genome.fa.s5499.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01005499.1 Hibiscus syriacus cultivar Beakdansim tig00012653_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  102674

Tables:   1   

This is table  1  of  1  ( 88 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
702--756	22	2.5	22	88	2	85	14	21	43	20	1.87
702--763	22	2.9	22	74	11	65	12	27	38	20	1.90
798--839	21	2.0	21	90	0	66	21	26	33	19	1.97
2609--2636	2	14.0	2	100	0	56	50	0	0	50	1.00
5163--5216	26	2.0	27	96	3	101	22	38	9	29	1.85
5401--5589	45	4.2	45	91	3	274	32	48	7	12	1.68
17003--17031	13	2.1	14	93	6	51	58	0	0	41	0.98
18990--19032	20	2.2	20	87	8	61	46	0	6	46	1.30
19353--19404	20	2.6	20	96	0	95	38	26	13	21	1.90
19460--19653	20	9.6	20	76	8	76	35	25	19	19	1.95
19456--19653	40	5.0	39	81	4	200	35	26	19	19	1.95
19460--19652	60	3.2	60	83	0	251	35	25	19	19	1.95
20033--20103	33	2.2	33	92	0	115	11	22	18	47	1.80
20224--20278	14	3.6	14	73	21	56	41	23	25	9	1.83
20224--20294	33	2.2	33	94	0	124	43	25	22	8	1.81
20290--20387	19	5.7	19	70	22	81	10	24	22	42	1.84
20312--20401	14	5.7	14	74	23	81	8	25	23	42	1.83
20295--20409	33	3.5	33	95	0	212	9	24	20	45	1.81
22099--22563	91	5.1	93	97	1	877	22	12	18	46	1.83
22099--22563	184	2.5	185	98	1	891	22	12	18	46	1.83
22607--22734	19	7.3	19	73	17	116	45	28	17	8	1.78
22643--22734	33	2.8	32	90	6	141	45	28	18	7	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
22730--22864	19	7.6	19	75	16	128	11	19	23	45	1.82
22752--22808	14	3.7	14	77	20	60	10	21	22	45	1.82
22735--22827	33	2.8	33	95	0	168	10	20	21	47	1.80
24764--24799	14	2.6	14	95	0	63	33	0	22	44	1.53
24906--25007	19	5.6	19	84	13	151	44	17	23	14	1.86
25034--25286	19	14.4	19	79	17	298	14	20	18	46	1.83
25034--25286	70	3.6	71	81	14	323	14	20	18	46	1.83
25012--25286	89	3.2	90	86	9	371	14	20	18	46	1.84
25034--25258	52	4.2	53	87	9	254	14	21	17	46	1.83
27563--27587	12	2.1	12	100	0	50	0	28	0	72	0.86
27762--27808	24	2.0	24	87	8	69	38	21	14	25	1.92
28490--28858	20	18.5	20	86	5	451	20	18	26	34	1.96
32392--32442	18	2.9	18	72	19	54	31	0	1	66	1.03
35119--35190	24	3.0	24	75	13	76	52	11	1	34	1.45
41423--41569	67	2.2	65	78	12	149	47	4	9	38	1.55
42278--42376	19	5.1	19	67	13	58	58	4	4	33	1.35
49214--49256	23	1.9	22	90	4	68	69	4	11	13	1.33
49214--49259	11	4.0	12	77	8	51	71	4	10	13	1.27
50880--51027	66	2.3	66	93	1	253	29	27	26	16	1.97
50986--51026	20	2.0	20	85	0	55	21	29	31	17	1.96
51619--51677	23	2.6	23	94	2	102	18	27	30	23	1.98
57716--57758	21	2.0	21	81	0	50	30	30	25	13	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
57738--57887	66	2.3	67	94	1	257	29	28	26	16	1.96
58479--58537	23	2.6	23	94	2	102	18	27	30	23	1.98
67624--67724	53	1.9	53	93	4	177	32	3	14	48	1.63
67693--67732	20	2.0	20	95	0	71	37	5	15	42	1.68
70827--70877	2	25.5	2	100	0	102	50	0	49	0	1.00
71371--71409	19	2.1	19	85	0	51	46	2	2	48	1.29
77484--77542	20	3.0	20	89	0	100	49	8	18	23	1.75
77481--77550	20	3.5	20	86	1	97	48	10	20	21	1.78
78524--78565	15	2.6	17	77	14	52	35	7	2	54	1.41
78533--78565	15	2.2	15	94	0	57	36	9	3	51	1.49
78911--79037	51	2.5	50	81	5	148	37	11	10	40	1.76
79315--79341	2	13.5	2	100	0	54	48	0	0	51	1.00
81083--81195	56	2.0	56	89	0	172	28	13	30	28	1.94
83030--83066	16	2.2	17	90	4	58	70	2	0	27	1.01
91071--91121	24	2.2	23	82	3	57	49	1	1	47	1.24
91655--91720	35	2.0	33	83	13	84	30	1	7	60	1.33
91692--91742	16	3.5	15	75	20	54	41	0	0	58	0.98
91989--92048	31	2.0	31	90	3	95	50	8	15	26	1.72
95325--95571	40	6.2	41	82	5	285	36	23	19	20	1.95
95363--95573	20	10.6	20	74	9	180	36	24	18	20	1.95
95363--95571	79	2.6	81	84	4	280	36	23	18	20	1.95
95363--95573	60	3.5	61	76	7	234	36	24	18	20	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
96128--96206	20	3.9	21	86	5	94	51	17	16	13	1.76
96226--96282	19	2.9	19	86	2	78	17	22	21	38	1.93
96227--96304	39	2.0	39	84	0	102	15	24	19	41	1.90
96240--96295	20	2.9	18	82	15	67	16	25	21	37	1.93
97985--98363	95	4.1	93	95	2	636	21	12	18	46	1.82
97985--98363	189	2.0	185	92	3	634	21	12	18	46	1.82
98466--98490	12	2.1	12	100	0	50	44	24	24	8	1.80
98510--98569	17	3.6	18	74	19	67	45	31	15	8	1.75
98450--98568	32	3.8	32	79	7	104	44	25	20	10	1.82
98579--98662	19	4.6	19	71	16	61	16	22	22	38	1.93
98617--98662	19	2.4	19	88	3	65	21	19	23	34	1.96
99135--99233	21	4.7	21	74	6	76	23	33	20	23	1.97
99132--99239	42	2.6	41	75	11	112	21	35	19	24	1.96
100700--100795	33	2.8	33	90	3	138	41	20	23	13	1.88
100733--100800	19	3.8	19	72	21	74	45	19	22	13	1.84
100810--100886	33	2.3	34	91	4	122	14	23	18	44	1.86
102044--102084	22	1.9	21	85	5	55	56	2	0	41	1.13
102411--102620	20	10.6	20	72	14	150	19	18	23	39	1.92
102416--102620	40	5.2	39	81	10	224	19	17	23	39	1.92
102452--102602	59	2.5	59	78	5	153	18	17	25	39	1.92
102573--102620	18	2.5	19	83	12	55	14	16	22	45	1.84
102409--102620	79	2.7	79	79	12	222	19	17	23	38	1.93

Tables:   1

The End!