Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01005511.1 Hibiscus syriacus cultivar Beakdansim tig00012723_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 39647
ACGTcount: A:0.33, C:0.16, G:0.18, T:0.33
Found at i:3526 original size:24 final size:24
Alignment explanation
Indices: 3498--3553 Score: 94
Period size: 24 Copynumber: 2.3 Consensus size: 24
3488 CTCTTGGTGA
*
3498 TGGTTCTGTGTGGTTTCTCTCGTC
1 TGGTTCTGTATGGTTTCTCTCGTC
3522 TGGTTCTGTATGGTTTCTCTCGTC
1 TGGTTCTGTATGGTTTCTCTCGTC
*
3546 CGGTTCTG
1 TGGTTCTG
3554 GTGATCTCCT
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
24 30 1.00
ACGTcount: A:0.02, C:0.21, G:0.29, T:0.48
Consensus pattern (24 bp):
TGGTTCTGTATGGTTTCTCTCGTC
Found at i:3929 original size:22 final size:21
Alignment explanation
Indices: 3887--3931 Score: 54
Period size: 21 Copynumber: 2.1 Consensus size: 21
3877 GACAAACACC
* * *
3887 AAAAAAAACGATTAAATAAAT
1 AAAAAAAAAGATAAAAAAAAT
3908 AAAAAAAAAGATAAAACAAAAT
1 AAAAAAAAAGATAAAA-AAAAT
3930 AA
1 AA
3932 TATGATATGA
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
21 14 0.70
22 6 0.30
ACGTcount: A:0.78, C:0.04, G:0.04, T:0.13
Consensus pattern (21 bp):
AAAAAAAAAGATAAAAAAAAT
Found at i:4102 original size:2 final size:2
Alignment explanation
Indices: 4095--4143 Score: 71
Period size: 2 Copynumber: 24.0 Consensus size: 2
4085 TTTTGCGAAC
*
4095 TA TA TA TA TA TA GTA TA GA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA -TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
*
4138 TG TA TA
1 TA TA TA
4144 AAGTAAAATA
Statistics
Matches: 42, Mismatches: 4, Indels: 2
0.88 0.08 0.04
Matches are distributed among these distances:
2 40 0.95
3 2 0.05
ACGTcount: A:0.47, C:0.00, G:0.06, T:0.47
Consensus pattern (2 bp):
TA
Found at i:10128 original size:13 final size:13
Alignment explanation
Indices: 10110--10142 Score: 57
Period size: 13 Copynumber: 2.5 Consensus size: 13
10100 ATGATAATTT
10110 TAAAATTTTTATA
1 TAAAATTTTTATA
10123 TAAAATTTTTATA
1 TAAAATTTTTATA
*
10136 CAAAATT
1 TAAAATT
10143 ATATATTTTT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
13 19 1.00
ACGTcount: A:0.48, C:0.03, G:0.00, T:0.48
Consensus pattern (13 bp):
TAAAATTTTTATA
Found at i:15094 original size:163 final size:161
Alignment explanation
Indices: 14898--15349 Score: 465
Period size: 180 Copynumber: 2.7 Consensus size: 161
14888 ATCCAAATTA
* * ***
14898 AAAATGTGTCGATCCAAAACGATATAACAGGTAAAACTATGACAAAACCGGTATTGAAATGATAA
1 AAAATGTATCGATCCAAAACGATATAACAGGTAAAAATATGACAAAACCGGTAACAAAATGATAA
* * *
14963 AACCGGTAAAGAAC-TACCGGATACATTTAAAGTGTCGGTATTTTAATATAAAGATCGACACTTC
66 AACCGGT-AA-AACGTACCGGATACATTGAAAGTGTCGATACTTT-ATATAAAGATCGACACTTC
15027 GTGAATTTAAAAGAGAAACAGTTTAAAATCCTAT
128 GTGAATTTAAAAGAGAAACAGTTTAAAATCCTAT
* *
15061 AAAATGTATCGATCCAAAACGATATACCAGGTAAAAATATGATAAAACCGGTAACAAAATGATAA
1 AAAATGTATCGATCCAAAACGATATAACAGGTAAAAATATGACAAAACCGGTAACAAAATGATAA
* * * * *
15126 AACTGGTAAAACGTTATCGGATATATTGAAAGTGTCGATACTTTATATAAGGATCGACACTTTGT
66 AACCGGTAAAACG-TACCGGATACATTGAAAGTGTCGATACTTTATATAAAGATCGACACTTCGT
* *
15191 GAATTTAAAAGAGAAGCAGTTTTAGCGCCTATAATGTGTCGATACTTT
130 GAATTTAAAAGAGAAACAG-TTTA------A-AA----TC----CTAT
* * * * *
15239 AAAAAATATATCGATCCACAACGATATAACAGGTAAAAATATGATAAAATCGGTATCAAAATGAT
1 AAAA--TGTATCGATCCAAAACGATATAACAGGTAAAAATATGACAAAACCGGTAACAAAATGAT
* * *
15304 AAAACCGGTAAAATGATACCAGATATATTGAAAGTGTCGATACTTT
64 AAAACCGGTAAAACG-TACCGGATACATTGAAAGTGTCGATACTTT
15350 CGTAAGTACG
Statistics
Matches: 242, Mismatches: 27, Indels: 23
0.83 0.09 0.08
Matches are distributed among these distances:
161 3 0.01
162 39 0.16
163 93 0.38
169 1 0.00
170 2 0.01
174 2 0.01
178 7 0.03
180 95 0.39
ACGTcount: A:0.43, C:0.13, G:0.17, T:0.27
Consensus pattern (161 bp):
