genome.fa.s5503.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01005503.1 Hibiscus syriacus cultivar Beakdansim tig00012683_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  167625

Tables:   1   

This is table  1  of  1  ( 88 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
980--1008	1	29.0	1	100	0	58	0	0	0	100	0.00
7054--7120	28	2.3	29	82	7	84	55	22	1	20	1.52
19528--19565	20	1.9	20	100	0	76	28	31	21	18	1.97
21496--21548	2	26.5	2	100	0	106	50	0	0	49	1.00
21548--21595	2	24.0	2	100	0	96	50	0	50	0	1.00
22390--22429	18	2.2	19	86	4	55	47	2	7	42	1.45
23982--24019	18	2.2	17	90	4	58	76	2	0	21	0.91
24245--24307	28	2.2	28	76	15	67	77	6	3	12	1.07
24179--24404	112	2.1	104	82	12	280	73	8	5	11	1.23
24284--24404	56	2.2	55	71	19	99	76	6	4	13	1.14
24343--24402	25	2.4	25	80	5	68	78	3	1	16	0.97
26384--26433	19	2.5	20	90	3	75	30	2	10	58	1.42
26511--27932	198	7.1	199	97	1	2663	37	14	15	31	1.88
26511--27932	397	3.6	399	98	0	2755	37	14	15	31	1.88
29400--30109	184	3.9	184	96	0	1298	35	14	16	33	1.89
32647--32710	23	2.8	23	87	0	92	35	6	20	37	1.78
32647--32719	23	3.2	23	82	7	85	34	5	20	39	1.76
33049--33112	23	2.8	23	87	0	92	35	6	20	37	1.78
33049--33121	23	3.2	23	82	7	85	34	5	20	39	1.76
32566--33759	403	3.0	404	98	0	2281	38	7	12	40	1.73
33453--33515	23	2.8	23	85	2	83	34	6	20	38	1.78
33453--33524	23	3.2	23	84	5	76	33	5	20	40	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33791--33841	25	2.0	25	92	0	84	33	7	19	39	1.81
34090--34126	18	2.1	18	89	0	56	32	5	10	51	1.60
34082--34128	24	2.0	24	86	0	67	34	4	14	46	1.64
34383--34469	39	2.2	39	95	0	156	48	20	13	17	1.81
34873--34934	21	2.8	23	80	7	74	35	6	20	37	1.79
34895--34943	23	2.1	23	88	7	73	34	2	20	42	1.64
34879--34948	21	3.2	21	75	15	61	32	5	21	40	1.77
35720--35779	31	1.9	31	93	6	104	41	5	10	43	1.60
36122--36163	21	2.0	21	85	4	57	28	0	7	64	1.20
36334--36395	18	3.2	20	78	19	62	61	0	1	37	1.06
36391--36454	24	2.5	24	82	14	67	53	1	1	43	1.19
45366--45403	9	3.7	10	83	16	51	78	13	7	0	0.94
54647--54705	30	2.0	30	93	3	102	33	6	16	42	1.75
54781--54879	21	4.8	20	81	10	119	23	36	19	21	1.95
54900--54973	20	3.7	20	89	3	112	17	28	24	29	1.97
54900--54982	41	2.0	41	88	4	123	18	27	26	27	1.98
55334--55403	34	2.1	32	86	5	95	31	15	30	22	1.95
56259--56306	19	2.5	20	82	3	62	52	6	12	29	1.63
58061--58117	21	2.7	21	91	0	96	28	24	22	24	2.00
66135--66175	10	4.2	10	81	6	57	39	0	19	41	1.52
66128--66170	19	2.3	18	80	11	50	48	0	16	34	1.46
66716--66812	21	4.6	21	72	10	90	22	35	18	23	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
66756--66812	22	2.7	23	78	10	68	24	31	21	22	1.98
66833--66906	20	3.7	19	80	10	85	18	25	24	31	1.98
68899--68995	21	4.5	22	74	16	87	51	6	2	40	1.39
68974--69064	17	5.5	16	71	19	64	49	5	2	42	1.38
68946--69066	19	6.9	18	72	20	82	50	5	1	42	1.36
69016--69077	19	3.0	20	83	11	81	50	6	1	41	1.38
71577--71626	25	2.0	26	84	4	66	56	18	2	24	1.52
73969--74058	44	2.0	44	86	6	126	36	14	7	41	1.75
75228--75262	17	1.9	19	88	11	56	45	8	2	42	1.49
75279--75365	43	2.0	44	93	2	149	31	4	3	60	1.33
76153--76313	79	2.1	78	87	5	227	30	13	8	47	1.72
80978--81039	23	2.7	23	82	0	88	30	27	25	16	1.96
85363--85424	23	2.7	23	82	0	88	30	27	25	16	1.96
86403--86480	20	3.8	20	75	18	70	24	25	19	30	1.98
87807--87856	24	2.1	24	85	7	66	58	12	2	28	1.45
93262--93311	24	2.1	24	85	7	66	58	12	2	28	1.45
103382--103410	3	9.7	3	100	0	58	31	0	0	68	0.89
106147--106564	220	1.9	219	94	1	739	47	14	16	21	1.82
106723--106768	18	2.8	16	83	6	56	34	4	30	30	1.77
124808--124849	17	2.6	16	75	10	50	47	2	21	28	1.63
126084--126222	70	2.0	70	84	2	181	31	7	25	35	1.85
127826--127898	32	2.3	31	78	2	83	31	34	20	13	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
129331--129384	22	2.5	22	87	0	81	44	14	18	22	1.86
129331--129391	10	5.7	10	75	11	50	44	14	18	22	1.86
129332--129405	32	2.2	33	85	4	96	41	16	18	22	1.89
130069--130224	31	5.0	31	90	1	233	37	20	19	21	1.94
131483--131523	21	2.0	21	85	0	55	29	29	24	17	1.97
133021--133335	149	2.1	149	95	2	562	26	18	21	33	1.96
136608--136648	21	2.0	21	85	0	55	29	29	24	17	1.97
138150--138464	149	2.1	149	95	2	562	26	18	20	33	1.96
138432--138476	23	2.0	23	90	0	72	22	26	26	24	2.00
144462--144528	29	2.3	29	100	0	134	25	25	4	44	1.72
148839--148870	6	5.3	6	100	0	64	0	50	0	50	1.00
149783--149811	2	14.5	2	100	0	58	51	0	0	48	1.00
149878--150104	118	1.9	119	94	2	402	53	4	5	36	1.45
150493--150553	25	2.4	25	100	0	122	29	31	8	31	1.86
150681--150728	24	2.0	24	95	0	87	35	12	18	33	1.89
153225--153332	45	2.4	46	84	7	141	30	21	19	28	1.97
153308--153350	19	2.4	19	84	7	54	23	30	18	27	1.98
153551--153592	17	2.4	18	84	4	59	66	9	16	7	1.42
160119--160168	26	1.9	26	95	0	91	22	24	20	34	1.97
160189--160231	19	2.4	19	84	7	54	23	27	20	27	1.99
160431--160472	17	2.4	18	84	4	59	66	9	16	7	1.42
164253--164289	15	2.5	15	86	0	56	62	8	5	24	1.44

Tables:   1

The End!