 AAT AAT TAT AAT AAT AAT AAT ACT AAT AAT AAT AAT AAT TTT AAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
58356 AAT AAT
1 AAT AAT
58362 TTTAAATGAA
Statistics
Matches: 86, Mismatches: 10, Indels: 4
0.86 0.10 0.04
Matches are distributed among these distances:
3 80 0.93
4 6 0.07
ACGTcount: A:0.61, C:0.01, G:0.00, T:0.38
Consensus pattern (3 bp):
AAT
Found at i:58613 original size:76 final size:76
Alignment explanation
Indices: 58487--59208 Score: 1327
Period size: 76 Copynumber: 9.5 Consensus size: 76
58477 GATGGAAATG
58487 TTTGGAAACATCATGCACTGAAGGACTTACAGATGACCCGAAGGCTTTGAAAACATCAAAAAGCT
1 TTTGGAAACATCATGCACTGAAGGACTTACAGATGACCCGAAGGCTTTGAAAACATCAAAAAGCT
58552 CCCGAAGGCTT
66 CCCGAAGGCTT
58563 TTTGGAAACATCATGCACTGAAGGACTTACAGATGACCCGAAGGCTTTGAAAACATCAAAAAGCT
1 TTTGGAAACATCATGCACTGAAGGACTTACAGATGACCCGAAGGCTTTGAAAACATCAAAAAGCT
58628 CCCGAAGGCTT
66 CCCGAAGGCTT
58639 TTTGGAAACATCATGCACTGAAGGACTTACAGATGACCCGAAGGCTTTGAAAACATCAAAAAGCT
1 TTTGGAAACATCATGCACTGAAGGACTTACAGATGACCCGAAGGCTTTGAAAACATCAAAAAGCT
58704 CCCGAAGGCTT
66 CCCGAAGGCTT
58715 TTTGGAAACATCATGCACTGAAGGACTTACAGATGACCCGAAGGCTTTGAAAACATCAAAAAGCT
1 TTTGGAAACATCATGCACTGAAGGACTTACAGATGACCCGAAGGCTTTGAAAACATCAAAAAGCT
58780 CCCGAAGGCTT
66 CCCGAAGGCTT
* * *
58791 TTTGGAAACATCATGCACTGAAGTACTTACAGATGACCCGAAGGATTTGAAAATATCAAAAAGCT
1 TTTGGAAACATCATGCACTGAAGGACTTACAGATGACCCGAAGGCTTTGAAAACATCAAAAAGCT
*
58856 TCCGAAGGCTTT
66 CCCGAAGGC-TT
* *
58868 TTTGGAAACATCATGCACTGAAGGACTTACAGATGACCCGAAGGATTTGAAAATATCAAAAAGCT
1 TTTGGAAACATCATGCACTGAAGGACTTACAGATGACCCGAAGGCTTTGAAAACATCAAAAAGCT
*
58933 TCCGAAGGCTTT
66 CCCGAAGGC-TT
58945 TTTGGAAACATCATGCACTGAAGGACTTACAGATGACCCGAAGGCTTTGAAAACATCAAAAAGCT
1 TTTGGAAACATCATGCACTGAAGGACTTACAGATGACCCGAAGGCTTTGAAAACATCAAAAAGCT
59010 CCCGAAGGCTT
66 CCCGAAGGCTT
59021 TTTGGAAACATCATGCACTGAAGGACTTACAGATGACCCGAAGGCTTTGAAAACATCAAAAAGCT
1 TTTGGAAACATCATGCACTGAAGGACTTACAGATGACCCGAAGGCTTTGAAAACATCAAAAAGCT
59086 CCCGAAGGCTT
66 CCCGAAGGCTT
* *
59097 TTTGGAAACATCATGCACTGAAGGACTTACAGATGACCCGAAGGATTTGAAAATATCAAAAAGCT
1 TTTGGAAACATCATGCACTGAAGGACTTACAGATGACCCGAAGGCTTTGAAAACATCAAAAAGCT
*
59162 TCCGAAGGCTTT
66 CCCGAAGGC-TT
59174 TTTGGAAACATCATGCACTGAAGGACTTACAGATG
1 TTTGGAAACATCATGCACTGAAGGACTTACAGATG
59209 TGGGAAATAG
Statistics
Matches: 633, Mismatches: 11, Indels: 3
0.98 0.02 0.00
Matches are distributed among these distances:
76 447 0.71
77 186 0.29
ACGTcount: A:0.36, C:0.21, G:0.21, T:0.23
Consensus pattern (76 bp):
TTTGGAAACATCATGCACTGAAGGACTTACAGATGACCCGAAGGCTTTGAAAACATCAAAAAGCT
CCCGAAGGCTT
Found at i:59038 original size:306 final size:305
Alignment explanation
Indices: 58487--59208 Score: 1365
Period size: 306 Copynumber: 2.4 Consensus size: 305
58477 GATGGAAATG
* *
58487 TTTGGAAACATCATGCACTGAAGGACTTACAGATGACCCGAAGGCTTTGAAAACATCAAAAAGCT
1 TTTGGAAACATCATGCACTGAAGGACTTACAGATGACCCGAAGGATTTGAAAATATCAAAAAGCT
* *
58552 CCCGAAGGC-TTTTTGGAAACATCATGCACTGAAGGACTTACAGATGACCCGAAGGCTTTGAAAA
66 TCCGAAGGCTTTTTTGGAAACATCATGCACTGAAGGACTTACAGATGACCCGAAGGATTTGAAAA
58616 CATCAAAAAGCTCCCGAAGGCTTTTTGGAAACATCATGCACTGAAGGACTTACAGATGACCCGAA
131 CATCAAAAAGCTCCCGAAGGCTTTTTGGAAACATCATGCACTGAAGGACTTACAGATGACCCGAA
58681 GGCTTTGAAAACATCAAAAAGCTCCCGAAGGCTTTTTGGAAACATCATGCACTGAAGGACTTACA
196 GGCTTTGAAAACATCAAAAAGCTCCCGAAGGCTTTTTGGAAACATCATGCACTGAAGGACTTACA
58746 GATGACCCGAAGGCTTTGAAAACATCAAAAAGCTCCCGAAGGCTT
261 GATGACCCGAAGGCTTTGAAAACATCAAAAAGCTCCCGAAGGCTT
*
58791 TTTGGAAACATCATGCACTGAAGTACTTACAGATGACCCGAAGGATTTGAAAATATCAAAAAGCT
1 TTTGGAAACATCATGCACTGAAGGACTTACAGATGACCCGAAGGATTTGAAAATATCAAAAAGCT
58856 TCCGAAGGCTTTTTTGGAAACATCATGCACTGAAGGACTTACAGATGACCCGAAGGATTTGAAAA
66 TCCGAAGGCTTTTTTGGAAACATCATGCACTGAAGGACTTACAGATGACCCGAAGGATTTGAAAA
* *
58921 TATCAAAAAGCTTCCGAAGGCTTTTTTGGAAACATCATGCACTGAAGGACTTACAGATGACCCGA
131 CATCAAAAAGCTCCCGAAGGC-TTTTTGGAAACATCATGCACTGAAGGACTTACAGATGACCCGA
58986 AGGCTTTGAAAACATCAAAAAGCTCCCGAAGGCTTTTTGGAAACATCATGCACTGAAGGACTTAC
195 AGGCTTTGAAAACATCAAAAAGCTCCCGAAGGCTTTTTGGAAACATCATGCACTGAAGGACTTAC
59051 AGATGACCCGAAGGCTTTGAAAACATCAAAAAGCTCCCGAAGGCTT
260 AGATGACCCGAAGGCTTTGAAAACATCAAAAAGCTCCCGAAGGCTT
59097 TTTGGAAACATCATGCACTGAAGGACTTACAGATGACCCGAAGGATTTGAAAATATCAAAAAGCT
1 TTTGGAAACATCATGCACTGAAGGACTTACAGATGACCCGAAGGATTTGAAAATATCAAAAAGCT
59162 TCCGAAGGCTTTTTTGGAAACATCATGCACTGAAGGACTTACAGATG
66 TCCGAAGGCTTTTTTGGAAACATCATGCACTGAAGGACTTACAGATG
59209 TGGGAAATAG
Statistics
Matches: 408, Mismatches: 8, Indels: 2
0.98 0.02 0.00
Matches are distributed among these distances:
304 70 0.17
305 73 0.18
306 265 0.65
ACGTcount: A:0.36, C:0.21, G:0.21, T:0.23
Consensus pattern (305 bp):
TTTGGAAACATCATGCACTGAAGGACTTACAGATGACCCGAAGGATTTGAAAATATCAAAAAGCT
TCCGAAGGCTTTTTTGGAAACATCATGCACTGAAGGACTTACAGATGACCCGAAGGATTTGAAAA
CATCAAAAAGCTCCCGAAGGCTTTTTGGAAACATCATGCACTGAAGGACTTACAGATGACCCGAA
GGCTTTGAAAACATCAAAAAGCTCCCGAAGGCTTTTTGGAAACATCATGCACTGAAGGACTTACA
GATGACCCGAAGGCTTTGAAAACATCAAAAAGCTCCCGAAGGCTT
Found at i:59744 original size:22 final size:22
Alignment explanation
Indices: 59719--59773 Score: 92
Period size: 22 Copynumber: 2.5 Consensus size: 22
59709 CATAAAGCTT
59719 TCATCTTTGAAAAGAGAATATA
1 TCATCTTTGAAAAGAGAATATA
* *
59741 TCATCTTTAAAAAGAGAATCTA
1 TCATCTTTGAAAAGAGAATATA
59763 TCATCTTTGAA
1 TCATCTTTGAA
59774 GAGTGTAGAT
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
22 30 1.00
ACGTcount: A:0.42, C:0.13, G:0.11, T:0.35
Consensus pattern (22 bp):
TCATCTTTGAAAAGAGAATATA
Found at i:62759 original size:83 final size:82
Alignment explanation
Indices: 62618--62843 Score: 380
Period size: 83 Copynumber: 2.7 Consensus size: 82
62608 TGTGGTTTCA
* * *
62618 TACCAAACCAGACCAGATAACTCAAATAACACTTCCAGAAGACGCTATGAGCACATTCATCTCTC
1 TACCAAACCAGATCAGATAACTCAAAGAACACTTCCAGAAGATGCTATGAGCACATTCATCT-TC
62683 AAATTCAATGATTGGTTT
65 AAATTCAATGATTGGTTT
* *
62701 TACCAAACCAGATCAGATAACTCAAAGAACACTTCCAGAAGATGCTATGAACAAATTCATCTTCT
1 TACCAAACCAGATCAGATAACTCAAAGAACACTTCCAGAAGATGCTATGAGCACATTCATCTTC-
62766 AAATTCAATGATTGGTTT
65 AAATTCAATGATTGGTTT
*
62784 TGCCAAACCAGATCAGATAACTCAAAGAACACTTCCAGAAGATGCTATGAGCACATTCAT
1 TACCAAACCAGATCAGATAACTCAAAGAACACTTCCAGAAGATGCTATGAGCACATTCAT
62844 TTGTTCCATT
Statistics
Matches: 134, Mismatches: 8, Indels: 2
0.93 0.06 0.01
Matches are distributed among these distances:
82 2 0.01
83 132 0.99
ACGTcount: A:0.39, C:0.23, G:0.13, T:0.25
Consensus pattern (82 bp):
TACCAAACCAGATCAGATAACTCAAAGAACACTTCCAGAAGATGCTATGAGCACATTCATCTTCA
AATTCAATGATTGGTTT
Found at i:69645 original size:18 final size:17
Alignment explanation
Indices: 69597--69647 Score: 50
Period size: 18 Copynumber: 2.9 Consensus size: 17
69587 AAATACTTGC
*
69597 AAATAAAATAAAACATAT
1 AAAT-AAATAAAAAATAT
*
69615 AAAT-ATTATAAAAATAAT
1 AAATAAATA-AAAAAT-AT
69633 AAATAAATAAAAAAT
1 AAATAAATAAAAAAT
69648 TTGAAAGAAA
Statistics
Matches: 27, Mismatches: 3, Indels: 6
0.75 0.08 0.17
Matches are distributed among these distances:
16 3 0.11
17 5 0.19
18 16 0.59
19 3 0.11
ACGTcount: A:0.73, C:0.02, G:0.00, T:0.25
Consensus pattern (17 bp):
AAATAAATAAAAAATAT
Found at i:70463 original size:53 final size:53
Alignment explanation
Indices: 70349--70467 Score: 132
Period size: 53 Copynumber: 2.2 Consensus size: 53
70339 TATAATATAG
* * * * * *
70349 TAAAACAATAATTAAAGTAATGATTGAAAATATATTAAAATAATAAAAATTAAGT
1 TAAAAC-ATAACTAAA-CAATGATTAAAAATATAATAAAATAATAAAAATAAAAT
**
70404 TAAAACATAACTAAACAATGATTAAAAATA-AATAAAATAATAAATGTAAAAT
1 TAAAACATAACTAAACAATGATTAAAAATATAATAAAATAATAAAAATAAAAT
70456 TATAAACATAAC
1 TA-AAACATAAC
70468 CTGAATCATC
Statistics
Matches: 55, Mismatches: 8, Indels: 4
0.82 0.12 0.06
Matches are distributed among these distances:
52 19 0.35
53 22 0.40
54 8 0.15
55 6 0.11
ACGTcount: A:0.62, C:0.05, G:0.05, T:0.28
Consensus pattern (53 bp):
TAAAACATAACTAAACAATGATTAAAAATATAATAAAATAATAAAAATAAAAT
Found at i:71036 original size:13 final size:13
Alignment explanation
Indices: 71018--71043 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
71008 CCGTATTCCA
71018 CCGCCGGCCACCG
1 CCGCCGGCCACCG
71031 CCGCCGGCCACCG
1 CCGCCGGCCACCG
71044 TAACGGTGGT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.08, C:0.62, G:0.31, T:0.00
Consensus pattern (13 bp):
CCGCCGGCCACCG
Found at i:71326 original size:14 final size:15
Alignment explanation
Indices: 71304--71335 Score: 57
Period size: 14 Copynumber: 2.2 Consensus size: 15
71294 CTTTTCCTCC
71304 TCTGTTTTTTTTCGT
1 TCTGTTTTTTTTCGT
71319 TCTG-TTTTTTTCGT
1 TCTGTTTTTTTTCGT
71333 TCT
1 TCT
71336 CTGCCGTCTG
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 13 0.76
15 4 0.24
ACGTcount: A:0.00, C:0.16, G:0.12, T:0.72
Consensus pattern (15 bp):
TCTGTTTTTTTTCGT
Found at i:71847 original size:3 final size:3
Alignment explanation
Indices: 71839--71942 Score: 145
Period size: 3 Copynumber: 34.0 Consensus size: 3
71829 GTAATATTTA
*
71839 AAT AAT AAT AAT ATAT AAT ATT AAT AAT AAT AAT AAAT AAT AAT AAT
1 AAT AAT AAT AAT A-AT AAT AAT AAT AAT AAT AAT -AAT AAT AAT AAT
* * **
71886 AAT AAT TAT AAT AAT AAT AAT ACT AAT AAT AAT AAT AAT AAT TTT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
71934 AAT AAT AAT
1 AAT AAT AAT
71943 TTTAAATGAA
Statistics
Matches: 89, Mismatches: 10, Indels: 4
0.86 0.10 0.04
Matches are distributed among these distances:
3 83 0.93
4 6 0.07
ACGTcount: A:0.62, C:0.01, G:0.00, T:0.38
Consensus pattern (3 bp):
AAT
Found at i:73815 original size:26 final size:27
Alignment explanation
Indices: 73754--73815 Score: 72
Period size: 31 Copynumber: 2.2 Consensus size: 27
73744 GAGTATTGCT
*
73754 GAGCTCGACTCGACTCGAAAACTCTGAAAT