AAAATGTATCGATCCAAAACGATATAACAGGTAAAAATATGACAAAACCGGTAACAAAATGATAA
AACCGGTAAAACGTACCGGATACATTGAAAGTGTCGATACTTTATATAAAGATCGACACTTCGTG
AATTTAAAAGAGAAACAGTTTAAAATCCTAT
Found at i:15113 original size:20 final size:19
Alignment explanation
Indices: 15090--15136 Score: 67
Period size: 20 Copynumber: 2.4 Consensus size: 19
15080 CGATATACCA
15090 GGTAAAAATATGATAAAACC
1 GGTAAAAA-ATGATAAAACC
*
15110 GGTAACAAAATGATAAAACT
1 GGTAA-AAAATGATAAAACC
15130 GGTAAAA
1 GGTAAAA
15137 CGTTATCGGA
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
19 2 0.08
20 20 0.80
21 3 0.12
ACGTcount: A:0.55, C:0.09, G:0.17, T:0.19
Consensus pattern (19 bp):
GGTAAAAAATGATAAAACC
Found at i:15293 original size:20 final size:19
Alignment explanation
Indices: 15270--15316 Score: 58
Period size: 20 Copynumber: 2.4 Consensus size: 19
15260 CGATATAACA
*
15270 GGTAAAAATATGATAAAATC
1 GGTAAAAA-ATGATAAAACC
*
15290 GGTATCAAAATGATAAAACC
1 GGTA-AAAAATGATAAAACC
15310 GGTAAAA
1 GGTAAAA
15317 TGATACCAGA
Statistics
Matches: 23, Mismatches: 3, Indels: 3
0.79 0.10 0.10
Matches are distributed among these distances:
19 2 0.09
20 18 0.78
21 3 0.13
ACGTcount: A:0.53, C:0.09, G:0.17, T:0.21
Consensus pattern (19 bp):
GGTAAAAAATGATAAAACC
Found at i:17575 original size:23 final size:21
Alignment explanation
Indices: 17528--17594 Score: 89
Period size: 21 Copynumber: 3.1 Consensus size: 21
17518 AAGACAATCA
*
17528 AGAGTCGAAGAGAAACTTGAT
1 AGAGTCGAAGAGAAACTTGAG
17549 AGAGTCGAAGAGAAACTTTTGAG
1 AGAGTCGAAGAGAAAC--TTGAG
* *
17572 AGAGTCGAAGATACACTTGAG
1 AGAGTCGAAGAGAAACTTGAG
17593 AG
1 AG
17595 GCATAAGGGG
Statistics
Matches: 41, Mismatches: 3, Indels: 4
0.85 0.06 0.08
Matches are distributed among these distances:
21 23 0.56
23 18 0.44
ACGTcount: A:0.40, C:0.10, G:0.30, T:0.19
Consensus pattern (21 bp):
AGAGTCGAAGAGAAACTTGAG
Found at i:19513 original size:19 final size:19
Alignment explanation
Indices: 19489--19537 Score: 89
Period size: 19 Copynumber: 2.6 Consensus size: 19
19479 AATGTAGGGT
19489 TAATTTTGTATAAGATTTA
1 TAATTTTGTATAAGATTTA
*
19508 TAATTTTGTATACGATTTA
1 TAATTTTGTATAAGATTTA
19527 TAATTTTGTAT
1 TAATTTTGTAT
19538 GTGAATATAA
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
19 29 1.00
ACGTcount: A:0.33, C:0.02, G:0.10, T:0.55
Consensus pattern (19 bp):
TAATTTTGTATAAGATTTA
Found at i:20332 original size:201 final size:200
Alignment explanation
Indices: 19650--20433 Score: 1329
Period size: 200 Copynumber: 3.9 Consensus size: 200
19640 AATTTACAAT
*
19650 ATGGCAAACAGGGTGCAACCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAAACAT
1 ATGGCAAACAGGGTGCAACCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCATAAACAT
*
19715 CGAAAACCAAAAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAAGTATACCGGTTTT
66 CGAAACCCAAAAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAAGTATACCGGTTTT
*
19780 ATGAGAGAATAGGTCTAAATAATGTGTCGACACTTTTTTAGTTTGTGTCGATATTTTTGGTCCAG
131 ATGAGAGAATAGGTCTAAATAATGTGTCGACACTTTTTTAGTTTGTGTCGATATTTTTGGTCCAT
19845 AATGA
196 AATGA
* * *
19850 ATGGCAAACAGGGTGCAACCGTAAAGTGTCGATTCATATATAAAAAGTATCGATCCCATAAACAT
1 ATGGCAAACAGGGTGCAACCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCATAAACAT
* *
19915 CGAAACCCAAAAGTATAATGTAATATGTAATTTTTCAAACTAACCGGTACAAATATACCGGTTTT
66 CGAAACCCAAAAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAAGTATACCGGTTTT
*
19980 ATGAGAGAATAGGTCTAAATAATGTGTCGACACTTTTGTAGTTTGTGTCGATATTTTTGGTCCAT
131 ATGAGAGAATAGGTCTAAATAATGTGTCGACACTTTTTTAGTTTGTGTCGATATTTTTGGTCCAT
20045 AATGA
196 AATGA
* *
20050 ATGGCAAACAGGGTGCAACCGTAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCGTAAACAT
1 ATGGCAAACAGGGTGCAACCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCATAAACAT
20115 CGAAACCCAAAAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAAGTATACCGGTTTT
