genome.fa.s5505.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01005505.1 Hibiscus syriacus cultivar Beakdansim tig00012689_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  120325

Tables:   1   

This is table  1  of  1  ( 67 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5915--5940	8	3.2	8	100	0	52	38	0	11	50	1.39
9450--9476	8	3.4	8	100	0	54	88	0	0	11	0.50
10423--10716	54	5.4	54	85	7	303	31	19	24	24	1.98
10471--10789	54	5.9	53	88	4	345	31	21	24	23	1.98
21903--21947	18	2.5	18	100	0	90	42	28	8	20	1.82
28733--28850	6	18.8	6	72	17	71	77	4	4	14	1.08
28759--28836	33	2.3	33	82	10	88	76	5	3	14	1.09
28782--28852	19	3.7	18	77	18	72	80	2	4	12	0.97
28740--28850	16	6.6	17	66	17	56	77	3	4	14	1.06
28740--28862	39	3.1	38	73	23	101	77	3	4	14	1.07
28699--28869	88	2.0	86	81	10	204	74	4	4	16	1.14
30241--30589	36	9.8	37	78	15	301	46	5	2	45	1.41
30323--30589	36	7.2	38	87	7	388	44	4	3	46	1.42
30326--30589	74	3.6	74	90	4	408	45	4	3	46	1.41
30604--30631	2	14.0	2	100	0	56	50	0	0	50	1.00
31368--31952	85	6.9	84	87	2	778	26	17	20	34	1.95
34313--34353	21	2.0	21	85	9	57	75	0	4	19	0.98
36372--36731	85	4.2	85	83	0	434	28	18	18	34	1.95
36402--36739	169	2.0	170	84	1	446	28	16	18	35	1.93
36854--37004	57	2.6	59	85	5	191	26	11	21	41	1.86
36969--37255	156	1.8	156	85	1	405	29	12	19	38	1.88
42210--42321	30	3.7	30	75	7	84	59	8	12	18	1.58
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45497--45533	14	2.6	14	91	0	56	75	0	2	21	0.92
45511--45582	24	3.0	25	78	21	75	65	0	0	34	0.93
45511--45565	14	3.8	15	81	11	62	67	0	0	32	0.91
45609--45920	36	8.9	35	77	16	201	45	6	2	44	1.44
45669--45719	23	2.2	23	85	0	66	47	7	3	41	1.51
45666--45722	23	2.4	23	77	16	62	47	7	3	42	1.47
45636--45757	61	2.0	60	90	1	190	45	7	2	44	1.44
45696--45920	72	3.1	72	87	8	314	44	5	4	45	1.46
46712--46745	16	2.0	17	88	11	52	38	0	0	61	0.96
46716--46761	24	1.9	24	86	0	65	32	0	0	67	0.91
49023--49105	33	2.5	34	84	5	107	20	2	12	65	1.37
49018--49109	34	2.8	33	80	8	114	19	4	11	64	1.43
63040--63078	17	2.3	17	86	0	51	69	0	0	30	0.89
63452--63498	24	1.9	25	83	12	62	61	8	0	29	1.25
68583--68949	53	7.0	53	85	3	426	23	27	19	29	1.98
69416--69588	93	1.9	93	89	7	271	29	17	15	36	1.91
69548--69618	22	3.3	22	66	15	58	38	18	14	29	1.90
69547--69638	42	2.2	42	90	0	139	34	19	17	28	1.94
73102--73158	28	2.0	28	100	0	114	26	24	14	35	1.93
79809--79900	46	2.0	48	80	8	109	13	9	3	73	1.19
79809--79900	47	1.9	48	82	6	116	13	9	3	73	1.19
92067--92128	27	2.3	27	82	15	76	77	1	14	6	1.04
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
93264--93534	48	5.8	48	81	6	358	28	22	18	30	1.97
93262--93536	89	3.0	89	87	6	424	27	22	18	30	1.98
93262--93530	96	2.9	90	91	3	414	28	22	18	30	1.97
93449--93652	113	1.8	112	89	5	313	28	23	18	29	1.97
93562--93674	48	2.3	48	83	10	133	29	23	15	31	1.95
93401--93695	161	1.8	160	84	7	400	28	22	17	30	1.97
95998--96063	3	22.0	3	96	0	123	33	1	0	65	1.02
97475--97531	27	2.1	27	100	0	114	15	24	12	47	1.80
99897--100088	60	3.2	60	71	14	207	33	27	21	17	1.95
99837--100091	118	2.2	118	96	0	474	32	28	22	16	1.96
101889--101971	31	2.5	33	73	9	80	30	12	2	55	1.49
104171--104232	29	2.1	30	85	5	83	41	0	3	54	1.16
104443--104483	22	1.9	21	90	5	64	24	0	4	70	1.06
105489--105567	22	3.6	22	94	0	131	36	13	15	34	1.87
105863--105935	23	3.3	21	75	24	78	52	0	10	36	1.37
105863--105956	9	10.8	9	70	26	53	53	0	10	36	1.36
105872--105962	23	3.8	24	75	19	82	52	0	9	37	1.35
105865--105933	7	9.6	7	79	14	54	52	0	11	36	1.38
107806--107842	19	1.9	19	88	0	56	40	8	16	35	1.78
110453--110497	20	2.2	20	88	0	63	15	11	17	55	1.68
110417--110497	40	2.0	40	82	0	99	16	9	17	56	1.65
110583--110639	23	2.5	23	82	2	71	29	12	21	36	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
116941--116993	23	2.3	23	84	12	65	26	28	15	30	1.96

Tables:   1

The End!