1 GAGCTCGACTCGACTCGAAAACTC---AAC
73784 GAAGCTCGACTCGACTCGAAAACTC-AC
1 G-AGCTCGACTCGACTCGAAAACTCAAC
73811 GAGCT
1 GAGCT
73816 TAAAATTTTT
Statistics
Matches: 30, Mismatches: 1, Indels: 6
0.81 0.03 0.16
Matches are distributed among these distances:
26 4 0.13
27 2 0.07
30 1 0.03
31 23 0.77
ACGTcount: A:0.32, C:0.29, G:0.21, T:0.18
Consensus pattern (27 bp):
GAGCTCGACTCGACTCGAAAACTCAAC
Found at i:77902 original size:17 final size:17
Alignment explanation
Indices: 77861--77896 Score: 63
Period size: 17 Copynumber: 2.1 Consensus size: 17
77851 CATATCAGAT
77861 TAATTACAGTAAATACA
1 TAATTACAGTAAATACA
*
77878 TAATTACAGTAACTACA
1 TAATTACAGTAAATACA
77895 TA
1 TA
77897 CATACACATA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.50, C:0.14, G:0.06, T:0.31
Consensus pattern (17 bp):
TAATTACAGTAAATACA
Found at i:78207 original size:31 final size:31
Alignment explanation
Indices: 78184--78293 Score: 186
Period size: 31 Copynumber: 3.5 Consensus size: 31
78174 CATAGATTCT
* *
78184 GAAGAACCTAGGTAATCAGTCCATATGTCCC
1 GAAGAACATAGGTAAACAGTCCATATGTCCC
78215 GAATG-ACATAGGTAAACAGTCCATATGTCCC
1 GAA-GAACATAGGTAAACAGTCCATATGTCCC
78246 GAAGAACATAGGTAAACAGTCCATATGTCCC
1 GAAGAACATAGGTAAACAGTCCATATGTCCC
78277 GAAGAACATAGGTAAAC
1 GAAGAACATAGGTAAAC
78294 CCTCGACCCT
Statistics
Matches: 75, Mismatches: 2, Indels: 4
0.93 0.02 0.05
Matches are distributed among these distances:
30 1 0.01
31 73 0.97
32 1 0.01
ACGTcount: A:0.38, C:0.22, G:0.20, T:0.20
Consensus pattern (31 bp):
GAAGAACATAGGTAAACAGTCCATATGTCCC
Found at i:79121 original size:21 final size:21
Alignment explanation
Indices: 79097--79141 Score: 63
Period size: 21 Copynumber: 2.1 Consensus size: 21
79087 TGTTGTTCGT
* *
79097 TTGAAGGGGTATCGGTTCCCC
1 TTGAAGGGGTACCGATTCCCC
*
79118 TTGAATGGGTACCGATTCCCC
1 TTGAAGGGGTACCGATTCCCC
79139 TTG
1 TTG
79142 CCCAGAAATC
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.16, C:0.24, G:0.29, T:0.31
Consensus pattern (21 bp):
TTGAAGGGGTACCGATTCCCC
Found at i:82069 original size:17 final size:17
Alignment explanation
Indices: 82028--82063 Score: 63
Period size: 17 Copynumber: 2.1 Consensus size: 17
82018 CATATCAGAT
82028 TAATTACAGTAAATACA
1 TAATTACAGTAAATACA
*
82045 TAATTACAGTAACTACA
1 TAATTACAGTAAATACA
82062 TA
1 TA
82064 CATACACATA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.50, C:0.14, G:0.06, T:0.31
Consensus pattern (17 bp):
TAATTACAGTAAATACA
Found at i:82374 original size:31 final size:31
Alignment explanation
Indices: 82351--82429 Score: 140
Period size: 31 Copynumber: 2.5 Consensus size: 31
82341 CATAGATTCT
* *
82351 GAAGAACCTAGGTAATCAGTCCATATGTCCC
1 GAAGAACATAGGTAAACAGTCCATATGTCCC
82382 GAAGAACATAGGTAAACAGTCCATATGTCCC
1 GAAGAACATAGGTAAACAGTCCATATGTCCC
82413 GAAGAACATAGGTAAAC
1 GAAGAACATAGGTAAAC
82430 CCTCGACCCT
Statistics
Matches: 46, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
31 46 1.00
ACGTcount: A:0.39, C:0.22, G:0.20, T:0.19
Consensus pattern (31 bp):
GAAGAACATAGGTAAACAGTCCATATGTCCC
Found at i:83253 original size:21 final size:21
Alignment explanation
Indices: 83229--83273 Score: 63
Period size: 21 Copynumber: 2.1 Consensus size: 21
83219 TGTTGTTCGT
* *
83229 TTGAAGGGGTATCGGTTCCCC
1 TTGAAGGGGTACCGATTCCCC
*
83250 TTGAATGGGTACCGATTCCCC
1 TTGAAGGGGTACCGATTCCCC
83271 TTG
1 TTG
83274 CCCAGAAATC
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.16, C:0.24, G:0.29, T:0.31
Consensus pattern (21 bp):
TTGAAGGGGTACCGATTCCCC
Found at i:87626 original size:18 final size:18
Alignment explanation
Indices: 87603--87645 Score: 77
Period size: 18 Copynumber: 2.4 Consensus size: 18
87593 AAGAAACATA
87603 ACCTAAACACTATAATAT
1 ACCTAAACACTATAATAT
87621 ACCTAAACACTATAATAT
1 ACCTAAACACTATAATAT
*
87639 GCCTAAA
1 ACCTAAA
87646 TAAGCTAACC
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
18 24 1.00
ACGTcount: A:0.49, C:0.23, G:0.02, T:0.26
Consensus pattern (18 bp):
ACCTAAACACTATAATAT
Found at i:88443 original size:16 final size:16
Alignment explanation
Indices: 88422--88454 Score: 57
Period size: 16 Copynumber: 2.1 Consensus size: 16
88412 AGGCATAATA
88422 ATAATAATAATGAAAT
1 ATAATAATAATGAAAT
*
88438 ATAATAATAATGCAAT
1 ATAATAATAATGAAAT
88454 A
1 A
88455 ATAAGATGAA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.61, C:0.03, G:0.06, T:0.30
Consensus pattern (16 bp):
ATAATAATAATGAAAT
Found at i:88457 original size:19 final size:17
Alignment explanation
Indices: 88416--88449 Score: 52
Period size: 16 Copynumber: 2.0 Consensus size: 17
88406 TTAGTGAGGC
88416 ATAATAATAATAATAATG
1 ATAAT-ATAATAATAATG
88434 A-AATATAATAATAATG
1 ATAATATAATAATAATG
88450 CAATAATAAG
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 12 0.75
17 3 0.19
18 1 0.06
ACGTcount: A:0.62, C:0.00, G:0.06, T:0.32
Consensus pattern (17 bp):
ATAATATAATAATAATG
Found at i:92668 original size:14 final size:15
Alignment explanation
Indices: 92644--92690 Score: 51
Period size: 14 Copynumber: 3.1 Consensus size: 15
92634 TTATAAGGTA
*
92644 ATTTTTGTTATAATT
1 ATTTTTATTATAATT
*
92659 -TTTTTATTATACTT
1 ATTTTTATTATAATT
*
92673 ATTGTTTATTATGATT
1 ATT-TTTATTATAATT
92689 AT
1 AT
92691 ATGAAAAAAT
Statistics
Matches: 26, Mismatches: 4, Indels: 3
0.79 0.12 0.09
Matches are distributed among these distances:
14 12 0.46
15 2 0.08
16 12 0.46
ACGTcount: A:0.26, C:0.02, G:0.06, T:0.66
Consensus pattern (15 bp):
ATTTTTATTATAATT
Found at i:96159 original size:13 final size:13
Alignment explanation
Indices: 96141--96187 Score: 51
Period size: 13 Copynumber: 3.7 Consensus size: 13
96131 AATGATAAAT
*
96141 AATAAAAAATTAC
1 AATAAAAAACTAC
* *
96154 AAT-AAAAAGTCC
1 AATAAAAAACTAC
*
96166 AATAAACAACTAC
1 AATAAAAAACTAC
96179 AATAAAAAA
1 AATAAAAAA
96188 GTACTAAATA
Statistics
Matches: 27, Mismatches: 6, Indels: 2
0.77 0.17 0.06
Matches are distributed among these distances:
12 10 0.37
13 17 0.63
ACGTcount: A:0.68, C:0.13, G:0.02, T:0.17
Consensus pattern (13 bp):
AATAAAAAACTAC
Found at i:96338 original size:21 final size:21
Alignment explanation
Indices: 96309--96349 Score: 73
Period size: 21 Copynumber: 2.0 Consensus size: 21
96299 TTGTGACTCC
*
96309 TCGCTATCATCATCATCGCCA
1 TCGCCATCATCATCATCGCCA
96330 TCGCCATCATCATCATCGCC
1 TCGCCATCATCATCATCGCC
96350 GTTGTTATCG
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.22, C:0.41, G:0.10, T:0.27
Consensus pattern (21 bp):
TCGCCATCATCATCATCGCCA
Found at i:96691 original size:33 final size:33
Alignment explanation
Indices: 96630--96692 Score: 83
Period size: 33 Copynumber: 1.9 Consensus size: 33
96620 GCCTCCAGGA
* * *
96630 GGGGTCATAAAACTCTGTGACGGTGGCGGCAGC
1 GGGGTCATAAAACTCGGTGAAGGCGGCGGCAGC
96663 GGGGTCATAAAAC-CAGGTGAAGGCGGCGGC
1 GGGGTCATAAAACTC-GGTGAAGGCGGCGGC
96693 GGCGACATCT
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
32 1 0.04
33 25 0.96
ACGTcount: A:0.24, C:0.21, G:0.41, T:0.14
Consensus pattern (33 bp):
GGGGTCATAAAACTCGGTGAAGGCGGCGGCAGC
Found at i:98460 original size:9 final size:9
Alignment explanation
Indices: 98428--98479 Score: 56
Period size: 9 Copynumber: 6.1 Consensus size: 9
98418 TCTGCAAAAA
*
98428 AAATTATAT
1 AAATTAAAT
*
98437 AAGTTAAAT
1 AAATTAAAT
98446 --ATTAAAT
1 AAATTAAAT
98453 AAATTAAAT
1 AAATTAAAT
*
98462 -ACTTAAAT
1 AAATTAAAT
98470 AAATTAAAT
1 AAATTAAAT
98479 A
1 A
98480 TAAAATATTA
Statistics
Matches: 35, Mismatches: 5, Indels: 6
0.76 0.11 0.13
Matches are distributed among these distances:
7 6 0.17
8 7 0.20
9 22 0.63
ACGTcount: A:0.60, C:0.02, G:0.02, T:0.37
Consensus pattern (9 bp):
AAATTAAAT
Found at i:98469 original size:17 final size:16
Alignment explanation
Indices: 98430--98486 Score: 78
Period size: 16 Copynumber: 3.5 Consensus size: 16
98420 TGCAAAAAAA
* *
98430 ATTATATAAGTTAAAT
1 ATTAAATAAATTAAAT
98446 ATTAAATAAATTAAAT
1 ATTAAATAAATTAAAT
98462 ACTTAAATAAATTAAAT
1 A-TTAAATAAATTAAAT
*
98479 ATAAAATA
1 ATTAAATA
98487 TTAAAAATAT
Statistics
Matches: 37, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
16 21 0.57
17 16 0.43
ACGTcount: A:0.60, C:0.02, G:0.02, T:0.37
Consensus pattern (16 bp):
ATTAAATAAATTAAAT
Found at i:99427 original size:20 final size:19
Alignment explanation
Indices: 99390--99450 Score: 70
Period size: 20 Copynumber: 3.1 Consensus size: 19
99380 GTATCGATCC
*
99390 AAAATGAT-ATACCAGGTAA
1 AAAATGATAAAACC-GGTAA
99409 AAATATGATAAAACCGGTAA
1 AAA-ATGATAAAACCGGTAA
*
99429 CAAAATGATAAAACCGATAA
1 -AAAATGATAAAACCGGTAA
99449 AA
1 AA
99451 TGTTACCGGA
Statistics
Matches: 37, Mismatches: 2, Indels: 6
0.82 0.04 0.13
Matches are distributed among these distances:
19 5 0.14
20 25 0.68
21 7 0.19
ACGTcount: A:0.57, C:0.11, G:0.13, T:0.18
Consensus pattern (19 bp):
AAAATGATAAAACCGGTAA
Found at i:99551 original size:181 final size:182
Alignment explanation
Indices: 99192--99664 Score: 678
Period size: 181 Copynumber: 2.6 Consensus size: 182
99182 GATCCAAATT
* * * **
99192 AAAAATGTGTCGATCCAAAACGATATAACAGGTAAAACTATGACAAAACCGGTATTGAAATGATA
1 AAAAATGTATCGATCCAAAACGATATAACAGGTAAAAATATGATAAAACCGGTATCAAAATGATA
* * * * * * *
99257 AAATCGGTAAAGTGGTACCGTATACATTTAAAGTGTCGGTACTTTGATATAAGGATCGACACTTC
66 AAACCGGTAAAATGATACCGGATATATTGAAAGTGTCGATACTTTGATATAAGGATCGACACTTC
* * *
99322 GTGAATTTAAAAGAGAAGCAGTTTTAAATCTTATAAAGTGTCGATACTTTTA
131 GTGAATTTAAAAGAGAAGCAGTTTTAAAGCCTATAAAGTGTCGATACTTTAA
* * *
99374 AAAAATGTATCGATCCAAAATGATATACCAGGTAAAAATATGATAAAACCGGTAACAAAATGATA
1 AAAAATGTATCGATCCAAAACGATATAACAGGTAAAAATATGATAAAACCGGTATCAAAATGATA
* * * *
99439 AAACCGATAAAATGTTACCGGATATATTGAAAGTGTCGATACTTT-ATATAAGGATCTACACTTT
66 AAACCGGTAAAATGATACCGGATATATTGAAAGTGTCGATACTTTGATATAAGGATCGACACTTC
