Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01005512.1 Hibiscus syriacus cultivar Beakdansim tig00012724_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  77360

Tables:   1   

This is table  1  of  1  ( 53 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3752--3798
21
2.2
22
84
3
60
27
23
23
25
2.00
3752--3831
23
3.6
23
72
14
78
27
23
23
25
2.00
3750--3849
44
2.3
41
73
15
94
28
25
24
23
2.00
5383--5426
21
2.1
21
83
8
54
11
40
13
34
1.81
6552--6600
19
2.6
19
84
9
57
24
28
20
26
1.99
8737--8800
21
3.0
21
81
4
83
71
10
0
17
1.13
8751--8785
16
2.1
17
89
5
54
68
8
0
22
1.16
8966--9028
31
2.0
31
90
0
99
47
20
3
28
1.65
8883--9063
82
2.2
83
90
1
292
51
18
2
27
1.60
9137--9203
14
4.9
14
73
8
66
76
7
2
13
1.12
9136--9313
74
2.4
74
78
11
186
73
6
5
15
1.22
9214--9254
17
2.4
17
87
4
55
78
9
7
4
1.10
9212--9312
24
4.1
24
70
9
78
73
5
5
14
1.22
10125--10216
7
12.9
7
72
15
55
75
7
0
17
1.03
10125--10211
14
6.6
14
70
17
71
75
8
0
16
1.02
10104--10195
39
2.4
40
81
15
97
72
9
3
14
1.22
10125--10213
13
6.8
13
75
20
80
75
7
0
16
1.03
11222--11259
2
19.0
2
100
0
76
50
0
0
50
1.00
11321--11602
2
136.5
2
66
22
95
43
5
4
45
1.49
11325--11383
5
12.8
5
96
1
74
44
10
0
45
1.37
11429--11489
31
1.9
31
86
6
86
39
4
9
45
1.59
11475--11585
33
3.6
32
71
16
108
45
3
4
46
1.40
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
11476--11617
59
2.4
59
84
9
182
45
2
4
47
1.39
11572--11668
42
2.3
42
85
5
126
41
1
6
51
1.34
11519--11680
61
2.7
60
80
12
149
42
1
6
49
1.38
11501--11674
72
2.3
77
81
13
191
43
2
5
48
1.39
11426--11668
11
22.4
11
66
20
84
42
3
6
47
1.44
25117--25168
26
2.0
26
96
0
95
51
19
17
11
1.75
26562--26608
20
2.4
19
82
10
58
38
0
0
61
0.96
36440--36486
21
2.2
21
84
0
67
19
27
17
36
1.93
36482--36668
20
9.4
20
89
3
254
34
24
20
20
1.97
40111--40268
19
8.7
19
70
15
102
44
18
22
14
1.85
40171--40264
33
2.8
33
91
0
152
45
18
23
12
1.83
40274--40342
33
2.1
33
86
0
93
11
20
21
46
1.82
41812--41878
21
3.2
21
72
4
64
20
19
35
23
1.95
42359--42448
33
2.7
33
94
0
153
45
21
22
11
1.82
42331--42451
19
6.8
19
68
19
82
45
20
21
12
1.84
42448--42488
19
2.2
19
90
0
64
9
17
31
41
1.82
42457--42494
19
2.0
19
94
0
67
2
18
31
47
1.62
42490--42547
19
2.9
20
76
7
64
12
17
18
51
1.75
42611--42896
94
3.1
92
88
3
421
47
18
11
22
1.80
44570--44631
20
3.2
20
81
4
90
46
17
22
12
1.82
44568--44679
19
6.1
19
76
15
119
45
20
22
11
1.83
44568--44657
33
2.5
36
86
13
116
45
21
22
11
1.82
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
44706--44777
20
3.5
20
84
5
92
13
16
18
51
1.77
45335--45548
20
10.6
20
78
6
234
18
18
25
37
1.94
45337--45548
41
5.2
41
91
1
338
18
18
25
37
1.93
45921--45994
30
2.4
30
79
2
85
28
8
4
59
1.44
70293--70371
35
2.3
33
80
18
90
31
3
3
60
1.32
73284--73324
16
2.6
16
92
0
64
36
26
17
19
1.94
73289--73330
16
2.7
15
89
7
50
40
26
16
16
1.90
73572--73671
42
2.4
42
91
0
155
25
45
12
18
1.83
74480--74531
19
2.7
19
93
0
86
32
28
17
21
1.96

Tables:   1

The End!