Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: VEPZ01000551.1 Hibiscus syriacus cultivar Beakdansim tig00001075_pilon, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 270927
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.33


File 2 of 2

Found at i:265191 original size:18 final size:18

Alignment explanation


    Indices: 265168--265202  Score: 52
    Period size: 18  Copynumber: 1.9  Consensus size: 18

     265158 ACTCTATTGA

                     *        
     265168 TCCAGTAGAGGACTCTCT
          1 TCCAGTAGAAGACTCTCT

                  *          
     265186 TCCAGTTGAAGACTCTC
          1 TCCAGTAGAAGACTCTC

     265203 ACCCATATAC


Statistics
Matches: 15,  Mismatches: 2, Indels: 0
        0.88            0.12        0.00

Matches are distributed among these distances:
  18   15  1.00

ACGTcount: A:0.23, C:0.29, G:0.20, T:0.29


Consensus pattern (18 bp):   
TCCAGTAGAAGACTCTCT

Found at i:269593 original size:21 final size:21

Alignment explanation


    Indices: 269564--269605  Score: 57
    Period size: 21  Copynumber: 2.0  Consensus size: 21

     269554 AAATGGATGT

                        *   *    
     269564 GGTGCCATCTGATACGGTTGC
          1 GGTGCCATCTGAAACGATTGC

                *                
     269585 GGTGTCATCTGAAACGATTGC
          1 GGTGCCATCTGAAACGATTGC

     269606 AGAATGTACA


Statistics
Matches: 18,  Mismatches: 3, Indels: 0
        0.86            0.14        0.00

Matches are distributed among these distances:
  21   18  1.00

ACGTcount: A:0.19, C:0.21, G:0.31, T:0.29


Consensus pattern (21 bp):   
GGTGCCATCTGAAACGATTGC

Done.