** * *
99503 GTGAATTTAAAAGAGAAGCAGTTTTAGCGCCTATAATGTGTTGATACTTTAA
131 GTGAATTTAAAAGAGAAGCAGTTTTAAAGCCTATAAAGTGTCGATACTTTAA
** *
99555 AAAAAAATATCGATCCACAACGATATAACAGGTAAAAATATGATAAAACCGGTATCAAAATGATA
1 AAAAATGTATCGATCCAAAACGATATAACAGGTAAAAATATGATAAAACCGGTATCAAAATGATA
99620 AAACCGGTAAAATGATACCGGATATATTGAAAGTGTCGATACTTT
66 AAACCGGTAAAATGATACCGGATATATTGAAAGTGTCGATACTTT
99665 CGTAAGTTCG
Statistics
Matches: 258, Mismatches: 33, Indels: 1
0.88 0.11 0.00
Matches are distributed among these distances:
181 164 0.64
182 94 0.36
ACGTcount: A:0.42, C:0.13, G:0.17, T:0.28
Consensus pattern (182 bp):
AAAAATGTATCGATCCAAAACGATATAACAGGTAAAAATATGATAAAACCGGTATCAAAATGATA
AAACCGGTAAAATGATACCGGATATATTGAAAGTGTCGATACTTTGATATAAGGATCGACACTTC
GTGAATTTAAAAGAGAAGCAGTTTTAAAGCCTATAAAGTGTCGATACTTTAA
Found at i:99608 original size:20 final size:19
Alignment explanation
Indices: 99585--99631 Score: 67
Period size: 20 Copynumber: 2.4 Consensus size: 19
99575 CGATATAACA
99585 GGTAAAAATATGATAAAACC
1 GGTAAAAA-ATGATAAAACC
*
99605 GGTATCAAAATGATAAAACC
1 GGTA-AAAAATGATAAAACC
99625 GGTAAAA
1 GGTAAAA
99632 TGATACCGGA
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
19 2 0.08
20 19 0.79
21 3 0.12
ACGTcount: A:0.53, C:0.11, G:0.17, T:0.19
Consensus pattern (19 bp):
GGTAAAAAATGATAAAACC
Found at i:99633 original size:17 final size:19
Alignment explanation
Indices: 99594--99636 Score: 63
Period size: 20 Copynumber: 2.3 Consensus size: 19
99584 AGGTAAAAAT
99594 ATGATAAAACCGGTATCAAA
1 ATGATAAAACCGG-ATCAAA
99614 ATGATAAAACCGG-T-AAA
1 ATGATAAAACCGGATCAAA
99631 ATGATA
1 ATGATA
99637 CCGGATATAT
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
17 9 0.39
18 1 0.04
20 13 0.57
ACGTcount: A:0.51, C:0.12, G:0.16, T:0.21
Consensus pattern (19 bp):
ATGATAAAACCGGATCAAA
Found at i:100775 original size:21 final size:21
Alignment explanation
Indices: 100749--100813 Score: 94
Period size: 21 Copynumber: 3.1 Consensus size: 21
100739 AAGACAATCA
*
100749 AGAGTCGAAGAGAAACTTGAT
1 AGAGTCGAAGAGAAACTTGAG
100770 AGAGTCGAAGAGAAACTTGAG
1 AGAGTCGAAGAGAAACTTGAG
* * *
100791 AGAGTTGAAGATACACTTGAG
1 AGAGTCGAAGAGAAACTTGAG
100812 AG
1 AG
100814 GCATAAGGGG
Statistics
Matches: 40, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
21 40 1.00
ACGTcount: A:0.42, C:0.09, G:0.31, T:0.18
Consensus pattern (21 bp):
AGAGTCGAAGAGAAACTTGAG
Found at i:100889 original size:33 final size:33
Alignment explanation
Indices: 100847--100912 Score: 105
Period size: 33 Copynumber: 2.0 Consensus size: 33
100837 AAATAGATGG
*
100847 AGTGGTGAAAGAAGTAGAGGTGTTGAGGGGTGA
1 AGTGGTGAAAGAAGTAGAGGTGTTAAGGGGTGA
* *
100880 AGTGGTGAAAGAAGTTGGGGTGTTAAGGGGTGA
1 AGTGGTGAAAGAAGTAGAGGTGTTAAGGGGTGA
100913 TATTAAGATG
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
33 30 1.00
ACGTcount: A:0.29, C:0.00, G:0.48, T:0.23
Consensus pattern (33 bp):
AGTGGTGAAAGAAGTAGAGGTGTTAAGGGGTGA
Found at i:102726 original size:19 final size:19
Alignment explanation
Indices: 102702--102750 Score: 89
Period size: 19 Copynumber: 2.6 Consensus size: 19
102692 AATGTAGGGT
102702 TAATTTTGTATAAGATTTA
1 TAATTTTGTATAAGATTTA
*
102721 TAATTTTGTATACGATTTA
1 TAATTTTGTATAAGATTTA
102740 TAATTTTGTAT
1 TAATTTTGTAT
102751 GTGAATATAA
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
19 29 1.00
ACGTcount: A:0.33, C:0.02, G:0.10, T:0.55
Consensus pattern (19 bp):
TAATTTTGTATAAGATTTA
Found at i:103208 original size:201 final size:200
Alignment explanation
Indices: 102863--103805 Score: 1661
Period size: 201 Copynumber: 4.7 Consensus size: 200
102853 AATTTACAAT
* *
102863 ATGGCAAACAGGGTGCAACCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAAATAT
1 ATGGCAAACAGGGTGCAACCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCATAAACAT
* * *
102928 CGAAACCCAAAAGTATAATGTAATAGGTAATTTTTCAATCTAATCGGTGCAAGTATACCGGTTTT
66 CGAAAACCAAAAGTATAATGTAATAGGTAATTTTTCAATCTAACCGGTACAAGTATACCGGTTTT
* * * *
102993 ATGAGAGAATAGGTCTAAATAATGTATCGACACTTTTTTTAGTTTGTGTCGATATTTCTGGTCCA
131 ATGAGAGAATAGGTCTTAATAATGTGTCGACAC-TTTTGTAGTTTGTGTCGATATTTTTGGTCCA
103058 GAATGA
195 GAATGA
* * * *
103064 ATGGCAAACAGGCTGTAACCATAAATTGTCAATCCATATATAAAAAGTGTCGATCCCATAAACAT
1 ATGGCAAACAGGGTGCAACCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCATAAACAT
103129 CGAAAACCAAAAGTATAATGTAATAGGTAATTTTTCAATCTAACCGGTACAAGTATACCGGTTTT
66 CGAAAACCAAAAGTATAATGTAATAGGTAATTTTTCAATCTAACCGGTACAAGTATACCGGTTTT
103194 ATGAGAGAATAGGTCTTAATAATGTGTCGACACTTTTGTAGTTTGTGTCGATATTTTTGGTCCAG
131 ATGAGAGAATAGGTCTTAATAATGTGTCGACACTTTTGTAGTTTGTGTCGATATTTTTGGTCCAG
103259 AATGA
196 AATGA
*
103264 ATGGCAAACAGGGTGCAACCATAAAGTGTCGATCCATATATAAAACGTGTCGATCCCATAAACAT
1 ATGGCAAACAGGGTGCAACCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCATAAACAT
*
103329 CGAAAACCAAAAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAAGTATACCGGTTTT
66 CGAAAACCAAAAGTATAATGTAATAGGTAATTTTTCAATCTAACCGGTACAAGTATACCGG-TTT
*
103394 TATGAGAGAATAGGTCTTACTAATGTGTCGACACTTTTGTAGTTTGTGTCGATATTTTTGGTCCA
130 TATGAGAGAATAGGTCTTAATAATGTGTCGACACTTTTGTAGTTTGTGTCGATATTTTTGGTCCA
103459 GAATGA
195 GAATGA
*
103465 ATGGCAAATAGGGTGCAACCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCATAAACAT
1 ATGGCAAACAGGGTGCAACCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCATAAACAT
*
103530 CGAAAACCAAAAGTATAATGTAATAGGTAATTTTTCAATCTAACTGGTACAAGTATACCGGTTTT
66 CGAAAACCAAAAGTATAATGTAATAGGTAATTTTTCAATCTAACCGGTACAAGTATACCGG-TTT
*
103595 TATGAGAGAATAGGTCTTACTAATGTGTCGACACTTTTGTAGTTTGTGTCGATATTTTTGGTCCA
130 TATGAGAGAATAGGTCTTAATAATGTGTCGACACTTTTGTAGTTTGTGTCGATATTTTTGGTCCA
103660 GAATGA
195 GAATGA
* *
103666 ATGGCAAACAAGGTGCAACCATAAAGTGTCGATCCATATATAAAACGTGTCGATCCCATAAACAT
1 ATGGCAAACAGGGTGCAACCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCATAAACAT
*
103731 CGAAAACCAAAAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAAGTATACCGGTTTT
66 CGAAAACCAAAAGTATAATGTAATAGGTAATTTTTCAATCTAACCGGTACAAGTATACCGGTTTT
103796 ATGAGAGAAT
131 ATGAGAGAAT
103806 TGTTATATAA
Statistics
Matches: 712, Mismatches: 29, Indels: 3
0.96 0.04 0.00
Matches are distributed among these distances:
200 169 0.24
201 543 0.76
ACGTcount: A:0.36, C:0.15, G:0.18, T:0.31
Consensus pattern (200 bp):
ATGGCAAACAGGGTGCAACCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCATAAACAT
CGAAAACCAAAAGTATAATGTAATAGGTAATTTTTCAATCTAACCGGTACAAGTATACCGGTTTT
ATGAGAGAATAGGTCTTAATAATGTGTCGACACTTTTGTAGTTTGTGTCGATATTTTTGGTCCAG
AATGA
Found at i:103798 original size:401 final size:401
Alignment explanation
Indices: 102863--103805 Score: 1681
Period size: 401 Copynumber: 2.3 Consensus size: 401
102853 AATTTACAAT
* * *
102863 ATGGCAAACAGGGTGCAACCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAAATAT
1 ATGGCAAACAGGGTGCAACCATAAAGTGTCGATCCATATATAAAACGTGTCGATCCCATAAACAT
* * * *
102928 CGAAACCCAAAAGTATAATGTAATAGGTAATTTTTCAATCTAATCGGTGCAAGTATACCGGTTTT
66 CGAAAACCAAAAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAAGTATACCGGTTTT
*
102993 ATGAGAGAATAGGTCTAAATAATGTATCGACACTTTTTTTAGTTTGTGTCGATATTTCTGGTCCA
131 ATGAGAGAATAGGTCTAAATAATGTATCGACACTTTTTGTAGTTTGTGTCGATATTTCTGGTCCA
* *
103058 GAATGAATGGCAAACAGGCTGTAACCATAAATTGTCAATCCATATATAAAAAGTGTCGATCCCAT
196 GAATGAATGGCAAACAGGCTGCAACCATAAAGTGTCAATCCATATATAAAAAGTGTCGATCCCAT
103123 AAACATCGAAAACCAAAAGTATAATGTAATAGGTAATTTTTCAATCTAACCGGTACAAGTATACC
261 AAACATCGAAAACCAAAAGTATAATGTAATAGGTAATTTTTCAATCTAACCGGTACAAGTATACC
103188 GGTTTTATGAGAGAATAGGTCTTAATAATGTGTCGACACTTTTGTAGTTTGTGTCGATATTTTTG
326 GGTTTTATGAGAGAATAGGTCTTAATAATGTGTCGACACTTTTGTAGTTTGTGTCGATATTTTTG
103253 GTCCAGAATGA
391 GTCCAGAATGA
103264 ATGGCAAACAGGGTGCAACCATAAAGTGTCGATCCATATATAAAACGTGTCGATCCCATAAACAT
1 ATGGCAAACAGGGTGCAACCATAAAGTGTCGATCCATATATAAAACGTGTCGATCCCATAAACAT
103329 CGAAAACCAAAAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAAGTATACCGGTTTT
66 CGAAAACCAAAAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAAGTATACCGG-TTT
* * * *
103394 TATGAGAGAATAGGTCTTACTAATGTGTCGACAC-TTTTGTAGTTTGTGTCGATATTTTTGGTCC
130 TATGAGAGAATAGGTCTAAATAATGTATCGACACTTTTTGTAGTTTGTGTCGATATTTCTGGTCC
* * *
103458 AGAATGAATGGCAAATAGGGTGCAACCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCA
195 AGAATGAATGGCAAACAGGCTGCAACCATAAAGTGTCAATCCATATATAAAAAGTGTCGATCCCA
*
103523 TAAACATCGAAAACCAAAAGTATAATGTAATAGGTAATTTTTCAATCTAACTGGTACAAGTATAC
260 TAAACATCGAAAACCAAAAGTATAATGTAATAGGTAATTTTTCAATCTAACCGGTACAAGTATAC
*
103588 CGGTTTTTATGAGAGAATAGGTCTTACTAATGTGTCGACACTTTTGTAGTTTGTGTCGATATTTT
325 CGG-TTTTATGAGAGAATAGGTCTTAATAATGTGTCGACACTTTTGTAGTTTGTGTCGATATTTT
103653 TGGTCCAGAATGA
389 TGGTCCAGAATGA
*
103666 ATGGCAAACAAGGTGCAACCATAAAGTGTCGATCCATATATAAAACGTGTCGATCCCATAAACAT
1 ATGGCAAACAGGGTGCAACCATAAAGTGTCGATCCATATATAAAACGTGTCGATCCCATAAACAT
103731 CGAAAACCAAAAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAAGTATACCGGTTTT
66 CGAAAACCAAAAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAAGTATACCGGTTTT
103796 ATGAGAGAAT
131 ATGAGAGAAT
103806 TGTTATATAA
Statistics
Matches: 520, Mismatches: 20, Indels: 4
0.96 0.04 0.01
Matches are distributed among these distances:
401 288 0.55
402 232 0.45
ACGTcount: A:0.36, C:0.15, G:0.18, T:0.31
Consensus pattern (401 bp):
ATGGCAAACAGGGTGCAACCATAAAGTGTCGATCCATATATAAAACGTGTCGATCCCATAAACAT
CGAAAACCAAAAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAAGTATACCGGTTTT
ATGAGAGAATAGGTCTAAATAATGTATCGACACTTTTTGTAGTTTGTGTCGATATTTCTGGTCCA
GAATGAATGGCAAACAGGCTGCAACCATAAAGTGTCAATCCATATATAAAAAGTGTCGATCCCAT
AAACATCGAAAACCAAAAGTATAATGTAATAGGTAATTTTTCAATCTAACCGGTACAAGTATACC
GGTTTTATGAGAGAATAGGTCTTAATAATGTGTCGACACTTTTGTAGTTTGTGTCGATATTTTTG
