genome.fa.s550.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000550.1 Hibiscus syriacus cultivar Beakdansim tig00001071_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  77795

Tables:   1   

This is table  1  of  1  ( 41 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2303--2344	16	2.7	15	75	17	50	42	4	0	52	1.22
2363--2404	21	2.0	21	85	0	57	54	2	2	40	1.26
2476--2518	13	3.2	13	80	12	52	72	0	0	27	0.85
4727--4751	6	4.2	6	100	0	50	0	20	16	64	1.30
5518--5643	60	2.1	61	79	10	134	41	3	24	30	1.73
7534--7597	29	2.2	29	88	0	92	51	0	31	17	1.45
7534--7801	23	11.5	23	75	12	167	48	2	27	21	1.62
7580--7801	68	3.3	68	76	13	176	47	2	26	22	1.65
7560--7708	49	3.1	47	79	13	123	47	1	26	24	1.60
7752--7803	19	2.7	18	82	11	68	50	0	30	19	1.48
7564--7772	117	1.8	117	82	7	275	47	2	26	23	1.66
9229--9270	22	1.9	22	85	9	59	9	7	11	71	1.31
13326--13547	31	7.2	31	95	0	390	34	16	10	38	1.83
13444--13527	15	5.5	15	64	25	50	32	15	13	39	1.86
15796--15926	31	4.2	31	78	10	142	30	19	19	30	1.96
15910--15980	30	2.4	30	90	0	106	26	19	21	32	1.97
17017--17194	64	2.8	65	84	2	225	26	19	21	32	1.97
17080--17241	64	2.5	64	86	4	211	27	20	19	32	1.97
20299--20551	31	8.2	31	95	0	443	33	15	11	39	1.83
21061--21238	64	2.8	65	82	2	207	26	19	21	32	1.97
21124--21269	64	2.3	64	86	4	197	27	20	18	33	1.96
26723--26752	12	2.5	12	94	0	51	10	16	50	23	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26816--26853	2	19.0	2	100	0	76	50	0	0	50	1.00
29465--29522	3	19.3	3	92	0	98	36	0	29	34	1.58
29667--29749	25	3.3	24	72	11	69	20	3	6	69	1.25
30177--30234	20	2.7	20	86	10	71	27	22	24	25	2.00
31315--31443	30	4.3	30	90	1	177	23	17	24	34	1.96
34854--34976	64	1.9	63	85	4	167	34	18	21	25	1.96
34858--34995	64	2.2	63	80	7	154	33	20	21	24	1.97
35003--35040	20	1.9	20	94	0	67	28	21	23	26	1.99
35775--35845	2	35.5	2	97	0	133	49	0	0	50	1.00
36166--36294	30	4.3	30	87	1	150	25	18	20	34	1.96
38143--38260	60	2.0	59	85	5	157	25	20	25	28	1.99
39212--39277	24	2.8	24	90	2	107	53	1	24	21	1.55
50543--50581	16	2.4	16	100	0	78	41	20	0	38	1.53
54725--54786	33	1.9	33	93	3	108	6	24	8	61	1.48
59738--59784	21	2.2	22	92	7	80	42	0	0	57	0.98
59747--59801	27	2.0	27	82	6	67	41	5	0	52	1.24
68850--68878	15	2.0	15	93	6	51	31	6	0	62	1.22
71990--72015	13	2.0	13	100	0	52	46	0	23	30	1.53
74334--74385	21	2.5	19	77	20	50	63	3	0	32	1.12

Tables:   1

The End!