genome.fa.s55.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000055.1 Hibiscus syriacus cultivar Beakdansim tig00000082_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  81418

Tables:   1   

This is table  1  of  1  ( 55 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
352--414	2	33.0	2	90	9	105	50	0	0	49	1.00
3361--3395	8	4.5	8	89	3	54	0	17	0	82	0.66
3361--3395	15	2.2	16	95	5	63	0	17	0	82	0.66
9075--9132	25	2.3	25	90	0	89	32	29	6	31	1.84
16426--16456	14	2.2	14	94	0	53	77	6	3	12	1.08
17460--17525	2	33.5	2	96	3	125	50	0	0	50	1.00
18229--18278	3	16.3	3	91	4	82	66	0	0	34	0.92
18433--18538	56	1.9	55	92	1	176	21	20	21	35	1.96
18587--19421	55	15.3	54	79	9	583	28	20	19	31	1.97
18582--19495	110	8.3	109	80	8	694	28	20	19	31	1.97
18602--19273	273	2.5	273	80	8	726	29	19	20	31	1.97
19113--19495	55	7.0	55	85	1	471	29	21	18	30	1.97
19499--19944	36	12.3	36	87	2	608	24	20	16	38	1.92
21635--21759	29	4.3	29	93	0	223	38	21	8	31	1.84
24698--25048	55	6.4	55	88	0	450	30	18	20	30	1.96
24722--25116	55	7.2	55	85	3	228	32	17	20	30	1.95
25443--25567	45	2.8	44	87	4	178	46	6	20	26	1.75
31659--32000	59	5.8	59	84	3	404	36	10	23	29	1.88
31659--32210	177	3.1	173	77	10	499	36	11	23	28	1.89
31650--32212	118	4.8	117	76	10	466	36	11	23	28	1.89
31967--32161	60	3.2	60	84	5	236	36	12	21	28	1.90
31651--32212	59	9.5	58	80	6	401	36	11	22	29	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32294--32698	44	9.0	44	90	5	542	40	6	19	33	1.79
33840--33882	22	2.0	22	100	0	86	16	9	32	41	1.80
33844--33894	22	2.3	22	90	6	77	17	9	29	43	1.81
34095--34155	23	2.7	23	80	12	63	27	18	3	50	1.62
34106--34155	23	2.2	23	86	10	68	32	20	2	46	1.62
34106--34158	22	2.4	22	81	12	63	30	20	1	47	1.61
37385--37546	29	5.6	29	83	5	175	32	9	9	48	1.68
37385--37551	58	2.9	58	84	1	210	31	10	8	49	1.68
42527--42554	2	14.0	2	100	0	56	50	0	0	50	1.00
47211--47263	23	2.3	23	87	6	72	39	0	5	54	1.24
47283--47318	18	2.1	18	89	5	56	36	5	2	55	1.38
47394--47422	14	2.0	15	93	6	51	34	0	3	62	1.12
47741--47765	13	1.9	13	100	0	50	48	0	52	0	1.00
48796--48972	59	3.0	59	93	0	293	33	12	20	32	1.91
49868--50066	54	3.7	54	90	0	308	31	15	16	36	1.90
50134--50165	15	2.1	15	100	0	64	50	18	6	25	1.70
52555--52582	10	2.8	10	100	0	56	60	10	17	10	1.57
60251--60282	16	2.1	16	94	5	57	0	15	0	84	0.63
65712--65873	29	5.6	29	83	5	175	32	9	9	48	1.68
65712--65878	58	2.9	58	84	1	210	31	10	8	49	1.68
70854--70879	2	13.0	2	100	0	52	50	0	0	50	1.00
75413--75463	23	2.1	25	86	13	72	41	1	1	54	1.22
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
75526--75578	23	2.3	23	87	6	72	39	0	5	54	1.24
75597--75632	18	2.1	18	89	5	56	36	5	2	55	1.38
75708--75736	14	2.0	15	93	6	51	34	0	3	62	1.12
76049--76073	13	1.9	13	100	0	50	48	0	52	0	1.00
76738--76777	19	2.1	19	100	0	80	25	15	35	25	1.94
77103--77275	58	3.0	58	87	5	244	32	13	20	32	1.92
77486--77895	68	6.0	68	90	0	604	30	14	24	29	1.95
77829--78040	81	2.6	81	91	0	352	33	14	23	28	1.94
78033--78094	29	2.1	30	90	3	99	45	12	17	24	1.84
78232--78289	2	29.5	2	96	3	109	51	0	0	48	1.00
79330--79362	17	1.9	17	88	11	50	42	12	3	42	1.57

Tables:   1

The End!