GTCCAGAATGA
Found at i:105353 original size:12 final size:12
Alignment explanation
Indices: 105331--105406 Score: 116
Period size: 12 Copynumber: 6.3 Consensus size: 12
105321 CGAGCGGTCA
*
105331 ATGAAGATGAAG
1 ATGACGATGAAG
*
105343 CTGACGATGAAG
1 ATGACGATGAAG
105355 ATGACGATGAAG
1 ATGACGATGAAG
* *
105367 ATGATGATGATG
1 ATGACGATGAAG
105379 ATGACGATGAAG
1 ATGACGATGAAG
105391 ATGACGATGAAG
1 ATGACGATGAAG
105403 ATGA
1 ATGA
105407 TGACGATGAT
Statistics
Matches: 57, Mismatches: 7, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
12 57 1.00
ACGTcount: A:0.41, C:0.07, G:0.33, T:0.20
Consensus pattern (12 bp):
ATGACGATGAAG
Found at i:105384 original size:36 final size:36
Alignment explanation
Indices: 105344--105418 Score: 141
Period size: 36 Copynumber: 2.1 Consensus size: 36
105334 AAGATGAAGC
*
105344 TGACGATGAAGATGACGATGAAGATGATGATGATGA
1 TGACGATGAAGATGACGATGAAGATGATGACGATGA
105380 TGACGATGAAGATGACGATGAAGATGATGACGATGA
1 TGACGATGAAGATGACGATGAAGATGATGACGATGA
105416 TGA
1 TGA
105419 TGATAATGAT
Statistics
Matches: 38, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
36 38 1.00
ACGTcount: A:0.39, C:0.07, G:0.33, T:0.21
Consensus pattern (36 bp):
TGACGATGAAGATGACGATGAAGATGATGACGATGA
Found at i:105415 original size:6 final size:6
Alignment explanation
Indices: 105331--105406 Score: 89
Period size: 6 Copynumber: 12.7 Consensus size: 6
105321 CGAGCGGTCA
* * * * *
105331 ATGAAG ATGAAG CTGACG ATGAAG ATGACG ATGAAG ATGATG ATGATG
1 ATGAAG ATGAAG ATGAAG ATGAAG ATGAAG ATGAAG ATGAAG ATGAAG
* *
105379 ATGACG ATGAAG ATGACG ATGAAG ATGA
1 ATGAAG ATGAAG ATGAAG ATGAAG ATGA
105407 TGACGATGAT
Statistics
Matches: 59, Mismatches: 11, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
6 59 1.00
ACGTcount: A:0.41, C:0.07, G:0.33, T:0.20
Consensus pattern (6 bp):
ATGAAG
Found at i:105420 original size:6 final size:6
Alignment explanation
Indices: 105348--105434 Score: 93
Period size: 6 Copynumber: 14.5 Consensus size: 6
105338 TGAAGCTGAC
* * * * * *
105348 GATGAA GATGAC GATGAA GATGAT GATGAT GATGAC GATGAA GATGAC
1 GATGAT GATGAT GATGAT GATGAT GATGAT GATGAT GATGAT GATGAT
* * *
105396 GATGAA GATGAT GACGAT GATGAT GATAAT GATGAT GAT
1 GATGAT GATGAT GATGAT GATGAT GATGAT GATGAT GAT
105435 CCAAACAAGT
Statistics
Matches: 69, Mismatches: 12, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
6 69 1.00
ACGTcount: A:0.39, C:0.05, G:0.32, T:0.24
Consensus pattern (6 bp):
GATGAT
Found at i:106950 original size:183 final size:183
Alignment explanation
Indices: 106642--107214 Score: 1110
Period size: 183 Copynumber: 3.1 Consensus size: 183
106632 CAAAGTTTTC
*
106642 ACACTTTTTAATATTGTGTCTGTACTTTATGTCCAGATTGGAAGAAAAATGTGTCGATACCTTGT
1 ACACTTTTTAATATTGTGTCGGTACTTTATGTCCAGATTGGAAGAAAAATGTGTCGATACCTTGT
*
106707 CAAAAAGTGTCGACATTTATACATCGGAACCCAAAATTATAATGTAATAGATAATTTTGTAATAT
66 CAAAAAGTGTCGACATTTATACATCGGAACCCAGAATTATAATGTAATAGATAATTTTGTAATAT
*
106772 AACCGGTATAAATATATCGGTTTTATGAGCGAATAGGTCTACAACCTATATCG
131 AACCGGTATAAATATACCGGTTTTATGAGCGAATAGGTCTACAACCTATATCG
*
106825 ACACTTTTTAATATTGTGTCGGTACTTTATATCCAGATTGGAAGAAAAATGTGTCGATACCTTGT
1 ACACTTTTTAATATTGTGTCGGTACTTTATGTCCAGATTGGAAGAAAAATGTGTCGATACCTTGT
106890 CAAAAAGTGTCGACATTTATACATCGGAACCCAGAATTATAATGTAATAGATAATTTTGTAATAT
66 CAAAAAGTGTCGACATTTATACATCGGAACCCAGAATTATAATGTAATAGATAATTTTGTAATAT
106955 AACCGGTATAAATATACCGGTTTTATGAGCGAATAGGTCTACAACCTATATCG
131 AACCGGTATAAATATACCGGTTTTATGAGCGAATAGGTCTACAACCTATATCG
107008 ACACTTTTTAATATTGTGTCGGTACTTTATGTCCAGATTGGAAGAAAAATGTGTCGATACCTTGT
1 ACACTTTTTAATATTGTGTCGGTACTTTATGTCCAGATTGGAAGAAAAATGTGTCGATACCTTGT
107073 CAAAAAGTGTCGACATTTATACATCGGAACCCAGAATTATAATGTAATAGATAATTTTGTAATAT
66 CAAAAAGTGTCGACATTTATACATCGGAACCCAGAATTATAATGTAATAGATAATTTTGTAATAT
107138 AACCGGTATAAATATACCGGTTTTATGAGCGAATAGGTCTACAACCTATATCG
131 AACCGGTATAAATATACCGGTTTTATGAGCGAATAGGTCTACAACCTATATCG
107191 ACACTTTTTAATATTGTGTCGGTA
1 ACACTTTTTAATATTGTGTCGGTA
107215 ATTTTAAGTA
Statistics
Matches: 385, Mismatches: 5, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
183 385 1.00
ACGTcount: A:0.34, C:0.14, G:0.17, T:0.34
Consensus pattern (183 bp):
ACACTTTTTAATATTGTGTCGGTACTTTATGTCCAGATTGGAAGAAAAATGTGTCGATACCTTGT
CAAAAAGTGTCGACATTTATACATCGGAACCCAGAATTATAATGTAATAGATAATTTTGTAATAT
AACCGGTATAAATATACCGGTTTTATGAGCGAATAGGTCTACAACCTATATCG
Found at i:110096 original size:23 final size:23
Alignment explanation
Indices: 110061--110133 Score: 92
Period size: 23 Copynumber: 3.2 Consensus size: 23
110051 ATAGGTAAAA
* * *
110061 ATATGATGGAATATGTAGCGCTT
1 ATATAATGTAATAGGTAGCGCTT
* *
110084 ATATAATGTAATAGGTAACGTTT
1 ATATAATGTAATAGGTAGCGCTT
*
110107 ATATAATGTAATAGGTAGTGCTT
1 ATATAATGTAATAGGTAGCGCTT
110130 ATAT
1 ATAT
110134 TGTAAAGTAT
Statistics
Matches: 42, Mismatches: 8, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
23 42 1.00
ACGTcount: A:0.36, C:0.05, G:0.21, T:0.38
Consensus pattern (23 bp):
ATATAATGTAATAGGTAGCGCTT
Found at i:110512 original size:21 final size:22
Alignment explanation
Indices: 110488--110531 Score: 63
Period size: 22 Copynumber: 2.0 Consensus size: 22
110478 ATTACATAAC
* *
110488 TTTA-AAAAAGTATCGATCCTT
1 TTTATAAAAAGTATAGATACTT
110509 TTTATAAAAAGTATAGATACTT
1 TTTATAAAAAGTATAGATACTT
110531 T
1 T
110532 CAATATAATA
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
21 4 0.20
22 16 0.80
ACGTcount: A:0.41, C:0.09, G:0.09, T:0.41
Consensus pattern (22 bp):
TTTATAAAAAGTATAGATACTT
Found at i:110580 original size:23 final size:22
Alignment explanation
Indices: 110549--110621 Score: 92
Period size: 23 Copynumber: 3.2 Consensus size: 22
110539 ATAGGTAAAA
*
110549 ATATGATGTAATATGTAGCGCTT
1 ATATAATGTAATA-GTAGCGCTT
*
110572 ATATAATGTAATAGATAGCGTTT
1 ATATAATGTAATAG-TAGCGCTT
*
110595 ATATAATGTAATAAGTAGTGCTT
1 ATATAATGTAAT-AGTAGCGCTT
110618 ATAT
1 ATAT
110622 TGTAAAATAT
Statistics
Matches: 44, Mismatches: 4, Indels: 4
0.85 0.08 0.08
Matches are distributed among these distances:
22 1 0.02
23 41 0.93
24 2 0.05
ACGTcount: A:0.37, C:0.05, G:0.18, T:0.40
Consensus pattern (22 bp):
ATATAATGTAATAGTAGCGCTT
Found at i:110730 original size:488 final size:488
Alignment explanation
Indices: 109715--112489 Score: 4917
Period size: 488 Copynumber: 5.7 Consensus size: 488
109705 AGGTATGTAC
109715 ATCTTTTGAGTGAGTTTTAAGATATTAATTTAGTAATTATAGGCGTCTAATGATTTATTTTTTAC
1 ATCTTTTGAGTGAGTTTTAAGATATTAATTTAGTAATTATAGGCGTCTAATGATTTATTTTTTAC
109780 GTTACGGTATATATTATTATTAAATTAAAAACAATAAACATATATATTACATATTTATTATTATC
66 GTTACGGTATATATTATTATTAAATTAAAAACAATAAACATATATATTACATATTTATTATTATC
109845 TTTGGTTAATATTGTTAAATTTAAATACTAAATAATATTTTATAAAATATCAAAACAATCAAATA
131 TTTGGTTAATATTGTTAAATTTAAATACTAAATAATATTTTATAAAATATCAAAACAATCAAATA
*
109910 ATTTTTTGTGTAAATGAAATTATTATATTAATATTGTAGGTGGAAAACATGAAACACTATTAAAA
196 ATTTTTTGTGTAAATGAAATTATTAAATTAATATTGTAGGTGGAAAACATGAAACACTATT-AAA
* *
109975 AAAATTGAAACATAAATTACATAAATTTAAAAAAGTATCGATCATTTTTATAAAAAGTATGGAAA
260 AAAATTGAAACATAAATTACATAACTTTAAAAAAGTATCGATCATTTTTATAAAAAGTATGGACA
* * *
110040 CTTTCAATATAATAGGTAAAAATATGATGGAATATGTAGCGCTTATATAATGTAATAGGTAACGT
325 CTTTCAATATAATAGGTAAAAATATGATGTAATAGGTAGCGCTTATATAATGTAATAGGTAGCGT
**
110105 TTATATAATGTAATAGGTAGTGCTTATATTGTAAAGTATCTATTATTTTTATAAAAGTGTCCATA
390 TTATATAATGTAATAGGTAGTGCTTATATTGTAAAGTATCTATCCTTTTTATAAAAGTGTCCATA
110170 CTTTTTTCACTGTGGAAAACATTAATTTAAGGTT
455 CTTTTTTCACTGTGGAAAACATTAATTTAAGGTT
*
110204 ATCTTTTGAGTGAGTTTTAAGATATTAATTTAGTAATTATAGGTGTCTAATGATTTATTTTTTAC
1 ATCTTTTGAGTGAGTTTTAAGATATTAATTTAGTAATTATAGGCGTCTAATGATTTATTTTTTAC
*
110269 GTTACGGTATATATTATTATTAAATTAAAAACAATAAACATATATATTATATATTTATTATTATC
66 GTTACGGTATATATTATTATTAAATTAAAAACAATAAACATATATATTACATATTTATTATTATC
110334 TTTGGTTAATATTGTTAAATTTAAATACTAAATAATATTTTATAAAATATCAAAACAATCAAATA
131 TTTGGTTAATATTGTTAAATTTAAATACTAAATAATATTTTATAAAATATCAAAACAATCAAATA
* *
110399 ATTTTTTGTGTAAATGAAATTATTAAATTAACATTATAGGTGGAAAACATGAAACACTATTAAAA
196 ATTTTTTGTGTAAATGAAATTATTAAATTAATATTGTAGGTGGAAAACATGAAACACTATTAAAA
* * * *
110464 AAATTGAAAGATAAATTACATAACTTTAAAAAAGTATCGATCCTTTTTATAAAAAGTATAGATAC
261 AAATTGAAACATAAATTACATAACTTTAAAAAAGTATCGATCATTTTTATAAAAAGTATGGACAC
* *
110529 TTTCAATATAATAGGTAAAAATATGATGTAATATGTAGCGCTTATATAATGTAATAGATAGCGTT
326 TTTCAATATAATAGGTAAAAATATGATGTAATAGGTAGCGCTTATATAATGTAATAGGTAGCGTT
* * *
110594 TATATAATGTAATAAGTAGTGCTTATATTGTAAAATATCTATCCTTTATATAAAAGTGTCCATAC
391 TATATAATGTAATAGGTAGTGCTTATATTGTAAAGTATCTATCCTTTTTATAAAAGTGTCCATAC
*
110659 TTTTTTCAATGTGGAAAACATTAATTTAAGGTT
456 TTTTTTCACTGTGGAAAACATTAATTTAAGGTT
110692 ATCTTTTGAGTGAGTTTTAAGATATTAATTTAGTAATTATAGGCGTCTAATGATTTATTTTTTAC
1 ATCTTTTGAGTGAGTTTTAAGATATTAATTTAGTAATTATAGGCGTCTAATGATTTATTTTTTAC
* *
110757 GTTATGGTATATATTATTATTAAATTAAAAATAATAAACATATATATTACATATTTATTATTATC
66 GTTACGGTATATATTATTATTAAATTAAAAACAATAAACATATATATTACATATTTATTATTATC
* *
110822 TTTGGTTATTATTGTTAAATTTAAATACTAAATAATATTTTATAAAATATTAAAACAATCAAATA
131 TTTGGTTAATATTGTTAAATTTAAATACTAAATAATATTTTATAAAATATCAAAACAATCAAATA
110887 ATTTTTTGTGTAAATGAAATTATTAAATTAATATTGTAGGTGGAAAACATGAAACACTATTAAAA
196 ATTTTTTGTGTAAATGAAATTATTAAATTAATATTGTAGGTGGAAAACATGAAACACTATT-AAA
*
110952 AAAATTGAAAC--AAATTACATAACTTTAAAAAAGTATCGATCTTTTTTATAAAAAGTATGGACA
260 AAAATTGAAACATAAATTACATAACTTTAAAAAAGTATCGATCATTTTTATAAAAAGTATGGACA
*
111015 CTTTCAATATAATAGGTAAAAATATGATGGAATAGGTAGCGCTTATATAATGTAATAGGTAGCGT
325 CTTTCAATATAATAGGTAAAAATATGATGTAATAGGTAGCGCTTATATAATGTAATAGGTAGCGT
111080 TTATATAATGTAATAGGTAGTGCTTATATTGTAAAGTATCTATCCTTTTTATAAAAGTGTCCATA
390 TTATATAATGTAATAGGTAGTGCTTATATTGTAAAGTATCTATCCTTTTTATAAAAGTGTCCATA
