Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01005509.1 Hibiscus syriacus cultivar Beakdansim tig00012720_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  93424

Tables:   1   

This is table  1  of  1  ( 43 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3026--3129
44
2.4
44
85
0
136
33
18
16
31
1.93
3050--3125
23
3.4
23
69
7
66
32
18
17
31
1.94
3612--3650
13
2.9
13
88
3
51
38
10
7
43
1.67
7488--7851
46
8.0
46
87
3
524
43
12
21
21
1.86
7594--8008
20
18.6
20
73
19
263
43
12
22
21
1.86
7490--7563
20
3.1
25
70
21
70
50
12
16
21
1.77
7502--7911
66
6.1
66
76
16
385
43
12
22
21
1.85
7838--8014
46
3.8
46
90
0
291
44
11
22
22
1.84
7502--8013
66
7.6
63
73
18
272
43
12
21
22
1.85
9883--9931
3
16.3
3
76
23
50
69
0
0
30
0.89
9878--9932
11
5.1
12
82
14
59
69
0
0
30
0.89
9892--9932
16
2.7
15
89
10
66
68
0
0
31
0.90
10169--10198
15
2.0
15
93
0
51
50
6
10
33
1.62
20285--20326
20
2.0
20
86
4
57
42
4
7
45
1.52
22554--22583
2
15.5
2
93
6
53
50
0
0
50
1.00
39534--39585
20
2.6
20
93
0
86
30
15
15
38
1.88
42633--43013
37
10.7
35
63
18
110
34
18
8
38
1.82
42961--43085
37
3.5
37
68
10
105
33
16
9
40
1.81
42842--43262
212
2.0
211
84
7
552
32
18
9
40
1.82
42643--43251
141
4.3
141
78
11
498
32
18
9
39
1.83
43082--43253
34
4.9
34
68
12
107
29
19
9
41
1.83
42598--43253
71
9.2
70
76
11
543
32
19
9
39
1.83
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
44048--44089
22
2.0
21
85
4
57
42
0
4
52
1.22
44134--44212
24
3.2
25
82
8
90
50
0
1
48
1.08
46695--46721
12
2.2
12
100
0
54
40
7
7
44
1.60
48744--48835
42
2.2
42
92
0
148
18
14
18
48
1.80
49048--49105
20
2.8
21
82
12
59
46
1
0
51
1.11
49234--49277
22
2.0
22
81
4
52
52
2
2
43
1.26
49611--49660
20
2.5
20
96
0
91
36
16
8
40
1.77
49644--49717
30
2.5
30
86
2
114
33
18
4
43
1.69
49644--49716
15
4.9
15
72
3
76
32
19
4
43
1.70
53702--53784
26
3.2
26
68
10
69
49
6
2
42
1.40
54638--54674
18
2.1
18
90
10
58
54
2
0
43
1.14
58635--58707
24
3.0
24
78
7
85
21
6
17
53
1.67
58867--58901
2
17.5
2
100
0
70
48
0
0
51
1.00
63671--63781
48
2.3
48
81
6
127
19
17
18
45
1.86
63709--63781
24
3.0
24
75
0
74
19
13
20
46
1.83
68784--68856
24
3.0
24
71
0
65
23
9
19
47
1.78
69016--69054
2
19.5
2
100
0
78
48
0
0
51
1.00
80958--81140
60
3.0
60
75
15
173
31
23
4
39
1.76
81863--81909
15
3.3
15
76
11
53
25
0
2
72
0.96
86674--86722
20
2.5
20
96
3
91
55
0
28
16
1.42
87347--87510
87
1.9
85
85
5
222
31
25
14
29
1.95

Tables:   1

The End!