66 CGAAACCCAAAAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAAGTATACCGGTTTT
*
20180 ATGAGATAATAGGTCTAAATAATGTGTCGACACTTTTTTTAGTTTGTGTCGATATTTTTGGTCCA
131 ATGAGAGAATAGGTCTAAATAATGTGTCGACAC-TTTTTTAGTTTGTGTCGATATTTTTGGTCCA
20245 TAATGA
195 TAATGA
* * *
20251 ATGGCAAACAGGGTGCGACAATAAAGTGTCAATCCATATATAAAAAGTGTCGATCCCATAAACAT
1 ATGGCAAACAGGGTGCAACCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCATAAACAT
* *
20316 CGAAACCCATAAGTATAATGTAATAGGTAATTTTTCAATCTAACCGGTACAAGTATACCGGTTTT
66 CGAAACCCAAAAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAAGTATACCGGTTTT
* * * * *
20381 ATGAGAGAATTGGTATATAAT-ATGTATCGACACTGTTTAATGTTT-TGTCGATA
131 ATGAGAGAATAGGTCTA-AATAATGTGTCGACACTTTTTTA-GTTTGTGTCGATA
20434 CTAATTTAAA
Statistics
Matches: 552, Mismatches: 29, Indels: 6
0.94 0.05 0.01
Matches are distributed among these distances:
200 361 0.65
201 188 0.34
202 3 0.01
ACGTcount: A:0.36, C:0.15, G:0.18, T:0.31
Consensus pattern (200 bp):
ATGGCAAACAGGGTGCAACCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCATAAACAT
CGAAACCCAAAAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAAGTATACCGGTTTT
ATGAGAGAATAGGTCTAAATAATGTGTCGACACTTTTTTAGTTTGTGTCGATATTTTTGGTCCAT
AATGA
Found at i:20413 original size:401 final size:400
Alignment explanation
Indices: 19650--20414 Score: 1334
Period size: 401 Copynumber: 1.9 Consensus size: 400
19640 AATTTACAAT
19650 ATGGCAAACAGGGTGCAACCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAAACAT
1 ATGGCAAACAGGGTGCAACCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAAACAT
19715 CGAAAACCAAAAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAAGTATACCGGTTTT
66 CGAAAACCAAAAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAAGTATACCGGTTTT
19780 ATGAGAGAATAGGTCTAAATAATGTGTCGACACTTTTTTAGTTTGTGTCGATATTTTTGGTCCAG
131 ATGAGAGAATAGGTCTAAATAATGTGTCGACACTTTTTTAGTTTGTGTCGATATTTTTGGTCCAG
** * *
19845 AATGAATGGCAAACAGGGTGCAACCGTAAAGTGTCGATTCATATATAAAAAGTATCGATCCCATA
196 AATGAATGGCAAACAGGGTGCAACAATAAAGTGTCAATCCATATATAAAAAGTATCGATCCCATA
*
19910 AACATCGAAACCCAAAAGTATAATGTAATATGTAATTTTTCAAACTAACCGGTACAAATATACCG
261 AACATCGAAACCCAAAAGTATAATGTAATAGGTAATTTTTCAAACTAACCGGTACAAATATACCG
* *
19975 GTTTTATGAGAGAATAGGTCTAAATAATGTGTCGACACTTTTGTAGTTTGTGTCGATATTTTTGG
326 GTTTTATGAGAGAATAGGTATAAATAATGTATCGACACTTTTGTAGTTTGTGTCGATATTTTTGG
20040 TCCATAATGA
391 TCCATAATGA
* **
20050 ATGGCAAACAGGGTGCAACCGTAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCGTAAACAT
1 ATGGCAAACAGGGTGCAACCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAAACAT
*
20115 CGAAACCCAAAAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAAGTATACCGGTTTT
66 CGAAAACCAAAAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAAGTATACCGGTTTT
*
20180 ATGAGATAATAGGTCTAAATAATGTGTCGACACTTTTTTTAGTTTGTGTCGATATTTTTGGTCCA
131 ATGAGAGAATAGGTCTAAATAATGTGTCGACAC-TTTTTTAGTTTGTGTCGATATTTTTGGTCCA
* * *
20245 TAATGAATGGCAAACAGGGTGCGACAATAAAGTGTCAATCCATATATAAAAAGTGTCGATCCCAT
195 GAATGAATGGCAAACAGGGTGCAACAATAAAGTGTCAATCCATATATAAAAAGTATCGATCCCAT
* * *
20310 AAACATCGAAACCCATAAGTATAATGTAATAGGTAATTTTTCAATCTAACCGGTACAAGTATACC
260 AAACATCGAAACCCAAAAGTATAATGTAATAGGTAATTTTTCAAACTAACCGGTACAAATATACC
*
20375 GGTTTTATGAGAGAATTGGTATATAAT-ATGTATCGACACT
325 GGTTTTATGAGAGAATAGGTATA-AATAATGTATCGACACT
20415 GTTTAATGTT
Statistics
Matches: 344, Mismatches: 19, Indels: 3
0.94 0.05 0.01
Matches are distributed among these distances:
400 158 0.46
401 183 0.53
402 3 0.01
ACGTcount: A:0.36, C:0.15, G:0.18, T:0.31
Consensus pattern (400 bp):
ATGGCAAACAGGGTGCAACCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAAACAT
CGAAAACCAAAAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAAGTATACCGGTTTT
ATGAGAGAATAGGTCTAAATAATGTGTCGACACTTTTTTAGTTTGTGTCGATATTTTTGGTCCAG
