genome.fa.s5507.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01005507.1 Hibiscus syriacus cultivar Beakdansim tig00012699_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  115563

Tables:   1   

This is table  1  of  1  ( 46 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9422--9483	23	2.7	22	82	9	70	46	20	3	29	1.66
9441--9490	23	2.1	23	88	7	73	48	16	2	34	1.57
10617--10731	46	2.5	46	84	4	144	18	15	22	43	1.87
11086--11139	3	17.7	3	96	3	99	66	0	1	31	1.02
11232--11347	16	7.3	16	72	9	85	8	12	27	51	1.68
11279--11341	32	1.9	33	90	3	101	9	14	26	49	1.74
16086--16186	44	2.3	44	94	0	175	40	4	7	46	1.55
16132--16571	123	3.7	122	89	6	650	41	11	10	36	1.76
16165--16571	122	3.4	114	86	9	482	41	12	10	36	1.77
16593--16617	13	1.9	13	100	0	50	32	24	16	28	1.96
16629--16688	32	1.9	32	82	3	77	41	16	8	33	1.78
16987--17181	50	3.8	51	87	3	259	24	13	14	47	1.80
16987--17181	101	1.9	102	84	4	259	24	13	14	47	1.80
22871--22939	21	3.3	21	97	0	129	26	18	13	42	1.87
23802--23871	23	3.1	23	80	15	83	52	15	5	25	1.65
25786--25922	60	2.3	60	76	2	141	27	30	20	21	1.98
26053--26133	25	3.3	25	69	10	76	35	4	9	49	1.58
26028--26183	49	3.2	49	85	5	201	37	5	9	47	1.60
26466--26539	25	3.0	24	71	11	69	40	5	9	44	1.60
30141--30166	7	3.7	7	100	0	52	26	0	15	57	1.38
34415--34873	184	2.4	185	83	4	546	39	21	11	27	1.88
37488--37543	18	3.1	17	73	17	51	57	0	0	42	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43878--43905	2	14.0	2	100	0	56	50	0	0	50	1.00
45354--45399	16	2.8	16	86	3	65	19	15	23	41	1.89
46973--47042	23	3.1	23	80	15	83	52	15	5	25	1.65
47810--47844	4	8.8	4	100	0	70	25	0	0	74	0.82
54938--54974	19	2.0	20	89	10	60	43	0	8	48	1.32
57396--57431	2	18.5	2	94	5	65	50	0	0	50	1.00
67477--67524	18	2.7	18	80	9	62	41	0	4	54	1.20
68528--68571	17	2.6	17	77	0	52	59	0	0	40	0.98
68607--68649	16	2.6	17	77	3	52	58	0	0	41	0.98
79247--79287	20	2.0	20	100	0	82	34	12	14	39	1.84
80828--81672	453	1.9	450	84	2	1140	28	22	24	25	1.99
85441--85477	2	18.5	2	100	0	74	48	0	0	51	1.00
88754--88829	31	2.4	31	80	2	89	26	31	27	14	1.95
90315--90349	18	1.9	18	88	0	52	28	17	0	54	1.43
91624--91660	7	5.1	7	93	6	65	27	27	32	13	1.94
91624--91660	15	2.6	14	95	4	65	27	27	32	13	1.94
91652--91712	13	4.3	13	77	18	59	19	19	44	16	1.87
91661--91721	18	3.7	18	77	20	60	21	18	44	16	1.87
91656--91730	31	2.4	31	88	0	114	20	17	45	17	1.86
91689--91734	18	2.6	18	96	0	83	13	15	52	19	1.75
91679--91711	13	2.5	13	100	0	66	18	15	48	18	1.81
91739--91784	9	4.9	9	79	10	56	34	32	19	13	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
102905--102979	38	2.0	38	97	0	141	24	17	22	36	1.95
113216--113268	2	27.0	2	88	3	81	49	3	0	47	1.19

Tables:   1

The End!