111145 CTTTTTTTCACTGTGGAAAACATTAATTTAAGGTT
455 C-TTTTTTCACTGTGGAAAACATTAATTTAAGGTT
111180 ATCTTTTGAGTGAGTTTTAAGATATTAATTTAGTAATTATAGGCGTCTAATGATTTATTTTTTAC
1 ATCTTTTGAGTGAGTTTTAAGATATTAATTTAGTAATTATAGGCGTCTAATGATTTATTTTTTAC
111245 GTTACGGTATATATTATTATTAAATTAAAAACAATAAACATATATATTACATATTTATTATTATC
66 GTTACGGTATATATTATTATTAAATTAAAAACAATAAACATATATATTACATATTTATTATTATC
111310 TTTGGTTAATATTGTTAAATTTAAATACTAAATAATATTTTATAAAATATCAAAACAATCAAATA
131 TTTGGTTAATATTGTTAAATTTAAATACTAAATAATATTTTATAAAATATCAAAACAATCAAATA
* * *
111375 ATTTTTTGTGTAAATGAAATTATTAAATTAATATTATAGGTAGAAAGCATGAAACACTATTAAAA
196 ATTTTTTGTGTAAATGAAATTATTAAATTAATATTGTAGGTGGAAAACATGAAACACTATTAAAA
* *
111440 AAATTGAAACATAAATTACATAACTTTAAAAAAATATCGATCCTTTTTATAAAAAGTATGGACAC
261 AAATTGAAACATAAATTACATAACTTTAAAAAAGTATCGATCATTTTTATAAAAAGTATGGACAC
*
111505 TTTCAATATAATAGGTAAAAATATGATGTAATAGGTAGCGCTTATATAATGTAATAAGTAGCGTT
326 TTTCAATATAATAGGTAAAAATATGATGTAATAGGTAGCGCTTATATAATGTAATAGGTAGCGTT
111570 TATATAATGTAATAGGTAGTGCTTATATTGTAAAGTATCTATCCTTTTTATAAAAGTGTCCATAC
391 TATATAATGTAATAGGTAGTGCTTATATTGTAAAGTATCTATCCTTTTTATAAAAGTGTCCATAC
*
111635 TTTTTTCACTGTGGAAAACATTAATTTAAGATT
456 TTTTTTCACTGTGGAAAACATTAATTTAAGGTT
111668 ATCTTTTGAGTGAGTTTTAAGATATTAATTTAGTAATTATAGGCGTCTAATGATTTATTTTTTAC
1 ATCTTTTGAGTGAGTTTTAAGATATTAATTTAGTAATTATAGGCGTCTAATGATTTATTTTTTAC
*
111733 GTTACGGTATATATTATTATTAAATTAAAAACAATAAATATATATATTACATATTTATTATTATC
66 GTTACGGTATATATTATTATTAAATTAAAAACAATAAACATATATATTACATATTTATTATTATC
* *
111798 TTTGGTTAATATTGTTAAATTTAAATTCTAAATATTATTTTATAAAATATCAAAACAATCAAATA
131 TTTGGTTAATATTGTTAAATTTAAATACTAAATAATATTTTATAAAATATCAAAACAATCAAATA
** *
111863 ATTTTTTGTACAAATGAAATTATTAAATTAATATTGTAGGTAGAAAACATGAAACACTATTAAAA
196 ATTTTTTGTGTAAATGAAATTATTAAATTAATATTGTAGGTGGAAAACATGAAACACTATTAAAA
* * *
111928 AAATTGAAACATAAATTACATAACTTTAAAAAAAATATTGATCATTTTTATAAAACGTATGGACA
261 AAATTGAAACATAAATTACATAACTTT-AAAAAAGTATCGATCATTTTTATAAAAAGTATGGACA
* * *
111993 TTTTCAATATAATAGATAAAAATATGATGTAATAGGTAGCGCTTATATAATGTAATAGGTAACGT
325 CTTTCAATATAATAGGTAAAAATATGATGTAATAGGTAGCGCTTATATAATGTAATAGGTAGCGT
*
112058 TTATATAATGTAATAGGTAGTGCTTATATTGTAAAGTATCTATCATTTTTATAAAAGTGTCCATA
390 TTATATAATGTAATAGGTAGTGCTTATATTGTAAAGTATCTATCCTTTTTATAAAAGTGTCCATA
*
112123 CTTATTTCACTGTGGAAAACATTAATTTAAGGTT
455 CTTTTTTCACTGTGGAAAACATTAATTTAAGGTT
* * * ** *
112157 ATATTTTGAGTGAGTTTTAAGATATCAATTTAGTAATTATATGTATCTAATGATTTATTTTTTAT
1 ATCTTTTGAGTGAGTTTTAAGATATTAATTTAGTAATTATAGGCGTCTAATGATTTATTTTTTAC
112222 GTTACGGTATATATTATTATTAAATTAAAAACAATAAACATATATATTACATATTTATTATTATC
66 GTTACGGTATATATTATTATTAAATTAAAAACAATAAACATATATATTACATATTTATTATTATC
* *
112287 TTTGGTTAATATTGTTAAATTTAAATTCTAAATATTATTTTATAAAATATCAAAACAATCAAATA
131 TTTGGTTAATATTGTTAAATTTAAATACTAAATAATATTTTATAAAATATCAAAACAATCAAATA
*
112352 ATTTTTTGTGCAAATGAAATTATTAAATTAATATTGTAGGTGGAAAACATGAAACACTATT-AAA
196 ATTTTTTGTGTAAATGAAATTATTAAATTAATATTGTAGGTGGAAAACATGAAACACTATTAAAA
* * *
112416 AAATTGAAACATAAATTACATAACTTTAAAAAAAAGTATCGATCTTTTTTATAAAAAAATATAGA
261 AAATTGAAACATAAATTACATAACTTT--AAAAAAGTATCGATCATTTTTAT-AAAAAGTATGGA
112481 CACTTTCAA
323 CACTTTCAA
112490 CATATTATAA
Statistics
Matches: 2196, Mismatches: 83, Indels: 13
0.96 0.04 0.01
Matches are distributed among these distances:
487 188 0.09
488 1089 0.50
489 902 0.41
490 17 0.01
ACGTcount: A:0.42, C:0.07, G:0.11, T:0.40
Consensus pattern (488 bp):
ATCTTTTGAGTGAGTTTTAAGATATTAATTTAGTAATTATAGGCGTCTAATGATTTATTTTTTAC
GTTACGGTATATATTATTATTAAATTAAAAACAATAAACATATATATTACATATTTATTATTATC
TTTGGTTAATATTGTTAAATTTAAATACTAAATAATATTTTATAAAATATCAAAACAATCAAATA
ATTTTTTGTGTAAATGAAATTATTAAATTAATATTGTAGGTGGAAAACATGAAACACTATTAAAA
AAATTGAAACATAAATTACATAACTTTAAAAAAGTATCGATCATTTTTATAAAAAGTATGGACAC
TTTCAATATAATAGGTAAAAATATGATGTAATAGGTAGCGCTTATATAATGTAATAGGTAGCGTT
TATATAATGTAATAGGTAGTGCTTATATTGTAAAGTATCTATCCTTTTTATAAAAGTGTCCATAC
TTTTTTCACTGTGGAAAACATTAATTTAAGGTT
Found at i:111018 original size:23 final size:21
Alignment explanation
Indices: 110975--111018 Score: 52
Period size: 22 Copynumber: 2.0 Consensus size: 21
110965 ATTACATAAC
*
110975 TTTAAAAAAGTATCGATCTTT
1 TTTAAAAAAGTATCGAACTTT
*
110996 TTTATAAAAAGTATGGACACTTT
1 TTTA-AAAAAGTATCGA-ACTTT
111019 CAATATAATA
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
21 4 0.21
22 11 0.58
23 4 0.21
ACGTcount: A:0.39, C:0.09, G:0.11, T:0.41
Consensus pattern (21 bp):
TTTAAAAAAGTATCGAACTTT
Found at i:111071 original size:23 final size:23
Alignment explanation
Indices: 111036--111108 Score: 110
Period size: 23 Copynumber: 3.2 Consensus size: 23
111026 ATAGGTAAAA
* *
111036 ATATGATGGAATAGGTAGCGCTT
1 ATATAATGTAATAGGTAGCGCTT
*
111059 ATATAATGTAATAGGTAGCGTTT
1 ATATAATGTAATAGGTAGCGCTT
*
111082 ATATAATGTAATAGGTAGTGCTT
1 ATATAATGTAATAGGTAGCGCTT
111105 ATAT
1 ATAT
111109 TGTAAAGTAT
Statistics
Matches: 45, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
23 45 1.00
ACGTcount: A:0.34, C:0.05, G:0.23, T:0.37
Consensus pattern (23 bp):
ATATAATGTAATAGGTAGCGCTT
Found at i:111556 original size:23 final size:23
Alignment explanation
Indices: 111525--111597 Score: 110
Period size: 23 Copynumber: 3.2 Consensus size: 23
111515 ATAGGTAAAA
*
111525 ATATGATGTAATAGGTAGCGCTT
1 ATATAATGTAATAGGTAGCGCTT
* *
111548 ATATAATGTAATAAGTAGCGTTT
1 ATATAATGTAATAGGTAGCGCTT
*
111571 ATATAATGTAATAGGTAGTGCTT
1 ATATAATGTAATAGGTAGCGCTT
111594 ATAT
1 ATAT
111598 TGTAAAGTAT
Statistics
Matches: 44, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
23 44 1.00
ACGTcount: A:0.36, C:0.05, G:0.21, T:0.38
Consensus pattern (23 bp):
ATATAATGTAATAGGTAGCGCTT
Found at i:112045 original size:23 final size:23
Alignment explanation
Indices: 112014--112086 Score: 110
Period size: 23 Copynumber: 3.2 Consensus size: 23
112004 ATAGATAAAA
*
112014 ATATGATGTAATAGGTAGCGCTT
1 ATATAATGTAATAGGTAGCGCTT
* *
112037 ATATAATGTAATAGGTAACGTTT
1 ATATAATGTAATAGGTAGCGCTT
*
112060 ATATAATGTAATAGGTAGTGCTT
1 ATATAATGTAATAGGTAGCGCTT
112083 ATAT
1 ATAT
112087 TGTAAAGTAT
Statistics
Matches: 44, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
23 44 1.00
ACGTcount: A:0.36, C:0.05, G:0.21, T:0.38
Consensus pattern (23 bp):
ATATAATGTAATAGGTAGCGCTT
Found at i:113331 original size:19 final size:18
Alignment explanation
Indices: 113307--113342 Score: 54
Period size: 19 Copynumber: 1.9 Consensus size: 18
113297 CTTGGAAGAA
113307 TTTCTTCATTTCTTTTTCG
1 TTTCTTCATTT-TTTTTCG
*
113326 TTTCTTTATTTTTTTTC
1 TTTCTTCATTTTTTTTC
113343 TCTGTTGGTT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 6 0.38
19 10 0.62
ACGTcount: A:0.06, C:0.17, G:0.03, T:0.75
Consensus pattern (18 bp):
TTTCTTCATTTTTTTTCG
Found at i:137696 original size:23 final size:23
Alignment explanation
Indices: 137666--137713 Score: 78
Period size: 23 Copynumber: 2.1 Consensus size: 23
137656 AGGAGAACAT
* *
137666 ATATAATTGATTAAATTATATAA
1 ATATAATTGATTAAAGTATAGAA
137689 ATATAATTGATTAAAGTATAGAA
1 ATATAATTGATTAAAGTATAGAA
137712 AT
1 AT
137714 TATTGTCGAA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
23 23 1.00
ACGTcount: A:0.52, C:0.00, G:0.08, T:0.40
Consensus pattern (23 bp):
ATATAATTGATTAAAGTATAGAA
Found at i:138275 original size:25 final size:23
Alignment explanation
Indices: 138231--138277 Score: 58
Period size: 25 Copynumber: 2.0 Consensus size: 23
138221 GGTACAATCC
*
138231 TACTACGACACTTTCGAGTGCAA
1 TACTACGACACTTTCAAGTGCAA
*
138254 TACTACGAGGCACTTTTAAGTGCA
1 TACTACGA--CACTTTCAAGTGCA
138278 TATAGTGTGC
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
23 8 0.40
25 12 0.60
ACGTcount: A:0.30, C:0.23, G:0.19, T:0.28
Consensus pattern (23 bp):
TACTACGACACTTTCAAGTGCAA
Found at i:138972 original size:23 final size:23
Alignment explanation
Indices: 138946--138994 Score: 89
Period size: 23 Copynumber: 2.1 Consensus size: 23
138936 GGTTCTACGC
138946 GGTCCTTCAGGACAATTCTATGT
1 GGTCCTTCAGGACAATTCTATGT
*
138969 GGTCCTTCGGGACAATTCTATGT
1 GGTCCTTCAGGACAATTCTATGT
138992 GGT
1 GGT
138995 TTTTATGGAT
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
23 25 1.00
ACGTcount: A:0.18, C:0.20, G:0.27, T:0.35
Consensus pattern (23 bp):
GGTCCTTCAGGACAATTCTATGT
Found at i:139043 original size:24 final size:24
Alignment explanation
Indices: 139016--139064 Score: 89
Period size: 24 Copynumber: 2.0 Consensus size: 24
139006 AATCTATGTT
*
139016 GCACTTCGGTGCATATTCTACGTG
1 GCACTTCGGTGCAAATTCTACGTG
139040 GCACTTCGGTGCAAATTCTACGTG
1 GCACTTCGGTGCAAATTCTACGTG
139064 G
1 G
139065 TAGTTTCGAC
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.18, C:0.24, G:0.27, T:0.31
Consensus pattern (24 bp):
GCACTTCGGTGCAAATTCTACGTG
Found at i:139602 original size:11 final size:11
Alignment explanation
Indices: 139586--139614 Score: 58
Period size: 11 Copynumber: 2.6 Consensus size: 11
139576 GTTAAGGTTT
139586 AAATTTTAAAC
1 AAATTTTAAAC
139597 AAATTTTAAAC
1 AAATTTTAAAC
139608 AAATTTT
1 AAATTTT
139615 CAAAGAGTCA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 18 1.00
ACGTcount: A:0.52, C:0.07, G:0.00, T:0.41
Consensus pattern (11 bp):
AAATTTTAAAC
Found at i:142607 original size:20 final size:20
Alignment explanation
Indices: 142565--142715 Score: 151
Period size: 20 Copynumber: 7.5 Consensus size: 20
142555 CAACGCACTA
*
142565 CGCAACGAGTATCCGTAAAAT
1 CGCAACGCGTATCCGT-AAAT
142586 CGCAACGCGTATCCGTAAAT
1 CGCAACGCGTATCCGTAAAT
* * *
142606 CGCAACGAGAATACGTAAAT
1 CGCAACGCGTATCCGTAAAT
* *
142626 CGCAACGCATATCTGTAAAT
1 CGCAACGCGTATCCGTAAAT
* * *
142646 CGCAACGAGAATACGTAAAT
1 CGCAACGCGTATCCGTAAAT
* *
142666 CGCAACG-ATAATACGTAAAAT
1 CGCAACGCGT-ATCCGT-AAAT
* *
142687 CGCAATGCGTATCTGTAAAT