AATGAATGGCAAACAGGGTGCAACAATAAAGTGTCAATCCATATATAAAAAGTATCGATCCCATA
AACATCGAAACCCAAAAGTATAATGTAATAGGTAATTTTTCAAACTAACCGGTACAAATATACCG
GTTTTATGAGAGAATAGGTATAAATAATGTATCGACACTTTTGTAGTTTGTGTCGATATTTTTGG
TCCATAATGA
Found at i:21932 original size:12 final size:12
Alignment explanation
Indices: 21910--22009 Score: 103
Period size: 12 Copynumber: 8.3 Consensus size: 12
21900 CACGCGGTCA
*
21910 ATGAAGATGAA-
1 ATGACGATGAAG
21921 ACTGACGATGAAG
1 A-TGACGATGAAG
21934 ATGACGATGAAG
1 ATGACGATGAAG
21946 ATGACGATGAAG
1 ATGACGATGAAG
*
21958 CTGACGATGAAG
1 ATGACGATGAAG
* *
21970 ATAACTATGAAG
1 ATGACGATGAAG
* * *
21982 ATGATGACGATG
1 ATGACGATGAAG
* *
21994 ATGATGATGATG
1 ATGACGATGAAG
22006 ATGA
1 ATGA
22010 TGATCCAAAC
Statistics
Matches: 76, Mismatches: 11, Indels: 3
0.84 0.12 0.03
Matches are distributed among these distances:
11 1 0.01
12 74 0.97
13 1 0.01
ACGTcount: A:0.41, C:0.08, G:0.30, T:0.21
Consensus pattern (12 bp):
ATGACGATGAAG
Found at i:21936 original size:6 final size:6
Alignment explanation
Indices: 21910--22009 Score: 69
Period size: 6 Copynumber: 16.7 Consensus size: 6
21900 CACGCGGTCA
* * *
21910 ATGAAG ATGAA- ACTGACG ATGAAG ATGACG ATGAAG ATGACG ATGAAG
1 ATGAAG ATGAAG A-TGAAG ATGAAG ATGAAG ATGAAG ATGAAG ATGAAG
* * * * * * * *
21958 CTGACG ATGAAG AT-AACT ATGAAG ATGATG ACGATG ATGATG ATGATG
1 ATGAAG ATGAAG ATGAA-G ATGAAG ATGAAG ATGAAG ATGAAG ATGAAG
22006 ATGA
1 ATGA
22010 TGATCCAAAC
Statistics
Matches: 75, Mismatches: 15, Indels: 8
0.77 0.15 0.08
Matches are distributed among these distances:
5 3 0.04
6 69 0.92
7 3 0.04
ACGTcount: A:0.41, C:0.08, G:0.30, T:0.21
Consensus pattern (6 bp):
ATGAAG
Found at i:21962 original size:36 final size:36
Alignment explanation
Indices: 21910--21985 Score: 116
Period size: 36 Copynumber: 2.1 Consensus size: 36
21900 CACGCGGTCA
*
21910 ATGAAGATGAAACTGACGATGAAGATGACGATGAAG
1 ATGAAGATGAAACTGACGATGAAGATAACGATGAAG
* * *
21946 ATGACGATGAAGCTGACGATGAAGATAACTATGAAG
1 ATGAAGATGAAACTGACGATGAAGATAACGATGAAG
21982 ATGA
1 ATGA
21986 TGACGATGAT
Statistics
Matches: 36, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
36 36 1.00
ACGTcount: A:0.43, C:0.09, G:0.29, T:0.18
Consensus pattern (36 bp):
ATGAAGATGAAACTGACGATGAAGATAACGATGAAG
Found at i:21993 original size:9 final size:9
Alignment explanation
Indices: 21976--22013 Score: 58
Period size: 9 Copynumber: 4.2 Consensus size: 9
21966 GAAGATAACT
*
21976 ATGAAGATG
1 ATGATGATG
*
21985 ATGACGATG
1 ATGATGATG
21994 ATGATGATG
1 ATGATGATG
22003 ATGATGATG
1 ATGATGATG
22012 AT
1 AT
22014 CCAAACAAGT
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
9 27 1.00
ACGTcount: A:0.37, C:0.03, G:0.32, T:0.29
Consensus pattern (9 bp):
ATGATGATG
Found at i:23531 original size:183 final size:183
Alignment explanation
Indices: 23223--23800 Score: 1030
Period size: 183 Copynumber: 3.2 Consensus size: 183
23213 CAAAGTTTTC
**
23223 ACACTTTTTAATATTGTGTATGTACTTTATGTCCAGAATGGAAGAAAAATGTGTCGATACCTTGT
1 ACACTTTTTAATATTGTGTCGGTACTTTATGTCCAGAATGGAAGAAAAATGTGTCGATACCTTGT
*
23288 CAAAAAGTGTCGACATTTACACATCGGAACCCAGAATTATACTGTAATAGATAATTTTGTAATAT
66 CAAAAAGTGTCGACATTTACACATCGGAACCCAGAATTATAATGTAATAGATAATTTTGTAATAT
* **
23353 AATCGGTATAAATATACTTGTTTTATGAGCGAATAGGTCTACAACCTATATCG
131 AACCGGTATAAATATACCGGTTTTATGAGCGAATAGGTCTACAACCTATATCG
*
23406 ACACTTTTTAATATTGTGTCGGTACTTTATGTCCAGATTGGAAGAAAAATGTGTCGATACCTTGT
1 ACACTTTTTAATATTGTGTCGGTACTTTATGTCCAGAATGGAAGAAAAATGTGTCGATACCTTGT
*
23471 CAAAAAGTGTCGACATTTACACATCGGAACCCAGAATTATAATGTAATAGAAAATTTTGTAATAT
66 CAAAAAGTGTCGACATTTACACATCGGAACCCAGAATTATAATGTAATAGATAATTTTGTAATAT
*
23536 AACCGGTATAAATATACCGGTTTTATGAGCGAATAGGTATACAACCTATATCG
131 AACCGGTATAAATATACCGGTTTTATGAGCGAATAGGTCTACAACCTATATCG
* *
