genome.fa.s551.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000551.1 Hibiscus syriacus cultivar Beakdansim tig00001075_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  270927

Tables:   1   2   

This is table  1  of  2  ( 122 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16780--16843	24	2.8	24	72	27	50	40	0	0	59	0.97
22422--22454	15	2.2	15	100	0	66	48	0	0	51	1.00
23181--23280	46	2.2	46	79	0	110	42	15	15	28	1.86
23215--23244	12	2.5	12	100	0	60	36	26	16	20	1.93
23257--23329	23	3.2	23	88	1	94	45	19	10	24	1.82
23326--23439	31	3.4	33	78	13	99	61	14	4	19	1.50
30695--30766	15	4.7	15	75	13	65	40	0	1	58	1.07
32486--32533	21	2.3	21	85	0	60	25	39	12	22	1.89
32537--32629	21	4.5	21	89	8	120	18	34	26	20	1.96
32543--32620	41	1.9	41	86	5	113	19	34	24	21	1.96
33149--33245	33	2.9	34	85	3	133	55	4	3	37	1.35
33147--33252	34	3.2	33	82	8	133	54	4	2	37	1.36
33631--34107	126	3.8	126	96	1	895	32	20	25	21	1.97
33631--34107	250	1.9	252	97	0	913	32	20	25	21	1.97
34172--34212	8	5.2	8	82	5	57	36	29	0	34	1.58
37193--37230	13	3.0	13	88	3	60	44	0	0	55	0.99
37243--37300	23	2.6	23	94	5	102	44	12	3	39	1.58
37436--37471	16	2.2	16	95	0	63	8	50	41	0	1.33
38185--38267	42	2.0	42	92	0	139	8	39	20	31	1.82
46130--46177	23	2.2	21	81	7	51	50	18	6	25	1.70
51332--51384	3	18.3	3	85	14	76	32	0	0	67	0.91
51438--51500	33	1.9	33	93	0	108	39	17	11	31	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52890--53405	110	4.7	110	91	1	817	33	23	19	24	1.97
53610--53897	84	3.5	83	80	6	287	30	25	20	24	1.98
54244--54311	5	13.2	5	85	11	68	32	0	0	67	0.91
54243--54320	3	28.7	3	74	25	68	30	0	0	69	0.89
54243--54320	13	5.7	15	74	25	68	30	0	0	69	0.89
54246--54322	5	14.4	5	85	12	57	29	0	0	70	0.88
54379--54451	30	2.3	32	83	6	87	38	17	13	30	1.89
58494--59037	110	5.0	110	88	2	740	33	22	18	25	1.97
59142--59669	84	6.3	84	86	3	672	31	25	19	24	1.98
59142--59669	169	3.2	168	88	2	719	31	25	19	24	1.98
60010--60066	5	11.2	5	79	20	57	24	0	0	75	0.80
60014--60069	8	7.0	8	79	16	55	25	0	0	75	0.81
60529--60629	44	2.3	43	80	16	109	27	3	0	67	1.15
66048--66081	3	11.7	3	93	6	61	35	0	0	64	0.94
74244--74280	15	2.5	15	95	0	65	35	13	21	29	1.92
81230--81295	33	2.0	34	82	8	82	31	13	10	43	1.78
88894--88992	49	2.0	49	100	0	198	47	6	24	22	1.73
90174--90204	6	5.0	6	96	4	53	35	0	0	64	0.94
100045--100091	15	3.2	15	81	6	51	57	0	2	40	1.11
100048--100122	23	3.3	23	74	10	64	56	0	1	42	1.08
100077--100125	17	2.9	18	82	8	59	53	0	0	46	1.00
112483--112508	6	4.3	6	100	0	52	19	19	15	46	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
112964--113051	44	2.0	45	88	6	135	43	3	7	45	1.50
113295--113382	46	1.9	46	88	4	133	36	15	7	39	1.77
113851--113905	3	18.3	3	100	0	110	32	0	0	67	0.91
124835--124875	17	2.3	19	79	12	50	51	2	4	41	1.36
126619--126680	4	15.5	4	86	0	70	40	0	9	50	1.35
126638--126695	4	14.5	4	85	0	80	32	0	17	50	1.46
126619--126692	8	9.2	8	93	0	112	37	0	12	50	1.40
128121--128155	14	2.5	14	90	0	52	45	11	34	8	1.71
130921--130966	9	5.0	9	80	19	51	65	0	0	34	0.93
130921--130981	19	3.2	20	84	13	76	62	0	1	36	1.05
131032--131115	41	2.0	41	82	8	100	41	0	1	57	1.06
131054--131179	37	3.0	47	79	19	124	40	1	0	57	1.14
131032--131111	35	2.3	35	85	12	112	42	0	1	56	1.07
131091--131185	37	2.6	37	91	3	140	41	2	1	55	1.18
131110--131174	19	3.5	19	83	12	98	40	3	0	56	1.15
