genome.fa.s5502.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01005502.1 Hibiscus syriacus cultivar Beakdansim tig00012669_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  122172

Tables:   1   

This is table  1  of  1  ( 62 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5618--5663	23	2.0	23	91	0	74	28	26	23	21	1.99
5641--6088	149	3.0	148	96	2	816	35	21	15	27	1.93
12407--12452	23	2.0	23	91	0	74	28	26	23	21	1.99
12430--13011	149	3.9	149	97	0	1105	35	20	15	28	1.93
12430--13009	296	2.0	296	98	0	1115	35	20	15	28	1.93
13493--13651	63	2.5	63	85	2	203	27	21	19	32	1.97
13619--13656	19	2.0	20	94	5	69	26	28	15	28	1.96
15282--15348	24	2.8	24	81	0	89	23	26	20	28	1.99
22059--22160	34	2.8	37	88	10	158	43	14	13	28	1.84
22059--22194	37	3.8	35	83	9	159	41	13	13	30	1.84
22549--22608	17	3.6	17	80	13	63	30	3	3	63	1.27
26232--26283	16	3.2	16	79	15	54	78	7	13	0	0.94
26237--26316	24	3.2	24	77	12	65	76	7	16	0	1.00
26965--27013	22	2.2	22	92	0	80	32	24	14	28	1.94
27426--27461	18	2.0	18	94	0	63	16	8	33	41	1.78
27959--28005	21	2.2	22	88	7	71	27	19	10	42	1.84
27984--28158	67	2.6	65	82	6	199	32	21	9	36	1.85
28762--29411	100	6.3	100	88	5	931	32	26	18	22	1.97
28762--29411	205	3.2	205	92	1	1043	32	26	18	22	1.97
29958--30059	34	2.8	37	89	10	167	43	14	14	27	1.85
29958--30093	37	3.8	35	84	9	168	41	13	14	29	1.85
30447--30488	17	2.5	17	84	3	59	26	4	2	66	1.23
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40546--40587	18	2.1	21	87	12	63	23	0	2	73	0.94
40694--40726	3	11.0	3	100	0	66	33	0	0	66	0.92
45253--45291	18	2.2	18	81	4	53	17	28	23	30	1.97
56839--56996	21	7.8	20	71	7	77	38	24	17	19	1.92
56961--57015	20	2.8	19	80	5	65	43	25	18	12	1.85
57002--57232	20	11.6	20	82	5	252	35	25	17	21	1.95
57915--57961	24	2.0	24	87	8	69	25	14	21	38	1.92
58939--59012	19	4.2	19	75	16	77	45	28	17	8	1.77
58984--59076	33	2.8	33	93	0	159	47	21	19	11	1.81
59003--59059	14	3.7	14	77	20	60	45	22	21	10	1.82
58966--59081	19	6.6	19	74	18	108	45	23	19	11	1.82
59077--59224	19	8.3	19	78	15	163	8	16	29	45	1.76
59077--59207	33	3.8	32	86	9	172	6	17	29	46	1.74
59272--59832	93	6.1	93	99	0	1099	46	19	12	21	1.83
61535--61624	14	5.7	14	72	23	72	44	22	24	8	1.81
61527--61641	33	3.5	33	100	0	230	46	20	23	9	1.79
61549--61646	19	5.7	19	71	22	99	44	21	23	10	1.82
61642--61700	19	3.4	18	73	22	54	8	18	25	47	1.77
61658--61714	14	3.7	14	77	20	60	8	22	22	45	1.80
61642--61722	33	2.5	33	93	0	135	8	20	22	48	1.77
61698--61775	41	1.9	41	97	0	147	12	25	16	44	1.83
61699--61774	21	3.7	21	83	3	109	11	25	17	46	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
61853--61923	33	2.2	33	92	0	115	47	18	22	11	1.80
62103--62157	22	2.5	22	81	0	74	20	16	40	23	1.91
62304--62418	20	5.7	20	81	6	151	21	18	26	33	1.96
62303--62437	40	3.3	40	81	5	173	20	17	25	36	1.94
63728--63764	19	2.0	18	94	5	65	29	5	27	37	1.79
68312--68358	25	1.9	25	86	4	69	53	12	4	29	1.58
82198--82253	26	2.2	26	87	6	78	51	8	8	30	1.64
82808--82875	5	13.8	5	71	3	57	26	1	1	70	1.04
82808--82857	20	2.5	20	96	0	91	28	0	2	70	0.99
85594--85735	31	4.8	31	72	19	92	48	0	0	50	1.11
85609--85652	22	2.0	23	86	4	63	45	0	0	54	0.99
85616--85726	52	2.1	51	81	14	129	49	0	0	48	1.13
85594--85777	29	6.1	29	69	17	99	48	0	1	49	1.12
85703--85776	19	3.9	19	71	19	57	52	0	1	45	1.09
85739--85806	11	6.0	11	70	16	50	48	1	0	50	1.10
85752--85787	12	2.8	14	80	20	51	52	0	0	47	1.00
85752--85815	23	2.7	23	85	4	74	51	1	0	46	1.10
86116--86164	15	3.3	15	91	0	80	42	16	4	36	1.67

Tables:   1

The End!