23589 ACACTTTTTAATATTGTGTTGGTACTTTATCTCCAGAATGGAAGAAAAATGTGTCGATACCTTGT
1 ACACTTTTTAATATTGTGTCGGTACTTTATGTCCAGAATGGAAGAAAAATGTGTCGATACCTTGT
* * *
23654 CAAAAAGTGTCGACATTTACACATCGGAACCCAGAATTATAATATAATACATAATTTTGTAATAA
66 CAAAAAGTGTCGACATTTACACATCGGAACCCAGAATTATAATGTAATAGATAATTTTGTAATAT
23719 AACCGGTATAAATATACCGGTTTTATGAGCGAATAGGTCTACAACCTATATCG
131 AACCGGTATAAATATACCGGTTTTATGAGCGAATAGGTCTACAACCTATATCG
23772 ACACTTTTTAATATTGTGTCGGTACTTTA
1 ACACTTTTTAATATTGTGTCGGTACTTTA
23801 CAATAGGAGT
Statistics
Matches: 377, Mismatches: 18, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
183 377 1.00
ACGTcount: A:0.35, C:0.15, G:0.16, T:0.34
Consensus pattern (183 bp):
ACACTTTTTAATATTGTGTCGGTACTTTATGTCCAGAATGGAAGAAAAATGTGTCGATACCTTGT
CAAAAAGTGTCGACATTTACACATCGGAACCCAGAATTATAATGTAATAGATAATTTTGTAATAT
AACCGGTATAAATATACCGGTTTTATGAGCGAATAGGTCTACAACCTATATCG
Found at i:26626 original size:23 final size:23
Alignment explanation
Indices: 26595--26657 Score: 99
Period size: 23 Copynumber: 2.7 Consensus size: 23
26585 ATAGGTAAAA
*
26595 ATATGATGTAATAGGTAACGTTT
1 ATATAATGTAATAGGTAACGTTT
*
26618 ATATAATGTAATAGGTAGCGTTT
1 ATATAATGTAATAGGTAACGTTT
*
26641 ATATAATATAATAGGTA
1 ATATAATGTAATAGGTA
26658 GTGCTTATAT
Statistics
Matches: 37, Mismatches: 3, Indels: 0
0.93 0.08 0.00
Matches are distributed among these distances:
23 37 1.00
ACGTcount: A:0.40, C:0.03, G:0.19, T:0.38
Consensus pattern (23 bp):
ATATAATGTAATAGGTAACGTTT
Found at i:26658 original size:23 final size:23
Alignment explanation
Indices: 26603--26667 Score: 94
Period size: 23 Copynumber: 2.8 Consensus size: 23
26593 AAATATGATG
* *
26603 TAATAGGTAACGTTTATATAATG
1 TAATAGGTAGCGTTTATATAATA
26626 TAATAGGTAGCGTTTATATAATA
1 TAATAGGTAGCGTTTATATAATA
* *
26649 TAATAGGTAGTGCTTATAT
1 TAATAGGTAGCGTTTATAT
26668 TGTAAGTTAT
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
23 38 1.00
ACGTcount: A:0.37, C:0.05, G:0.18, T:0.40
Consensus pattern (23 bp):
TAATAGGTAGCGTTTATATAATA
Found at i:27095 original size:23 final size:23
Alignment explanation
Indices: 27032--27104 Score: 101
Period size: 23 Copynumber: 3.2 Consensus size: 23
27022 ATAGGTAAAA
* * **
27032 ATATGATGTAATAGGTAACACTT
1 ATATAATGTAATAGGTAGCGTTT
27055 ATATAATGTAATAGGTAGCGTTT
1 ATATAATGTAATAGGTAGCGTTT
*
27078 ATATAATGTAATAGGTAGTGTTT
1 ATATAATGTAATAGGTAGCGTTT
27101 ATAT
1 ATAT
27105 TGTAAAGTAT
Statistics
Matches: 45, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
23 45 1.00
ACGTcount: A:0.37, C:0.04, G:0.19, T:0.40
Consensus pattern (23 bp):
ATATAATGTAATAGGTAGCGTTT
Found at i:27184 original size:437 final size:438
Alignment explanation
Indices: 26333--27210 Score: 1577
Period size: 437 Copynumber: 2.0 Consensus size: 438
26323 ATATTATTAT
26333 TAAATTAAAAACAATAAACATATATATTACATATTTATTATTATCTTTGGTTAATATTGTTAAAT
1 TAAATTAAAAACAATAAACATATATATTACATATTTATTATTATCTTTGGTTAATATTGTTAAAT
26398 TTAAATTCTAAATATTATTTTATAAAATATCAAAACAATCAAATAATTTTTTGTGCAAATGAAAT
66 TTAAATTCTAAATATTATTTTATAAAATATCAAAACAATCAAATAATTTTTTGTGCAAATGAAAT
*
26463 TATTAAATTAATATTGTAGGTGGAAAACATGAAACACTATTAAAAAAAATTGAAACATAAATTAT
131 TATTAAATTAATATTGTAGGTGGAAAACATGAAACACTATTAAAAAAAATTGAAACATAAATTAC
*
26528 ATAACTTTAAAAAAAGTATCGATCATTTTTATAAAAAGTATGGACACTTTCAATATAATAGGTAA
196 ATAACTTTAAAAAAAATATCGATCATTTTTATAAAAAGTATGGACACTTTCAATATAATAGGTAA
**
26593 AAATATGATGTAATAGGTAACGTTTATATAATGTAATAGGTAGCGTTTATATAATATAATAGGTA
261 AAATATGATGTAATAGGTAACACTTATATAATGTAATAGGTAGCGTTTATATAATATAATAGGTA
* *
26658 GTGCTTATATTGTAAGTTATCTATACTTTTTATAAAAGTGTCCATACTTTTTTCACTGTGGAAAA
326 GTGCTTATATTGTAAGTTATCTATACTTTTTATAAAAGTGTACATACTTATTTCACTGTGGAAAA
* * *
26723 CATTAATTTAAGGTTATCTTTTGAGTGAGTTTTAAGATATTAATTTAG
391 CATTAATTTAAGGTTATATTTTGAGTGAGTTTTAAAATATCAATTTAG
*
26771 TAAATTAAAAACCATAAACATATATATTACATA-TTATTATTATCTTTGGTTAATATTGTTAAAT