131055--131180	12	10.3	12	65	17	55	39	1	0	57	1.14
131110--131185	37	2.1	37	100	0	152	40	2	0	56	1.13
137682--137753	36	2.0	36	94	5	128	33	25	19	22	1.97
139825--140150	106	3.0	108	93	4	550	44	10	7	37	1.68
140267--140308	20	2.1	20	90	0	66	47	0	28	23	1.52
140433--140558	50	2.5	50	81	2	164	20	26	34	17	1.95
140570--140632	29	2.1	29	85	2	81	28	14	28	28	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
141295--141351	28	2.0	28	89	0	87	33	17	15	33	1.92
143326--143355	2	15.0	2	100	0	60	0	0	50	50	1.00
143344--144099	253	3.0	253	99	0	1491	29	13	20	35	1.91
143344--144100	250	3.0	252	98	1	1491	29	13	21	35	1.91
144643--144788	59	2.5	59	79	5	143	33	15	14	36	1.87
147431--147491	7	8.7	7	100	0	122	0	27	29	42	1.56
147768--147829	28	2.3	26	76	17	65	45	1	3	50	1.27
148261--148312	24	2.2	24	82	6	61	46	3	0	50	1.20
151975--152053	29	2.6	30	84	7	99	46	2	6	44	1.42
156091--156134	21	2.1	21	82	0	52	61	13	4	20	1.50
163817--163874	26	2.2	26	90	0	89	15	27	3	53	1.58
163832--163883	26	2.0	26	85	3	70	17	32	3	46	1.66
173526--173567	19	2.3	19	83	4	50	23	28	33	14	1.94
176404--176467	29	2.2	29	91	0	101	34	7	12	45	1.71
177684--177732	2	25.0	2	95	4	91	51	0	0	48	1.00
188039--188074	15	2.5	15	90	4	56	25	11	27	36	1.90
191277--191332	25	2.3	24	76	11	60	41	1	0	57	1.09
196431--196503	33	2.2	33	90	0	110	26	27	23	23	2.00
198294--199121	418	2.0	417	95	2	1462	34	16	16	33	1.91
199287--199482	23	8.5	22	76	11	130	47	1	26	24	1.60
199287--199459	46	3.8	45	76	8	161	47	1	26	24	1.59
199291--199479	69	2.7	68	81	5	184	48	1	25	24	1.60
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
199287--199482	92	2.1	92	85	5	254	47	1	26	24	1.60
200326--200365	21	1.9	21	89	0	62	40	5	5	50	1.46
203232--203283	2	26.0	2	100	0	104	50	0	0	50	1.00
203297--203369	24	3.0	23	76	15	67	27	6	0	65	1.17
203351--203410	23	2.6	22	82	12	68	30	1	1	66	1.11
203297--203408	15	7.4	15	69	20	74	27	4	0	66	1.16
203426--203466	11	3.6	11	87	6	55	24	4	4	65	1.32
203590--203652	32	1.9	34	84	12	87	26	4	1	66	1.20
203848--203872	2	12.5	2	100	0	50	48	0	0	52	1.00
204018--204068	25	2.2	23	82	10	59	17	3	0	78	0.90
208701--208777	17	4.7	16	75	13	52	79	9	10	1	1.00
208720--208777	23	2.5	22	81	13	64	81	8	8	1	0.96
209551--209627	22	3.5	22	94	0	136	37	27	14	20	1.91
210443--212136	106	16.0	106	90	1	2569	34	24	18	23	1.96
212867--212971	37	2.8	36	80	5	120	38	14	16	31	1.88
214083--214119	2	18.5	2	100	0	74	48	0	0	51	1.00
214180--214251	34	2.3	31	83	11	85	30	4	2	62	1.28
218062--218099	9	4.1	9	96	3	67	34	13	31	21	1.91
221053--221179	60	2.1	60	81	9	145	37	13	11	37	1.81
221923--222001	41	1.9	41	94	0	140	25	13	7	53	1.66
222172--222313	70	2.0	71	97	1	268	26	20	9	44	1.81
235394--235429	18	2.0	18	88	0	54	33	11	5	50	1.61
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
235974--235998	13	1.9	13	100	0	50	64	0	0	36	0.94
236597--236665	15	4.8	14	67	13	50	62	7	1	28	1.31
238900--239014	58	2.0	58	84	6	153	35	15	15	33	1.90
241666--241709	18	2.2	20	84	11	56	47	0	2	50	1.13
243908--243948	20	2.0	20	100	0	82	34	4	24	36	1.77
244651--244685	18	1.9	18	88	0	52	54	0	17	28	1.43
256988--257140	66	2.4	64	81	7	177	37	5	10	45	1.63
257370--257447	33	2.4	33	80	0	84	25	2	23	48	1.63
263643--263697	27	2.0	27	100	0	110	43	0	12	43	1.42
264616--264663	21	2.2	23	82	14	57	29	6	10	54	1.59

Tables:   1   2