Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01005498.1 Hibiscus syriacus cultivar Beakdansim tig00012651_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  70179

Tables:   1   

This is table  1  of  1  ( 24 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3694--3782
29
3.0
29
70
15
74
43
3
21
31
1.69
3697--3857
60
2.7
60
81
10
188
47
4
15
32
1.65
21528--21669
20
6.9
21
73
7
139
16
20
24
38
1.93
21528--21669
41
3.5
41
92
3
241
16
20
24
38
1.93
21528--21710
82
2.2
83
92
3
300
17
20
24
38
1.93
21658--21729
22
3.4
22
73
11
87
18
19
25
37
1.94
21679--21744
19
3.3
19
72
12
69
18
19
21
40
1.91
21528--21752
123
1.8
121
83
9
294
17
19
23
39
1.92
21528--21735
41
5.1
40
88
8
235
17
20
23
38
1.93
21535--21735
82
2.5
80
88
7
264
17
20
23
38
1.93
22350--22430
6
13.7
6
98
1
155
0
17
50
32
1.46
24885--24974
2
45.0
2
100
0
180
50
0
0
50
1.00
25105--25146
16
2.7
15
80
20
50
66
4
9
19
1.38
26737--26859
53
2.3
53
85
0
165
25
27
18
28
1.98
27295--27577
80
3.5
80
91
0
449
28
21
18
31
1.97
27950--28066
38
3.2
38
79
9
161
22
22
21
34
1.97
38293--38355
23
2.8
23
87
2
74
11
9
19
60
1.57
38305--38355
23
2.2
23
92
0
84
13
11
15
58
1.63
38319--38392
34
2.1
36
87
7
107
10
12
18
58
1.63
38595--38684
46
1.9
47
88
2
137
36
12
6
44
1.68
38892--38924
16
2.1
16
100
0
66
57
24
12
6
1.57
38993--39037
16
2.8
16
96
0
81
53
26
13
6
1.64
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
49264--49293
2
15.0
2
100
0
60
50
0
0
50
1.00
55609--55657
20
2.4
20
86
10
64
48
0
4
46
1.20

Tables:   1

The End!