1 TAAATTAAAAACAATAAACATATATATTACATATTTATTATTATCTTTGGTTAATATTGTTAAAT
26835 TTAAATTCTAAATATTATTTTATAAAATATCAAAACAATCAAATAATTTTTTGTGCAAATGAAAT
66 TTAAATTCTAAATATTATTTTATAAAATATCAAAACAATCAAATAATTTTTTGTGCAAATGAAAT
26900 TATTAAATTAATATTGTTA-GTGGAAAACATGAAACACTATTAAAAAAAATTGAAACATAAATTA
131 TATTAAATTAATATTG-TAGGTGGAAAACATGAAACACTATTAAAAAAAATTGAAACATAAATTA
26964 CATAACTTTAAAAAAAATATCGATTC-TTTTTATAAAAAGTATGGACACTTTCAATATAATAGGT
195 CATAACTTTAAAAAAAATATCGA-TCATTTTTATAAAAAGTATGGACACTTTCAATATAATAGGT
*
27028 AAAAATATGATGTAATAGGTAACACTTATATAATGTAATAGGTAGCGTTTATATAATGTAATAGG
259 AAAAATATGATGTAATAGGTAACACTTATATAATGTAATAGGTAGCGTTTATATAATATAATAGG
*
27093 TAGTGTTTATATTGTAAAG-TATCTAT-CATTTTTATAAAAGTGTACATACTTATTTCACTGTGG
324 TAGTGCTTATATTGT-AAGTTATCTATAC-TTTTTATAAAAGTGTACATACTTATTTCACTGTGG
27156 AAAACATTAATTTAAGGTTATATTTTGAGTGAGTTTTAAAATATCAATTTAG
387 AAAACATTAATTTAAGGTTATATTTTGAGTGAGTTTTAAAATATCAATTTAG
27208 TAA
1 TAA
27211 TTATATGTAT
Statistics
Matches: 424, Mismatches: 12, Indels: 9
0.95 0.03 0.02
Matches are distributed among these distances:
436 1 0.00
437 384 0.91
438 39 0.09
ACGTcount: A:0.43, C:0.07, G:0.11, T:0.39
Consensus pattern (438 bp):
TAAATTAAAAACAATAAACATATATATTACATATTTATTATTATCTTTGGTTAATATTGTTAAAT
TTAAATTCTAAATATTATTTTATAAAATATCAAAACAATCAAATAATTTTTTGTGCAAATGAAAT
TATTAAATTAATATTGTAGGTGGAAAACATGAAACACTATTAAAAAAAATTGAAACATAAATTAC
ATAACTTTAAAAAAAATATCGATCATTTTTATAAAAAGTATGGACACTTTCAATATAATAGGTAA
AAATATGATGTAATAGGTAACACTTATATAATGTAATAGGTAGCGTTTATATAATATAATAGGTA
GTGCTTATATTGTAAGTTATCTATACTTTTTATAAAAGTGTACATACTTATTTCACTGTGGAAAA
CATTAATTTAAGGTTATATTTTGAGTGAGTTTTAAAATATCAATTTAG
Found at i:30167 original size:12 final size:13
Alignment explanation
Indices: 30146--30183 Score: 51
Period size: 12 Copynumber: 2.9 Consensus size: 13
30136 ATATTCAAAT
30146 GAAAATATTTATA
1 GAAAATATTTATA
*
30159 TAAAA-ATTTATA
1 GAAAATATTTATA
30171 GAAAATATATTAT
1 GAAAATAT-TTAT
30184 TTTATTATTT
Statistics
Matches: 21, Mismatches: 2, Indels: 3
0.81 0.08 0.12
Matches are distributed among these distances:
12 11 0.52
13 6 0.29
14 4 0.19
ACGTcount: A:0.55, C:0.00, G:0.05, T:0.39
Consensus pattern (13 bp):
GAAAATATTTATA
Found at i:35870 original size:18 final size:18
Alignment explanation
Indices: 35847--35886 Score: 71
Period size: 18 Copynumber: 2.2 Consensus size: 18
35837 AGATGTGTTC
35847 GCTCATCATCAAACCAGG
1 GCTCATCATCAAACCAGG
*
35865 GCTCATCATCAAGCCAGG
1 GCTCATCATCAAACCAGG
35883 GCTC
1 GCTC
35887 TAGCCTTGGC
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 21 1.00
ACGTcount: A:0.28, C:0.35, G:0.20, T:0.17
Consensus pattern (18 bp):
GCTCATCATCAAACCAGG
Found at i:36894 original size:80 final size:80
Alignment explanation
Indices: 36380--37860 Score: 1390
Period size: 81 Copynumber: 18.5 Consensus size: 80
36370 AAGGAGGCCA
* * * *
36380 AAAAAGAAGGTTCA--AGAG-CAGCTTCT-AAAATGAACCAACAA-AATCGTCTTTGGAGCGTCA
1 AAAAAGAAGGTTCATCAGCGCCAGCTTCTCAAGA-GAACCAACAACAATCGTCTTCGGAGCCTCA
* * *
36440 GCAAGACAAAGATACC
65 GCAAGACGAGGATTCC
* ** * * * * *
36456 AAAAAGAAGGTTCATCAGTGCCAATTTCTCAAGAGAACCAACAGCAATCATTTTCAGAGGCTCAG
1 AAAAAGAAGGTTCATCAGCGCCAGCTTCTCAAGAGAACCAACAACAATCGTCTTCGGAGCCTCAG
*
36521 CAAGACAAGGATTCC
66 CAAGACGAGGATTCC
* * * * * *
36536 ATTAAAGAAGGTTCATCAGCACCAGCTTCTGAAGAGAACCAACAACAATTGTCTTCAGAGTCTCA
1 A-AAAAGAAGGTTCATCAGCGCCAGCTTCTCAAGAGAACCAACAACAATCGTCTTCGGAGCCTCA
* *
36601 GCAAAACAAGGATTCC
65 GCAAGACGAGGATTCC
* * * *
36617 AAGAAAGAAGGTTCATCAGAGCCAACTTCTGAAGAGAACCAAAAACAATCGTCTTCGGAGCCTCA
1 AA-AAAGAAGGTTCATCAGCGCCAGCTTCTCAAGAGAACCAACAACAATCGTCTTCGGAGCCTCA
*
36682 GCAAGACGAGGATTCTG
65 GCAAGACGAGGATTC-C
* ** * * * * *
36699 GAAAAGAAGGTTCATCAGTTCCAGTTTCTCAAGAGAACCAACAGCAGTTGTCTTCTGAGCCTCAG