1 CGCAACGCGTATCCGTAAAT
142707 CGCAACGCG
1 CGCAACGCG
142716 ATTTTTAAAG
Statistics
Matches: 106, Mismatches: 21, Indels: 7
0.79 0.16 0.05
Matches are distributed among these distances:
20 76 0.72
21 29 0.27
22 1 0.01
ACGTcount: A:0.38, C:0.24, G:0.19, T:0.19
Consensus pattern (20 bp):
CGCAACGCGTATCCGTAAAT
Found at i:142644 original size:40 final size:39
Alignment explanation
Indices: 142565--142714 Score: 169
Period size: 40 Copynumber: 3.7 Consensus size: 39
142555 CAACGCACTA
* * *
142565 CGCAACGAGTATCCGTAAAATCGCAACGCGTATCCGTAAAT
1 CGCAACGAGAATACGT-AAATCGCAACGCATAT-CGTAAAT
142606 CGCAACGAGAATACGTAAATCGCAACGCATATCTGTAAAT
1 CGCAACGAGAATACGTAAATCGCAACGCATATC-GTAAAT
142646 CGCAACGAGAATACGTAAATCGCAACG-ATAATACGTAAAAT
1 CGCAACGAGAATACGTAAATCGCAACGCAT-AT-CGT-AAAT
* * *
142687 CGCAATGCGTAT-CTGTAAATCGCAACGC
1 CGCAACGAGAATAC-GTAAATCGCAACGC
142715 GATTTTTAAA
Statistics
Matches: 97, Mismatches: 6, Indels: 11
0.85 0.05 0.10
Matches are distributed among these distances:
39 3 0.03
40 53 0.55
41 41 0.42
ACGTcount: A:0.38, C:0.24, G:0.19, T:0.19
Consensus pattern (39 bp):
CGCAACGAGAATACGTAAATCGCAACGCATATCGTAAAT
Found at i:143300 original size:20 final size:20
Alignment explanation
Indices: 143275--143365 Score: 114
Period size: 20 Copynumber: 4.5 Consensus size: 20
143265 TTCTAAACTT
143275 AAAATCGCAACATGAAAATG
1 AAAATCGCAACATGAAAATG
143295 AAAATCGCAACATGAAAATG
1 AAAATCGCAACATGAAAATG
**
143315 ACTATCGCAACGA-GAGAAATG
1 AAAATCGCAAC-ATGA-AAATG
**
143336 AAAATCGCAACGCG-AAATG
1 AAAATCGCAACATGAAAATG
143355 AAAATCGCAAC
1 AAAATCGCAAC
143366 GAGATAATCG
Statistics
Matches: 63, Mismatches: 5, Indels: 7
0.84 0.07 0.09
Matches are distributed among these distances:
19 16 0.25
20 31 0.49
21 16 0.25
ACGTcount: A:0.51, C:0.19, G:0.18, T:0.13
Consensus pattern (20 bp):
AAAATCGCAACATGAAAATG
Found at i:143354 original size:19 final size:19
Alignment explanation
Indices: 143275--143402 Score: 86
Period size: 19 Copynumber: 6.8 Consensus size: 19
143265 TTCTAAACTT
**
143275 AAAATCGCAACATGAAAATG
1 AAAATCGCAACGCG-AAATG
**
143295 AAAATCGCAACATGAAAATG
1 AAAATCGCAACGCG-AAATG
** *
143315 ACTATCGCAACGAGAGAAATG
1 AAAATCGCAAC--GCGAAATG
143336 AAAATCGCAACGCGAAATG
1 AAAATCGCAACGCGAAATG
143355 AAAATCGCAA--CG--A-G
1 AAAATCGCAACGCGAAATG
* **
143369 ATAATCGCAACGCGAAACC
1 AAAATCGCAACGCGAAATG
*
143388 AAAATCACAACGCGA
1 AAAATCGCAACGCGA
143403 TTTTAATTTC
Statistics
Matches: 90, Mismatches: 11, Indels: 15
0.78 0.09 0.13
Matches are distributed among these distances:
14 10 0.11
15 1 0.01
16 2 0.02
17 2 0.02
18 1 0.01
19 30 0.33
20 29 0.32
21 14 0.16
22 1 0.01
ACGTcount: A:0.49, C:0.21, G:0.18, T:0.12
Consensus pattern (19 bp):
AAAATCGCAACGCGAAATG
Found at i:143421 original size:19 final size:19
Alignment explanation
Indices: 143399--143444 Score: 56
Period size: 19 Copynumber: 2.4 Consensus size: 19
143389 AAATCACAAC
* *
143399 GCGATTTTAATTTCTCGTT
1 GCGATTCTAATTTCGCGTT
*
143418 GCGATTCTCATTTCGCGTT
1 GCGATTCTAATTTCGCGTT
*
143437 ACGATTCT
1 GCGATTCT
143445 CTCATCGCGA
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
19 23 1.00
ACGTcount: A:0.15, C:0.22, G:0.17, T:0.46
Consensus pattern (19 bp):
GCGATTCTAATTTCGCGTT
Found at i:143445 original size:19 final size:19
Alignment explanation
Indices: 143408--143445 Score: 58
Period size: 19 Copynumber: 2.0 Consensus size: 19
143398 CGCGATTTTA
* *
143408 ATTTCTCGTTGCGATTCTC
1 ATTTCGCGTTACGATTCTC
143427 ATTTCGCGTTACGATTCTC
1 ATTTCGCGTTACGATTCTC
143446 TCATCGCGAT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.13, C:0.26, G:0.16, T:0.45
Consensus pattern (19 bp):
ATTTCGCGTTACGATTCTC
Found at i:143476 original size:20 final size:20
Alignment explanation
Indices: 143440--143495 Score: 78
Period size: 20 Copynumber: 2.8 Consensus size: 20
143430 TCGCGTTACG
* *
143440 ATTCTCTCATCGCGATAGTC
1 ATTCTCTCGTTGCGATAGTC
143460 ATT-TCTGCGTTGCGATAGTC
1 ATTCTCT-CGTTGCGATAGTC
143480 ATTCTCTCGTTGCGAT
1 ATTCTCTCGTTGCGAT
143496 TTTCATTTCA
Statistics
Matches: 32, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
19 3 0.09
20 26 0.81
21 3 0.09
ACGTcount: A:0.16, C:0.25, G:0.20, T:0.39
Consensus pattern (20 bp):
ATTCTCTCGTTGCGATAGTC
Found at i:146953 original size:14 final size:14
Alignment explanation
Indices: 146934--146967 Score: 59
Period size: 14 Copynumber: 2.4 Consensus size: 14
146924 TGTTTAATTA
146934 ATTTGTAAAAGATG
1 ATTTGTAAAAGATG
*
146948 ATTTGTAAAAGTTG
1 ATTTGTAAAAGATG
146962 ATTTGT
1 ATTTGT
146968 TTAATTGATG
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
14 19 1.00
ACGTcount: A:0.35, C:0.00, G:0.21, T:0.44
Consensus pattern (14 bp):
ATTTGTAAAAGATG
Found at i:147095 original size:19 final size:18
Alignment explanation
Indices: 147073--147171 Score: 54
Period size: 19 Copynumber: 5.7 Consensus size: 18
147063 AAAAATGACT
147073 ATCGCAATGCGAAATGAAA
1 ATCGCAA-GCGAAATGAAA
*
147092 ATCGCAA-CG--A-GAGA
1 ATCGCAAGCGAAATGAAA
* *
147106 ATCGCTATGCGAAATTAAA
1 ATCGC-AAGCGAAATGAAA
*
147125 ATCGCAA-CG--A-CAAA
1 ATCGCAAGCGAAATGAAA
147139 ATCGCAACGCGAAACT-AAA
1 ATCGCAA-GCGAAA-TGAAA
147158 ATCGCAAAGCGAAA
1 ATCGC-AAGCGAAA
147172 CTAAATTCGC
Statistics
Matches: 62, Mismatches: 6, Indels: 24
0.67 0.07 0.26
Matches are distributed among these distances:
14 18 0.29
15 3 0.05
16 4 0.06
17 4 0.06
18 3 0.05
19 28 0.45
20 2 0.03
ACGTcount: A:0.46, C:0.21, G:0.19, T:0.13
Consensus pattern (18 bp):
ATCGCAAGCGAAATGAAA
Found at i:147116 original size:33 final size:32
Alignment explanation
Indices: 147073--147164 Score: 121
Period size: 33 Copynumber: 2.8 Consensus size: 32
147063 AAAAATGACT
* *
147073 ATCGCAATGCGAAATGAAAATCGCAACGAGAGA
1 ATCGCAATGCGAAAT-AAAATCGCAACGACAAA
*
147106 ATCGCTATGCGAAATTAAAATCGCAACGACAAA
1 ATCGCAATGCGAAA-TAAAATCGCAACGACAAA
*
147139 ATCGCAACGCGAAACTAAAATCGCAA
1 ATCGCAATGCGAAA-TAAAATCGCAA
147165 AGCGAAACTA
Statistics
Matches: 52, Mismatches: 6, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
33 51 0.98
34 1 0.02
ACGTcount: A:0.46, C:0.22, G:0.18, T:0.14
Consensus pattern (32 bp):
ATCGCAATGCGAAATAAAATCGCAACGACAAA
Found at i:147188 original size:19 final size:19
Alignment explanation
Indices: 147136--147181 Score: 74
Period size: 19 Copynumber: 2.4 Consensus size: 19
147126 TCGCAACGAC
*
147136 AAAATCGCAACGCGAAACT
1 AAAATCGCAAAGCGAAACT
147155 AAAATCGCAAAGCGAAACT
1 AAAATCGCAAAGCGAAACT
*
147174 AAATTCGC
1 AAAATCGC
147182 GTTGCGATTT
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
19 25 1.00
ACGTcount: A:0.48, C:0.24, G:0.15, T:0.13
Consensus pattern (19 bp):
AAAATCGCAAAGCGAAACT
Found at i:147228 original size:33 final size:33
Alignment explanation
Indices: 147181--147274 Score: 161
Period size: 33 Copynumber: 2.8 Consensus size: 33
147171 ACTAAATTCG
147181 CGTTGCGATTTTCATTTCGCATTGCGATTCCCT
1 CGTTGCGATTTTCATTTCGCATTGCGATTCCCT
* *
147214 CGTTGCGATATTCATTTCGCATTGCGATTCTCT
1 CGTTGCGATTTTCATTTCGCATTGCGATTCCCT
*
147247 CGTTGCAATTTTCATTTCGCATTGCGAT
1 CGTTGCGATTTTCATTTCGCATTGCGAT
147275 AGTCATTTTC
Statistics
Matches: 57, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
33 57 1.00
ACGTcount: A:0.15, C:0.24, G:0.18, T:0.43
Consensus pattern (33 bp):
CGTTGCGATTTTCATTTCGCATTGCGATTCCCT
Found at i:147295 original size:53 final size:52
Alignment explanation
Indices: 147216--147327 Score: 170
Period size: 53 Copynumber: 2.1 Consensus size: 52
147206 GATTCCCTCG
* *
147216 TTGCGATATTCATTTCGCATTGCGATTCTCTCGTTGCAATTTTCATTTCGCA
1 TTGCGATAGTCATTTCGCATTGCGATTCTCACGTTGCAATTTTCATTTCGCA
* * *
147268 TTGCGATAGTCATTTTCGCGTTGCGATTTTCACGTTGCGATTTTCATTTCGCA
1 TTGCGATAGTCA-TTTCGCATTGCGATTCTCACGTTGCAATTTTCATTTCGCA
147321 TTGCGAT
1 TTGCGAT
147328 TCTCTCGTTG
Statistics
Matches: 54, Mismatches: 5, Indels: 1
0.90 0.08 0.02
Matches are distributed among these distances:
52 11 0.20
53 43 0.80
ACGTcount: A:0.16, C:0.21, G:0.19, T:0.44
Consensus pattern (52 bp):
TTGCGATAGTCATTTCGCATTGCGATTCTCACGTTGCAATTTTCATTTCGCA
Found at i:147298 original size:14 final size:14
Alignment explanation
Indices: 147279--147313 Score: 61
Period size: 14 Copynumber: 2.5 Consensus size: 14
147269 TGCGATAGTC
*
147279 ATTTTCGCGTTGCG
1 ATTTTCACGTTGCG
147293 ATTTTCACGTTGCG
1 ATTTTCACGTTGCG
147307 ATTTTCA
1 ATTTTCA
147314 TTTCGCATTG
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
14 20 1.00
ACGTcount: A:0.14, C:0.20, G:0.20, T:0.46
Consensus pattern (14 bp):
ATTTTCACGTTGCG
Found at i:147350 original size:33 final size:33
Alignment explanation
Indices: 147268--147361 Score: 107
Period size: 33 Copynumber: 2.8 Consensus size: 33
147258 TCATTTCGCA
* *
147268 TTGCGATAGTCATTTTCGCGTTGCGATTTTCACG
1 TTGCGATAGT-AATTTCGCGTTGCGATTCTCACG
** * * *
147302 TTGCGATTTTCATTTCGCATTGCGATTCTCTCG
1 TTGCGATAGTAATTTCGCGTTGCGATTCTCACG
147335 TTGCGATAGTAATTTCCGCGTTGCGAT
1 TTGCGATAGTAATTT-CGCGTTGCGAT
147362 AGACATTAAG
Statistics
Matches: 48, Mismatches: 11, Indels: 2
0.79 0.18 0.03
Matches are distributed among these distances:
33 30 0.62
34 18 0.38
ACGTcount: A:0.15, C:0.21, G:0.22, T:0.41
Consensus pattern (33 bp):
TTGCGATAGTAATTTCGCGTTGCGATTCTCACG
Found at i:147350 original size:86 final size:86
Alignment explanation
Indices: 147177--147368 Score: 251
Period size: 86 Copynumber: 2.2 Consensus size: 86
147167 CGAAACTAAA
** *
147177 TTCGCGTTGCGATTTTCA-TTTCGCATTGCGATTCCCTCGTTGCGATATTCATTTCGCATTGCGA
1 TTCGCGTTGCGATAGTCATTTTCGCATTGCGATTCCCACGTTGCGATATTCATTTCGCATTGCGA
** *
147241 TTCTCTCGTTGCAATTTTCAT
66 TTCTCTCGTTGCAATAGTAAT
* * ** *
147262 TTCGCATTGCGATAGTCATTTTCGCGTTGCGATTTTCACGTTGCGATTTTCATTTCGCATTGCGA
