Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01005501.1 Hibiscus syriacus cultivar Beakdansim tig00012666_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  75469

Tables:   1   

This is table  1  of  1  ( 40 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4381--4435
4
13.8
4
85
11
53
69
0
0
30
0.89
4381--4438
21
2.7
21
82
17
75
68
0
0
31
0.89
4372--4439
21
3.3
21
72
24
65
69
0
0
30
0.89
8168--8212
20
2.3
19
85
7
63
48
2
0
48
1.13
19781--19835
27
2.0
27
86
6
76
54
18
3
23
1.59
27699--27744
23
2.0
23
86
0
65
19
23
23
32
1.97
28530--28587
21
2.8
21
94
0
107
27
24
25
22
2.00
37245--37486
129
1.9
129
82
1
306
43
9
16
31
1.79
38337--38364
2
14.0
2
100
0
56
50
0
0
50
1.00
39347--39447
3
32.7
3
80
9
114
38
0
0
61
0.96
44860--44891
15
2.1
15
94
0
55
25
18
9
46
1.79
52306--52349
6
7.2
6
80
14
54
81
0
18
0
0.68
52303--52371
23
3.0
23
85
12
97
81
0
18
0
0.70
52322--52372
11
4.8
10
79
16
50
82
0
17
0
0.67
52303--52351
13
3.9
13
80
17
59
81
0
18
0
0.69
52306--52369
15
3.9
16
82
14
62
81
0
18
0
0.70
53484--53914
115
3.7
115
97
0
792
32
13
21
32
1.92
54635--54881
113
2.2
113
95
0
449
40
13
17
28
1.88
54783--54953
72
2.4
73
94
3
292
36
16
15
30
1.90
54670--55157
185
2.6
185
95
1
852
38
15
16
29
1.90
54856--55066
113
1.9
112
94
3
370
39
15
17
28
1.89
54968--55139
73
2.4
73
92
2
274
36
16
15
31
1.90
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
55058--55250
93
2.1
93
87
1
271
36
16
17
29
1.92
55151--55503
116
3.1
116
95
2
626
36
13
20
29
1.91
55442--55521
39
2.0
41
90
7
128
47
10
23
18
1.79
55776--55880
3
34.7
3
84
5
140
39
0
0
60
0.97
57389--57451
17
3.8
16
74
15
56
38
0
1
60
1.07
57387--57433
19
2.5
18
86
13
60
34
0
2
63
1.06
57389--57451
16
3.7
18
74
15
55
38
0
1
60
1.07
61198--61256
19
3.2
19
92
2
93
15
30
33
20
1.93
66988--67067
19
4.2
19
96
1
142
20
25
28
26
1.99
68185--68315
29
4.4
29
70
15
81
21
9
10
58
1.61
69599--69651
27
1.9
28
88
3
81
15
11
13
60
1.59
69652--69710
27
2.2
27
87
0
82
16
20
8
54
1.68
71972--72289
118
2.8
117
88
5
427
34
22
18
24
1.96
72546--72665
43
2.8
42
85
2
150
28
31
18
21
1.97
72761--72850
37
2.5
37
92
1
146
24
24
15
35
1.94
72710--72903
105
1.9
102
84
9
259
27
20
13
37
1.91
73239--73328
3
29.7
3
80
6
92
38
1
2
57
1.18
73621--74031
145
2.8
145
81
2
459
32
21
26
20
1.97

Tables:   1

The End!