1 AAAAAGAAGGTTCATCAGCGCCAGCTTCTCAAGAGAACCAACAACAATCGTCTTCGGAGCCTCAG
*
36764 CAAGACGAGGATTCTGG
66 CAAGACGAGGATTC--C
* * * *
36781 AAAAAAAAGGTTCATCAACGCCAGCTTCTCAAGAGAACCAACAGCAATCGTCTTCAG-GCCTCAG
1 AAAAAGAAGGTTCATCAGCGCCAGCTTCTCAAGAGAACCAACAACAATCGTCTTCGGAGCCTCAG
**
36845 CAAGGTGAGGATTCC
66 CAAGACGAGGATTCC
*
36860 AAAAATGAAGGTTCATCAGCGCCAGCTTCTCAAGAGAACCAACAACAATCATCTTCGGAGCCTCA
1 AAAAA-GAAGGTTCATCAGCGCCAGCTTCTCAAGAGAACCAACAACAATCGTCTTCGGAGCCTCA
*
36925 ACAAGACGAGGATTCC
65 GCAAGACGAGGATTCC
* * * * * *
36941 GAAAAGGAAGGATCATCAGCACCAGCCTCTCAAGAGAACCAACAACAATCATCTTCAGAGCCTCA
1 -AAAAAGAAGGTTCATCAGCGCCAGCTTCTCAAGAGAACCAACAACAATCGTCTTCGGAGCCTCA
* * *
37006 ACTAGATGA-GATTCC
65 GCAAGACGAGGATTCC
* * * * ** *
37021 GAAAAGGAAGGATT-ATTAGAGCCAGCTTCTCAAGAGAACCAA-ATGCAATTTTCTTCAGAGCCT
1 -AAAAAGAAGG-TTCATCAGCGCCAGCTTCTCAAGAGAACCAACA-ACAATCGTCTTCGGAGCCT
*
37084 CAACAAG-CGAGGATTCC
63 CAGCAAGACGAGGATTCC
* * * * * * *
37101 GAAAAGGAAAGTTCATCAGCACCAGCTTGTCAATATAACCAACAACAATCGTCTTGGGAGCCTCA
1 -AAAAAGAAGGTTCATCAGCGCCAGCTTCTCAAGAGAACCAACAACAATCGTCTTCGGAGCCTCA
37166 GCAAGACGAGGATTCC
65 GCAAGACGAGGATTCC
* * * * *
37182 AAAAGGAAGGATCATTAGAGCCAGCTTCTCAAGAGAA-CAA-AATGCAATTGTCTTCGGAGCCTC
1 AAAAAGAAGGTTCATCAGCGCCAGCTTCTCAAGAGAACCAACAA--CAATCGTCTTCGGAGCCTC
*
37245 AGC-A-A-GATGATTCC
64 AGCAAGACGAGGATTCC
* * * * *
37259 GAAAAGGGAA-GTGCATCAGTGCCAGCTTCTCAAGAGAACCAACAAC-ATCATCTTCGAAGCCTC
1 -AAAA-AGAAGGTTCATCAGCGCCAGCTTCTCAAGAGAACCAACAACAATCGTCTTCGGAGCCTC
* * *
37322 AACAAGATGAGGATTTCG
64 AGCAAGACGAGGA-TTCC
* * * * * * *
37340 AAAAGGAAGGATCATTAGAGCCAGCTTCTCAAGAGAACCAA-ATGCAATTGTTTTCGGAGCCTCA
1 AAAAAGAAGGTTCATCAGCGCCAGCTTCTCAAGAGAACCAACA-ACAATCGTCTTCGGAGCCTCA
* ** *
37404 GCAAGATGACAATTCTG
65 GCAAGACGAGGATTC-C
* *
37421 AAAAGGAAGGTT-ATCAGCGCCAGCTTCTCAAGAGAACCAACAACAATCATCTTCGGAGCCTCAG
1 AAAAAGAAGGTTCATCAGCGCCAGCTTCTCAAGAGAACCAACAACAATCGTCTTCGGAGCCTCAG
* *
37485 CAAGA--TGGATTCTG
66 CAAGACGAGGATTC-C
* * * * * * * * *
37499 AAAAGGAAGGATCATTAGAGCCAGCTTCTCACGAGAACCAGCAACAA-CGTCTTTGGAGCATCAC
1 AAAAAGAAGGTTCATCAGCGCCAGCTTCTCAAGAGAACCAACAACAATCGTCTTCGGAGCCTCAG
* * *
37563 CAAGGCAATGATTCC
66 CAAGACGAGGATTCC
* * *
37578 AAGAAAGAAGGTTCATCAGCGCTAGC-TCTCAAGAGAACCAACCAACAATTGTCTTCGGAGCCTG
1 AA-AAAGAAGGTTCATCAGCGCCAGCTTCTCAAGAGAACCAA-CAACAATCGTCTTCGGAGCCTC
37642 AGCAAGACGAGGATTCC
64 AGCAAGACGAGGATTCC
* * * * * * *
37659 AAATAGAAGGTTCACCAGCACCATCTTCTCAAGAGAACCAACAGCAATCGTCTTCGGAACGTCAG
1 AAAAAGAAGGTTCATCAGCGCCAGCTTCTCAAGAGAACCAACAACAATCGTCTTCGGAGCCTCAG
* *
37724 CTAGACAAGGATTCC
66 CAAGACGAGGATTCC
* * *
37739 AAGAAAGAAGGTTCATCAGCGCCAGCTTCTCAAGAGAACCAACATCAATTGTCTTCAGAGCCTCA
1 AA-AAAGAAGGTTCATCAGCGCCAGCTTCTCAAGAGAACCAACAACAATCGTCTTCGGAGCCTCA
37804 GCAAGACGAGGA-TCC
65 GCAAGACGAGGATTCC
** * ** * *
37819 AAAAAGAAGACTCAACAATGCTAGCTTCTCAAGAGAAACAAC
1 AAAAAGAAGGTTCATCAGCGCCAGCTTCTCAAGAGAACCAAC
37861 TGTCTTCAGA
Statistics
Matches: 1165, Mismatches: 199, Indels: 79
0.81 0.14 0.05
Matches are distributed among these distances:
76 14 0.01
77 24 0.02
78 70 0.06
79 120 0.10
80 425 0.36
81 458 0.39
82 54 0.05
ACGTcount: A:0.37, C:0.24, G:0.21, T:0.19
Consensus pattern (80 bp):
AAAAAGAAGGTTCATCAGCGCCAGCTTCTCAAGAGAACCAACAACAATCGTCTTCGGAGCCTCAG
CAAGACGAGGATTCC
Found at i:37809 original size:161 final size:160
Alignment explanation
Indices: 36380--37860 Score: 1411
Period size: 161 Copynumber: 9.3 Consensus size: 160
36370 AAGGAGGCCA
* * * * * *
36380 AAAAAGAAGGTTCA--AGAG-CAGCTTCT-AAAATGAACCAACA-AAATCGTCTTTGGAGCGTCA
1 AAAAGGAAGGTTCATCAGAGCCAGCTTCTCAAGA-GAACCAACAGCAATTGTCTTCGGAGCCTCA
* * * * ** *
36440 GCAAGACAAAGATACCAAAAAGAAGGTTCATCAGTGCCAATTTCTCAAGAGAACCAACAGCAATC
65 GCAAGACGAGGATTCCAAAAAGAAGGTTCATCAGCGCCAGCTTCTCAAGAGAACCAACAACAATC
* * * *
36505 ATTTTCAGAGGCTCAGCAAGACAAGGATTCC
130 GTCTTCAGAGCCTCAGCAAGACGAGGATTCC