1 TTCGCGTTGCGATAGTCATTTTCGCATTGCGATTCCCACGTTGCGATATTCATTTCGCATTGCGA
*
147327 TTCTCTCGTTGCGATAGTAAT
66 TTCTCTCGTTGCAATAGTAAT
*
147348 TTCCGCGTTGCGATAGACATT
1 TT-CGCGTTGCGATAGTCATT
147369 AAGATGATTG
Statistics
Matches: 91, Mismatches: 14, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
85 15 0.16
86 60 0.66
87 16 0.18
ACGTcount: A:0.16, C:0.23, G:0.20, T:0.42
Consensus pattern (86 bp):
TTCGCGTTGCGATAGTCATTTTCGCATTGCGATTCCCACGTTGCGATATTCATTTCGCATTGCGA
TTCTCTCGTTGCAATAGTAAT
Found at i:149688 original size:3 final size:3
Alignment explanation
Indices: 149680--149706 Score: 54
Period size: 3 Copynumber: 9.0 Consensus size: 3
149670 CTTTGGGGAT
149680 TTC TTC TTC TTC TTC TTC TTC TTC TTC
1 TTC TTC TTC TTC TTC TTC TTC TTC TTC
149707 AGTGTTATAT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 24 1.00
ACGTcount: A:0.00, C:0.33, G:0.00, T:0.67
Consensus pattern (3 bp):
TTC
Found at i:149915 original size:24 final size:24
Alignment explanation
Indices: 149881--149934 Score: 90
Period size: 24 Copynumber: 2.2 Consensus size: 24
149871 CTGAAAAATC
149881 ATCAAAATCCGAGTATTGACCAAG
1 ATCAAAATCCGAGTATTGACCAAG
* *
149905 ATCAAAGTCCGGGTATTGACCAAG
1 ATCAAAATCCGAGTATTGACCAAG
149929 ATCAAA
1 ATCAAA
149935 TTTCGAATAC
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
24 28 1.00
ACGTcount: A:0.41, C:0.20, G:0.19, T:0.20
Consensus pattern (24 bp):
ATCAAAATCCGAGTATTGACCAAG
Found at i:149948 original size:24 final size:24
Alignment explanation
Indices: 149881--149948 Score: 64
Period size: 24 Copynumber: 2.8 Consensus size: 24
149871 CTGAAAAATC
* * *
149881 ATCAAAATCCGAGTATTGACCAAG
1 ATCAAAGTCCGAATACTGACCAAG
** *
149905 ATCAAAGTCCGGGTATTGACCAAG
1 ATCAAAGTCCGAATACTGACCAAG
* *
149929 ATCAAATTTCGAATACTGAC
1 ATCAAAGTCCGAATACTGAC
149949 TAGTACTCAC
Statistics
Matches: 37, Mismatches: 7, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
24 37 1.00
ACGTcount: A:0.38, C:0.21, G:0.18, T:0.24
Consensus pattern (24 bp):
ATCAAAGTCCGAATACTGACCAAG
Found at i:150808 original size:20 final size:19
Alignment explanation
Indices: 150787--151046 Score: 155
Period size: 20 Copynumber: 12.9 Consensus size: 19
150777 GCGATAGTCA
*
150787 GAATCTCGTTGCGATTTAC
1 GAATCGCGTTGCGATTTAC
* *
150806 AGATTCGCATTGCGATTTAC
1 -GAATCGCGTTGCGATTTAC
**
150826 GTGTTCGCGTTGCGATTTAC
1 G-AATCGCGTTGCGATTTAC
* * *
150846 GTATTCGCATTGCGATTTAT
1 G-AATCGCGTTGCGATTTAC
* *
150866 GGATACGCATTGCGATTTAC
1 GAAT-CGCGTTGCGATTTAC
* *
150886 GTATTCTCGTTGCGATTTAC
1 G-AATCGCGTTGCGATTTAC
*
150906 -AGATACACGTTGCGATTTAC
1 GA-AT-CGCGTTGCGATTTAC
* *
150926 GTATTCTCGTTGCGATTTAC
1 G-AATCGCGTTGCGATTTAC
*
150946 GGATACGCGTTGCGATTTTAC
1 GAAT-CGCGTTGCGA-TTTAC
* *
150967 GTATTGTCGTTGCGATTTAC
1 GAATCG-CGTTGCGATTTAC
*
150987 GGATACGCGTTGCGATTTTAC
1 GAAT-CGCGTTGCGA-TTTAC
* * * *
151008 GGATACTCATTGCGATAGT-C
1 GAAT-CGCGTTGCGAT-TTAC
151028 AGAATCGCGTTGCGATTTA
1 -GAATCGCGTTGCGATTTA
151047 TATGTTCGCG
Statistics
Matches: 192, Mismatches: 33, Indels: 30
0.75 0.13 0.12
Matches are distributed among these distances:
18 1 0.01
19 5 0.03
20 144 0.75
21 41 0.21
22 1 0.01
ACGTcount: A:0.20, C:0.19, G:0.24, T:0.37
Consensus pattern (19 bp):
GAATCGCGTTGCGATTTAC
Found at i:150837 original size:40 final size:40
Alignment explanation
Indices: 150793--151023 Score: 279
Period size: 40 Copynumber: 5.7 Consensus size: 40
150783 GTCAGAATCT
*
150793 CGTTGCGATTTACAG-ATTCGCATTGCGATTTACGTG-TTCG
1 CGTTGCGATTTAC-GTATTCGCATTGCGATTTACG-GATACG
*
150833 CGTTGCGATTTACGTATTCGCATTGCGATTTATGGATACG
1 CGTTGCGATTTACGTATTCGCATTGCGATTTACGGATACG
* * * * *
150873 CATTGCGATTTACGTATTCTCGTTGCGATTTACAGATACA
1 CGTTGCGATTTACGTATTCGCATTGCGATTTACGGATACG
* *
150913 CGTTGCGATTTACGTATTCTCGTTGCGATTTACGGATACG
1 CGTTGCGATTTACGTATTCGCATTGCGATTTACGGATACG
*
150953 CGTTGCGATTTTACGTATT-GTCGTTGCGATTTACGGATACG
1 CGTTGCGA-TTTACGTATTCG-CATTGCGATTTACGGATACG
* * *
150994 CGTTGCGATTTTACGGATACTCATTGCGAT
1 CGTTGCGA-TTTACGTATTCGCATTGCGAT
151024 AGTCAGAATC
Statistics
Matches: 170, Mismatches: 16, Indels: 9
0.87 0.08 0.05
Matches are distributed among these distances:
39 2 0.01
40 113 0.66
41 55 0.32
ACGTcount: A:0.19, C:0.19, G:0.24, T:0.38
Consensus pattern (40 bp):
CGTTGCGATTTACGTATTCGCATTGCGATTTACGGATACG
Found at i:150860 original size:60 final size:60
Alignment explanation
Indices: 150793--151004 Score: 241
Period size: 60 Copynumber: 3.5 Consensus size: 60
150783 GTCAGAATCT
* *
150793 CGTTGCGATTTACAGATTCGCATTGCGATTTACGTGTTCGCGTTGCGATTTACGTATTCG
1 CGTTGCGATTTACGGATACGCATTGCGATTTACGTGTTCGCGTTGCGATTTACGTATTCG
* * * * * *
150853 CATTGCGATTTATGGATACGCATTGCGATTTACGTATTCTCGTTGCGATTTACAG-ATACA
1 CGTTGCGATTTACGGATACGCATTGCGATTTACGTGTTCGCGTTGCGATTTAC-GTATTCG
* * * * *
150913 CGTTGCGATTTACGTATTCTCGTTGCGATTTACG-GATACGCGTTGCGATTTTACGTATT-G
1 CGTTGCGATTTACGGATACGCATTGCGATTTACGTG-TTCGCGTTGCGA-TTTACGTATTCG
*
150973 TCGTTGCGATTTACGGATACGCGTTGCGATTT
1 -CGTTGCGATTTACGGATACGCATTGCGATTT
151005 TACGGATACT
Statistics
Matches: 125, Mismatches: 22, Indels: 9
0.80 0.14 0.06
Matches are distributed among these distances:
60 89 0.71
61 36 0.29
ACGTcount: A:0.19, C:0.19, G:0.24, T:0.38
Consensus pattern (60 bp):
CGTTGCGATTTACGGATACGCATTGCGATTTACGTGTTCGCGTTGCGATTTACGTATTCG
Found at i:152516 original size:7 final size:6
Alignment explanation
Indices: 152510--152562 Score: 54
Period size: 7 Copynumber: 8.2 Consensus size: 6
152500 GAAAAAAATG
152510 AATAAT GAATAAT AAATAAT AATAAT AA-AAT AAATAAAT AATAAT AAATAAT
1 AATAAT -AATAAT -AATAAT AATAAT AATAAT -AAT-AAT AATAAT -AATAAT
152562 A
1 A
152563 TATTATCATT
Statistics
Matches: 41, Mismatches: 1, Indels: 9
0.80 0.02 0.18
Matches are distributed among these distances:
5 3 0.07
6 14 0.34
7 21 0.51
8 3 0.07
ACGTcount: A:0.70, C:0.00, G:0.02, T:0.28
Consensus pattern (6 bp):
AATAAT
Found at i:152523 original size:3 final size:3
Alignment explanation
Indices: 152510--152562 Score: 54
Period size: 3 Copynumber: 16.3 Consensus size: 3
152500 GAAAAAAATG
152510 AAT AAT GAAT AAT AAAT AAT AAT AAT AA- AAT AAAT AAAT AAT AAT AAAT
1 AAT AAT -AAT AAT -AAT AAT AAT AAT AAT AAT -AAT -AAT AAT AAT -AAT
152559 AAT A
1 AAT A
152563 TATTATCATT
Statistics
Matches: 45, Mismatches: 0, Indels: 10
0.82 0.00 0.18
Matches are distributed among these distances:
2 2 0.04
3 27 0.60
4 16 0.36
ACGTcount: A:0.70, C:0.00, G:0.02, T:0.28
Consensus pattern (3 bp):
AAT
Found at i:152530 original size:10 final size:10
Alignment explanation
Indices: 152517--152562 Score: 65
Period size: 10 Copynumber: 4.4 Consensus size: 10
152507 ATGAATAATG
152517 AATAATAAAT
1 AATAATAAAT
*
152527 AATAATAATAA
1 AATAATAA-AT
152538 AATAAATAAAT
1 AAT-AATAAAT
152549 AATAATAAAT
1 AATAATAAAT
152559 AATA
1 AATA
152563 TATTATCATT
Statistics
Matches: 32, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
10 19 0.59
11 8 0.25
12 5 0.16
ACGTcount: A:0.72, C:0.00, G:0.00, T:0.28
Consensus pattern (10 bp):
AATAATAAAT
Found at i:153073 original size:37 final size:37
Alignment explanation
Indices: 153023--153130 Score: 180
Period size: 37 Copynumber: 2.9 Consensus size: 37
153013 TTGTGGATCT
* *
153023 TATTTTTAGGAGTTTGAATCATAGTAGAACTCTATCA
1 TATTTTTAGGAGTTTGAATCATAATAAAACTCTATCA
* *
153060 TATTTTTAGGAGTTTGAATCCTAATAAAACTCTATCC
1 TATTTTTAGGAGTTTGAATCATAATAAAACTCTATCA
153097 TATTTTTAGGAGTTTGAATCATAATAAAACTCTA
1 TATTTTTAGGAGTTTGAATCATAATAAAACTCTA
153131 ACGTTATGTT
Statistics
Matches: 66, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
37 66 1.00
ACGTcount: A:0.34, C:0.12, G:0.13, T:0.41
Consensus pattern (37 bp):
TATTTTTAGGAGTTTGAATCATAATAAAACTCTATCA
Found at i:153848 original size:34 final size:35
Alignment explanation
Indices: 153810--153892 Score: 141
Period size: 34 Copynumber: 2.4 Consensus size: 35
153800 AAGGTCTTGG
*
153810 GTTTCAAGAAAAACAATTTCAAAGG-TTTTTTTGT
1 GTTTCAAGAGAAACAATTTCAAAGGTTTTTTTTGT
153844 GTTTCAAGAGAAACAATTTCAAAGGTTTTTTTTGT
1 GTTTCAAGAGAAACAATTTCAAAGGTTTTTTTTGT
*
153879 ATTTCAAGAGAAAC
1 GTTTCAAGAGAAAC
153893 TGTCTCAAGG
Statistics
Matches: 46, Mismatches: 2, Indels: 1
0.94 0.04 0.02
Matches are distributed among these distances:
34 24 0.52
35 22 0.48
ACGTcount: A:0.36, C:0.10, G:0.16, T:0.39
Consensus pattern (35 bp):
GTTTCAAGAGAAACAATTTCAAAGGTTTTTTTTGT
Found at i:153927 original size:37 final size:36
Alignment explanation
Indices: 153880--154440 Score: 534
Period size: 36 Copynumber: 16.1 Consensus size: 36
153870 TTTTTTTGTA
* *
153880 TTTCAAGAGAAACTGTCTCAAGGGAGGCAAAATTTTG
1 TTTCAAGAGAAACTGTCTCAAGAGAGACAAAA-TTTG
*
153917 TTTCAAGAGAAACATAT-TC-A-A-AG-----ATTGGTG
1 TTTCAAGAGAAAC-TGTCTCAAGAGAGACAAAATT--TG
*
153947 TTTCAAGAGAAACTGTCTCAAGAGAGACAAAATTTTA
1 TTTCAAGAGAAACTGTCTCAAGAGAGACAAAA-TTTG
153984 TTTCAAGAGAAACTGTCTCAAGAGAGACAAAATTTG
1 TTTCAAGAGAAACTGTCTCAAGAGAGACAAAATTTG
*
154020 TTTCAAGAGAAACTGTCTCAAGAGAGACAAAACTTAG
1 TTTCAAGAGAAACTGTCTCAAGAGAGACAAAA-TTTG
* * * * *
154057 TTCCAAAAGAAACTTTCTCAAGGGAGACGAAATTTG
1 TTTCAAGAGAAACTGTCTCAAGAGAGACAAAATTTG
* *
154093 TTTCAAG-GAAAACATAT-TC-A-A-AG----ATTTTG
1 TTTCAAGAG-AAAC-TGTCTCAAGAGAGACAAAATTTG
* * *
154122 TTTCAA-AGGAACTGTCTCAAGAGACACAAAACTTG
1 TTTCAAGAGAAACTGTCTCAAGAGAGACAAAATTTG
154157 TTTCAAGAG-AACTGTCTCAAGAGAGACAAAACTTTG
1 TTTCAAGAGAAACTGTCTCAAGAGAGACAAAA-TTTG
* *
154193 TTTCAAGGGAAATTGTCTCAAGAGAGACAAAATTTG
1 TTTCAAGAGAAACTGTCTCAAGAGAGACAAAATTTG
*
154229 TTTCAAGAGAAACTGTCTCAAGAGAGACAAAACTTAG
1 TTTCAAGAGAAACTGTCTCAAGAGAGACAAAA-TTTG
* * *
154266 TTCCAAAAGAAACTGTCTCAAGGGAGACAAAATTTG
1 TTTCAAGAGAAACTGTCTCAAGAGAGACAAAATTTG
* *
154302 TTTCAAG-GAAAACAGAT-TC-A-A-AG----ATTTTG
1 TTTCAAGAG-AAACTG-TCTCAAGAGAGACAAAATTTG