* * * *
36536 ATTAAA-GAAGGTTCATCAGCA-CCAGCTTCTGAAGAGAACCAACAACAATTGTCTTCAGAGTCT
1 A--AAAGGAAGGTTCATCAG-AGCCAGCTTCTCAAGAGAACCAACAGCAATTGTCTTCGGAGCCT
* * * * * *
36599 CAGCAAAACAAGGATTCCAAGAAAGAAGGTTCATCAGAGCCAACTTCTGAAGAGAACCAAAAACA
63 CAGCAAGACGAGGATTCCAA-AAAGAAGGTTCATCAGCGCCAGCTTCTCAAGAGAACCAACAACA
* *
36664 ATCGTCTTCGGAGCCTCAGCAAGACGAGGATTCTGG
127 ATCGTCTTCAGAGCCTCAGCAAGACGAGGATTC--C
** * * *
36700 AAAA-GAAGGTTCATCAGTTCCAGTTTCTCAAGAGAACCAACAGCAGTTGTCTTCTGAGCCTCAG
1 AAAAGGAAGGTTCATCAGAGCCAGCTTCTCAAGAGAACCAACAGCAATTGTCTTCGGAGCCTCAG
* * * *
36764 CAAGACGAGGATTCTGGAAAAAAAAGGTTCATCAACGCCAGCTTCTCAAGAGAACCAACAGCAAT
66 CAAGACGAGGATTC--CAAAAAGAAGGTTCATCAGCGCCAGCTTCTCAAGAGAACCAACAACAAT
**
36829 CGTCTTCAG-GCCTCAGCAAGGTGAGGATTCC
129 CGTCTTCAGAGCCTCAGCAAGACGAGGATTCC
* * * **
36860 AAAAATGAAGGTTCATCAGCGCCAGCTTCTCAAGAGAACCAACAACAATCATCTTCGGAGCCTCA
1 -AAAAGGAAGGTTCATCAGAGCCAGCTTCTCAAGAGAACCAACAGCAATTGTCTTCGGAGCCTCA
* * * * *
36925 ACAAGACGAGGATTCCGAAAAGGAAGGATCATCAGCACCAGCCTCTCAAGAGAACCAACAACAAT
65 GCAAGACGAGGATTCC-AAAAAGAAGGTTCATCAGCGCCAGCTTCTCAAGAGAACCAACAACAAT
* * * *
36990 CATCTTCAGAGCCTCAACTAGATGA-GATTCC
129 CGTCTTCAGAGCCTCAGCAAGACGAGGATTCC
* * *
37021 GAAAAGGAAGGATT-ATTAGAGCCAGCTTCTCAAGAGAACCAA-ATGCAATTTTCTTCAGAGCCT
1 -AAAAGGAAGG-TTCATCAGAGCCAGCTTCTCAAGAGAACCAACA-GCAATTGTCTTCGGAGCCT
* * * * * * *
37084 CAACAAG-CGAGGATTCCGAAAAGGAAAGTTCATCAGCACCAGCTTGTCAATATAACCAACAACA
63 CAGCAAGACGAGGATTCC-AAAAAGAAGGTTCATCAGCGCCAGCTTCTCAAGAGAACCAACAACA
**
37148 ATCGTCTTGGGAGCCTCAGCAAGACGAGGATTCC
127 ATCGTCTTCAGAGCCTCAGCAAGACGAGGATTCC
* * *
37182 AAAAGGAAGGATCATTAGAGCCAGCTTCTCAAGAGAA-CAAAATGCAATTGTCTTCGGAGCCTCA
1 AAAAGGAAGGTTCATCAGAGCCAGCTTCTCAAGAGAACCAACA-GCAATTGTCTTCGGAGCCTCA
* * * *
37246 GC-A-A-GATGATTCCGAAAAGGGAA-GTGCATCAGTGCCAGCTTCTCAAGAGAACCAACAAC-A
65 GCAAGACGAGGATTCC-AAAA-AGAAGGTTCATCAGCGCCAGCTTCTCAAGAGAACCAACAACAA
* * * *
37306 TCATCTTC-GAAGCCTCAACAAGATGAGGATTTCG
128 TCGTCTTCAG-AGCCTCAGCAAGACGAGGA-TTCC
* * *
37340 AAAAGGAAGGATCATTAGAGCCAGCTTCTCAAGAGAACCAA-ATGCAATTGTTTTCGGAGCCTCA
1 AAAAGGAAGGTTCATCAGAGCCAGCTTCTCAAGAGAACCAACA-GCAATTGTCTTCGGAGCCTCA
* ** * *
37404 GCAAGATGACAATTCTGAAAAGGAAGGTT-ATCAGCGCCAGCTTCTCAAGAGAACCAACAACAAT
65 GCAAGACGAGGATTC-CAAAAAGAAGGTTCATCAGCGCCAGCTTCTCAAGAGAACCAACAACAAT
* * * *
37468 CATCTTCGGAGCCTCAGCAAGA--TGGATTCTG
129 CGTCTTCAGAGCCTCAGCAAGACGAGGATTC-C
* * * * * * * * *
37499 AAAAGGAAGGATCATTAGAGCCAGCTTCTCACGAGAACCAGCAACAA-CGTCTTTGGAGCATCAC
1 AAAAGGAAGGTTCATCAGAGCCAGCTTCTCAAGAGAACCAACAGCAATTGTCTTCGGAGCCTCAG
* * * *
37563 CAAGGCAATGATTCCAAGAAAGAAGGTTCATCAGCGCTAGC-TCTCAAGAGAACCAACCAACAAT
66 CAAGACGAGGATTCCAA-AAAGAAGGTTCATCAGCGCCAGCTTCTCAAGAGAACCAA-CAACAAT
* * *
37627 TGTCTTCGGAGCCTGAGCAAGACGAGGATTCC
129 CGTCTTCAGAGCCTCAGCAAGACGAGGATTCC
* * * * *
37659 AAATA-GAAGGTTCACCAGCA-CCATCTTCTCAAGAGAACCAACAGCAATCGTCTTCGGAACGTC
1 AAA-AGGAAGGTTCATCAG-AGCCAGCTTCTCAAGAGAACCAACAGCAATTGTCTTCGGAGCCTC
* * *
37722 AGCTAGACAAGGATTCCAAGAAAGAAGGTTCATCAGCGCCAGCTTCTCAAGAGAACCAACATCAA
64 AGCAAGACGAGGATTCCAA-AAAGAAGGTTCATCAGCGCCAGCTTCTCAAGAGAACCAACAACAA
*
37787 TTGTCTTCAGAGCCTCAGCAAGACGAGGA-TCC
128 TCGTCTTCAGAGCCTCAGCAAGACGAGGATTCC
* ** * * *
37819 AAAAAGAAGACTCAACA-ATGCTAGCTTCTCAAGAGAAACAAC
1 AAAAGGAAGGTTCATCAGA-GCCAGCTTCTCAAGAGAACCAAC
37861 TGTCTTCAGA
Statistics
Matches: 1124, Mismatches: 152, Indels: 94
0.82 0.11 0.07
Matches are distributed among these distances:
156 2 0.00
157 35 0.03
158 159 0.14
159 99 0.09
160 254 0.23
161 277 0.25
162 248 0.22
163 47 0.04
164 3 0.00
ACGTcount: A:0.37, C:0.24, G:0.21, T:0.19
Consensus pattern (160 bp):
AAAAGGAAGGTTCATCAGAGCCAGCTTCTCAAGAGAACCAACAGCAATTGTCTTCGGAGCCTCAG
CAAGACGAGGATTCCAAAAAGAAGGTTCATCAGCGCCAGCTTCTCAAGAGAACCAACAACAATCG
TCTTCAGAGCCTCAGCAAGACGAGGATTCC
Done.