* *
154331 TTTCAAGGGAAATTGTCTCAAGAGAGACAAAATTTG
1 TTTCAAGAGAAACTGTCTCAAGAGAGACAAAATTTG
* *
154367 TTTCAAGGGAAATTGTCTCAAGAGAGACAAAATTTG
1 TTTCAAGAGAAACTGTCTCAAGAGAGACAAAATTTG
* * *
154403 TTTTAAGAAAAACTGTCTCAAGAGAGAC-AACTTTG
1 TTTCAAGAGAAACTGTCTCAAGAGAGACAAAATTTG
154438 TTT
1 TTT
154441 GAGTAAATTA
Statistics
Matches: 438, Mismatches: 46, Indels: 82
0.77 0.08 0.14
Matches are distributed among these distances:
27 2 0.00
28 8 0.02
29 34 0.08
30 20 0.05
31 3 0.01
32 3 0.01
33 6 0.01
34 2 0.00
35 44 0.10
36 177 0.40
37 134 0.31
38 3 0.01
39 2 0.00
ACGTcount: A:0.40, C:0.14, G:0.19, T:0.27
Consensus pattern (36 bp):
TTTCAAGAGAAACTGTCTCAAGAGAGACAAAATTTG
Found at i:154039 original size:73 final size:73
Alignment explanation
Indices: 153945--154440 Score: 497
Period size: 73 Copynumber: 7.1 Consensus size: 73
153935 CAAAGATTGG
153945 TGTTTCAAGAGAAACTGTCTCAAGAGAGACAAAATTTTATTTCAAGAGAAACTGTCTCAAGAGAG
1 TGTTTCAAGAGAAACTGTCTCAAGAGAGACAAAATTTTATTTCAAGAGAAACTGTCTCAAGAGAG
154010 ACAAAATT
66 ACAAAATT
* * * * *
154018 TGTTTCAAGAGAAACTGTCTCAAGAGAGACAAAA-CTTAGTTCCAAAAGAAACTTTCTCAAGGGA
1 TGTTTCAAGAGAAACTGTCTCAAGAGAGACAAAATTTTA-TTTCAAGAGAAACTGTCTCAAGAGA
*
154082 GACGAAATT
65 GACAAAATT
* * *
154091 TGTTTCAAG-GAAAACATAT-TC-A-A-AG-----ATTTTGTTTCAA-AGGAACTGTCTCAAGAG
1 TGTTTCAAGAG-AAAC-TGTCTCAAGAGAGACAAAATTTTATTTCAAGAGAAACTGTCTCAAGAG
* *
154145 ACACAAAACT
64 AGACAAAATT
* * * *
154155 TGTTTCAAGAG-AACTGTCTCAAGAGAGACAAAACTTTGTTTCAAGGGAAATTGTCTCAAGAGAG
1 TGTTTCAAGAGAAACTGTCTCAAGAGAGACAAAATTTTATTTCAAGAGAAACTGTCTCAAGAGAG
154219 ACAAAATT
66 ACAAAATT
* * * *
154227 TGTTTCAAGAGAAACTGTCTCAAGAGAGACAAAA-CTTAGTTCCAAAAGAAACTGTCTCAAGGGA
1 TGTTTCAAGAGAAACTGTCTCAAGAGAGACAAAATTTTA-TTTCAAGAGAAACTGTCTCAAGAGA
154291 GACAAAATT
65 GACAAAATT
* * * *
154300 TGTTTCAAG-GAAAACAGAT-TC-A-A-AG-----ATTTTGTTTCAAGGGAAATTGTCTCAAGAG
1 TGTTTCAAGAG-AAACTG-TCTCAAGAGAGACAAAATTTTATTTCAAGAGAAACTGTCTCAAGAG
154355 AGACAAAATT
64 AGACAAAATT
* * *
154365 TGTTTCAAGGGAAATTGTCTCAAGAGAGACAAAATTTGT-TTT-AAGAAAAACTGTCTCAAGAGA
1 TGTTTCAAGAGAAACTGTCTCAAGAGAGACAAAATTT-TATTTCAAGAGAAACTGTCTCAAGAGA
*
154428 GAC-AACTT
65 GACAAAATT
154436 TGTTT
1 TGTTT
154441 GAGTAAATTA
Statistics
Matches: 348, Mismatches: 44, Indels: 64
0.76 0.10 0.14
Matches are distributed among these distances:
62 2 0.01
63 5 0.01
64 32 0.09
65 53 0.15
66 8 0.02
67 1 0.00
68 2 0.01
70 4 0.01
71 22 0.06
72 63 0.18
73 152 0.44
74 4 0.01
ACGTcount: A:0.40, C:0.14, G:0.19, T:0.27
Consensus pattern (73 bp):
TGTTTCAAGAGAAACTGTCTCAAGAGAGACAAAATTTTATTTCAAGAGAAACTGTCTCAAGAGAG
ACAAAATT
Found at i:154185 original size:209 final size:210
Alignment explanation
Indices: 153945--154440 Score: 811
Period size: 209 Copynumber: 2.4 Consensus size: 210
153935 CAAAGATTGG
153945 TGTTTCAAGAGAAACTGTCTCAAGAGAGACAAAATTTTATTTCAAGAGAAACTGTCTCAAGAGAG
1 TGTTTCAAGAGAAACTGTCTCAAGAGAGACAAAATTTT-TTTCAAGAGAAACTGTCTCAAGAGAG
*
154010 ACAAAATTTGTTTCAAGAGAAACTGTCTCAAGAGAGACAAAACTTAGTTCCAAAAGAAACTTTCT
65 ACAAAATTTGTTTCAAGAGAAACTGTCTCAAGAGAGACAAAACTTAGTTCCAAAAGAAACTGTCT
* *
154075 CAAGGGAGACGAAATTTGTTTCAAGGAAAACATATTCAAAGATTTTGTTTCAAAGG-AACTGTCT
130 CAAGGGAGACAAAATTTGTTTCAAGGAAAACAGATTCAAAGATTTTGTTTCAAAGGAAACTGTCT
154139 CAAGAGACACAAAACT
195 CAAGAGACACAAAACT
* * *
154155 TGTTTCAAGAG-AACTGTCTCAAGAGAGACAAAACTTTGTTTCAAGGGAAATTGTCTCAAGAGAG
1 TGTTTCAAGAGAAACTGTCTCAAGAGAGACAAAA-TTTTTTTCAAGAGAAACTGTCTCAAGAGAG
154219 ACAAAATTTGTTTCAAGAGAAACTGTCTCAAGAGAGACAAAACTTAGTTCCAAAAGAAACTGTCT
65 ACAAAATTTGTTTCAAGAGAAACTGTCTCAAGAGAGACAAAACTTAGTTCCAAAAGAAACTGTCT
* *
154284 CAAGGGAGACAAAATTTGTTTCAAGGAAAACAGATTCAAAGATTTTGTTTCAAGGGAAATTGTCT
130 CAAGGGAGACAAAATTTGTTTCAAGGAAAACAGATTCAAAGATTTTGTTTCAAAGGAAACTGTCT
* *
154349 CAAGAGAGACAAAATT
195 CAAGAGACACAAAACT
* * *
154365 TGTTTCAAGGGAAATTGTCTCAAGAGAGACAAAATTTGTTTT-AAGAAAAACTGTCTCAAGAGAG
1 TGTTTCAAGAGAAACTGTCTCAAGAGAGACAAAATTT-TTTTCAAGAGAAACTGTCTCAAGAGAG
*
154429 AC-AACTTTGTTT
65 ACAAAATTTGTTT
154441 GAGTAAATTA
Statistics
Matches: 265, Mismatches: 17, Indels: 9
0.91 0.06 0.03
Matches are distributed among these distances:
209 172 0.65
210 69 0.26
211 24 0.09
ACGTcount: A:0.40, C:0.14, G:0.19, T:0.27
Consensus pattern (210 bp):
TGTTTCAAGAGAAACTGTCTCAAGAGAGACAAAATTTTTTTCAAGAGAAACTGTCTCAAGAGAGA
CAAAATTTGTTTCAAGAGAAACTGTCTCAAGAGAGACAAAACTTAGTTCCAAAAGAAACTGTCTC
AAGGGAGACAAAATTTGTTTCAAGGAAAACAGATTCAAAGATTTTGTTTCAAAGGAAACTGTCTC
AAGAGACACAAAACT
Found at i:154226 original size:136 final size:138
Alignment explanation
Indices: 153974--154240 Score: 398
Period size: 136 Copynumber: 1.9 Consensus size: 138
153964 TCAAGAGAGA
* *
153974 CAAAATTTTATTTCAAGAGAAACTGTCTCAAGAGAGACAAAATTTGTTTCAAGAGAAACTGTCTC
1 CAAAATTTTATTTCAAGAGAAACTGTCTCAAGAGACACAAAACTTGTTTCAAGAGAAACTGTCTC
* *
154039 AAGAGAGACAAAACTTAGTTCCAAAAGAAACTTTCTCAAGGGAGACGAAATTTGTTTCAAG-GAA
66 AAGAGAGACAAAACTTAGTTCCAAAAGAAACTTTCTCAAGAGAGACAAAATTTGTTTCAAGAGAA
154103 AACATATT
131 AACATATT
* *
154111 CAAAGATTTTGTTTCAA-AGGAACTGTCTCAAGAGACACAAAACTTGTTTCAAGAG-AACTGTCT
1 CAAA-ATTTTATTTCAAGAGAAACTGTCTCAAGAGACACAAAACTTGTTTCAAGAGAAACTGTCT
* * **
154174 CAAGAGAGACAAAACTTTGTTTCAAGGGAAA-TTGTCTCAAGAGAGACAAAATTTGTTTCAAGAG
65 CAAGAGAGACAAAACTTAGTTCCAAAAGAAACTT-TCTCAAGAGAGACAAAATTTGTTTCAAGAG
154238 AAA
129 AAA
154241 CTGTCTCAAG
Statistics
Matches: 117, Mismatches: 10, Indels: 6
0.88 0.08 0.05
Matches are distributed among these distances:
135 2 0.02
136 61 0.52
137 43 0.37
138 11 0.09
ACGTcount: A:0.41, C:0.15, G:0.18, T:0.26
Consensus pattern (138 bp):
CAAAATTTTATTTCAAGAGAAACTGTCTCAAGAGACACAAAACTTGTTTCAAGAGAAACTGTCTC
AAGAGAGACAAAACTTAGTTCCAAAAGAAACTTTCTCAAGAGAGACAAAATTTGTTTCAAGAGAA
AACATATT
Found at i:154351 original size:15 final size:15
Alignment explanation
Indices: 154328--154388 Score: 50
Period size: 15 Copynumber: 3.7 Consensus size: 15
154318 TTCAAAGATT
*
154328 TTGTTTCAAGGGAAA
1 TTGTCTCAAGGGAAA
154343 TTGTCTCAAGAGAGACAAAA
1 TTGTCTCAAG-G-G---AAA
*
154363 TTTGTTTCAAGGGAAA
1 -TTGTCTCAAGGGAAA
154379 TTGTCTCAAG
1 TTGTCTCAAG
154389 AGAGACAAAA
Statistics
Matches: 37, Mismatches: 3, Indels: 12
0.71 0.06 0.23
Matches are distributed among these distances:
15 18 0.49
16 4 0.11
17 1 0.03
19 1 0.03
20 4 0.11
21 9 0.24
ACGTcount: A:0.34, C:0.11, G:0.23, T:0.31
Consensus pattern (15 bp):
TTGTCTCAAGGGAAA
Found at i:154355 original size:138 final size:136
Alignment explanation
Indices: 154189--154440 Score: 407
Period size: 138 Copynumber: 1.8 Consensus size: 136
154179 GAGACAAAAC
154189 TTTGTTTCAAGGGAAATTGTCTCAAGAGAGACAAAATTTGTTTCAAGAGAAACTGTCTCAAGAGA
1 TTTGTTTCAAGGGAAATTGTCTCAAGAGAGACAAAATTTGTTTCAAGAGAAACTGTCTCAAGAGA
*
154254 GACAAAACTTAGTTCCAA-AAGAAACTGTCTCAAGGGAGACAAAATTTGTTTCAAGGAAAACAGA
66 GACAAAA-TTAGTTCCAAGAA-AAACTGTCTCAAGAGAGAC-AAATTTGTTTCAAGGAAAACAGA
154318 TTCAAAGAT
128 TTCAAAGAT
* *
154327 TTTGTTTCAAGGGAAATTGTCTCAAGAGAGACAAAATTTGTTTCAAGGGAAATTGTCTCAAGAGA
1 TTTGTTTCAAGGGAAATTGTCTCAAGAGAGACAAAATTTGTTTCAAGAGAAACTGTCTCAAGAGA
* ** *
154392 GACAAAATTTGTTTTAAGAAAAACTGTCTCAAGAGAGACAACTTTGTTT
66 GACAAAATTAGTTCCAAGAAAAACTGTCTCAAGAGAGACAAATTTGTTT
154441 GAGTAAATTA
Statistics
Matches: 106, Mismatches: 7, Indels: 4
0.91 0.06 0.03
Matches are distributed among these distances:
136 9 0.08
137 25 0.24
138 72 0.68
ACGTcount: A:0.39, C:0.13, G:0.20, T:0.28
Consensus pattern (136 bp):
TTTGTTTCAAGGGAAATTGTCTCAAGAGAGACAAAATTTGTTTCAAGAGAAACTGTCTCAAGAGA
GACAAAATTAGTTCCAAGAAAAACTGTCTCAAGAGAGACAAATTTGTTTCAAGGAAAACAGATTC
AAAGAT
Found at i:154372 original size:21 final size:21
Alignment explanation
Indices: 154343--154403 Score: 71
Period size: 21 Copynumber: 3.2 Consensus size: 21
154333 TCAAGGGAAA
154343 TTGTCTCAAGAGAGACAAAAT
1 TTGTCTCAAGAGAGACAAAAT
*
154364 TTGTTTCAAG-G-G---AAA-
1 TTGTCTCAAGAGAGACAAAAT
154379 TTGTCTCAAGAGAGACAAAAT
1 TTGTCTCAAGAGAGACAAAAT
154400 TTGT
1 TTGT
154404 TTTAAGAAAA
Statistics
Matches: 32, Mismatches: 2, Indels: 12
0.70 0.04 0.26
Matches are distributed among these distances:
15 9 0.28
16 4 0.12
17 1 0.03
19 1 0.03
20 4 0.12
21 13 0.41
ACGTcount: A:0.38, C:0.11, G:0.21, T:0.30
Consensus pattern (21 bp):
TTGTCTCAAGAGAGACAAAAT
Found at i:154410 original size:21 final size:21
Alignment explanation
Indices: 154173--154238 Score: 72
Period size: 21 Copynumber: 3.4 Consensus size: 21
154163 GAGAACTGTC
154173 TCAAGAGAGACAAAACTTTGTT
1 TCAAGAGAGACAAAA-TTTGTT
*
154195 TCAAG-G-G---AAA-TTGTC
1 TCAAGAGAGACAAAATTTGTT
154210 TCAAGAGAGACAAAATTTGTT
1 TCAAGAGAGACAAAATTTGTT
154231 TCAAGAGA
1 TCAAGAGA
154239 AACTGTCTCA
Statistics
Matches: 36, Mismatches: 2, Indels: 13
0.71 0.04 0.25
Matches are distributed among these distances:
15 9 0.25
16 1 0.03
17 4 0.11
20 4 0.11
21 13 0.36
22 5 0.14
ACGTcount: A:0.41, C:0.12, G:0.21, T:0.26
Consensus pattern (21 bp):
TCAAGAGAGACAAAATTTGTT
Found at i:154455 original size:34 final size:34
Alignment explanation
Indices: 154340--154464 Score: 144
Period size: 36 Copynumber: 3.6 Consensus size: 34
154330 GTTTCAAGGG
*
154340 AAATTGTCTCAAGAGAGACAAAATTTGTTTCAAGGG
1 AAATTGTCTCAAGAGAGACAAAATTTGTTT-AA-GA
154376 AAATTGTCTCAAGAGAGACAAAATTTGTTTTAAGAA
1 AAATTGTCTCAAGAGAGACAAAATTTG-TTTAAG-A
* * * *
154412 AAACTGTCTCAAGAGAGAC-AACTTTGTTTGAGT
1 AAATTGTCTCAAGAGAGACAAAATTTGTTTAAGA
*
154445 AAATTAGTCTCAAGCGAGAC
1 AAATT-GTCTCAAGAGAGAC
154465 TACCCCTTGT
Statistics
Matches: 79, Mismatches: 7, Indels: 8
0.84 0.07 0.09
Matches are distributed among these distances:
33 4 0.05
34 18 0.23
35 7 0.09
36 47 0.59
37 3 0.04
ACGTcount: A:0.39, C:0.13, G:0.20, T:0.28
Consensus pattern (34 bp):
AAATTGTCTCAAGAGAGACAAAATTTGTTTAAGA
Done.