genome.fa.s5516.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01005516.1 Hibiscus syriacus cultivar Beakdansim tig00012742_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  117231

Tables:   1   

This is table  1  of  1  ( 71 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
246--287	17	2.4	18	80	7	52	38	9	19	33	1.84
355--422	30	2.3	29	89	2	100	45	20	4	29	1.70
8539--8690	40	3.7	40	65	5	106	23	26	19	29	1.98
8546--8738	83	2.3	83	90	0	296	24	28	17	29	1.97
16247--16278	2	16.5	2	93	6	57	46	0	0	53	1.00
17620--17675	20	2.8	20	86	0	76	33	7	21	37	1.81
17717--17757	20	2.0	20	90	0	64	34	9	19	36	1.85
17976--18009	17	2.0	17	100	0	68	52	23	17	5	1.66
22143--22250	3	36.0	3	80	10	114	60	0	3	35	1.21
22168--22276	15	7.3	14	78	9	83	56	0	1	41	1.10
23024--23068	19	2.3	20	88	3	65	37	6	17	37	1.76
23024--23088	20	3.3	20	84	2	78	38	6	18	36	1.76
24427--24892	66	7.2	66	80	9	503	30	17	13	39	1.88
24409--24837	133	3.3	131	85	5	502	28	17	13	39	1.88
25041--25958	139	6.6	139	82	2	958	30	27	15	25	1.96
25041--25898	416	2.1	417	84	3	1127	30	28	15	25	1.96
26224--26288	3	21.7	3	100	0	130	32	0	0	67	0.91
27341--27949	305	2.0	303	94	0	1065	22	13	17	46	1.83
28433--28491	6	9.5	6	76	20	59	18	1	1	77	0.93
29929--30171	120	2.0	120	99	0	477	41	15	18	24	1.89
34086--34118	16	2.1	16	94	0	57	57	0	0	42	0.98
34093--34154	24	2.6	23	84	7	70	62	1	0	35	1.05
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40221--40245	12	2.1	12	100	0	50	60	0	8	32	1.26
40560--40653	20	4.7	20	69	10	57	45	14	11	27	1.80
41578--41631	21	2.6	21	82	8	67	57	11	7	24	1.58
41557--41631	20	3.7	20	73	3	60	52	13	8	26	1.68
41618--42179	197	2.8	197	79	6	584	41	12	15	30	1.84
44235--44270	12	3.0	12	87	0	54	52	2	38	5	1.39
51668--51735	22	3.3	22	65	23	65	20	11	10	57	1.63
51667--51735	21	3.3	21	64	24	56	21	11	10	56	1.64
62578--62630	3	18.0	3	96	3	99	67	0	0	32	0.91
63990--64070	38	2.1	39	95	4	148	33	7	7	51	1.58
63998--64061	18	3.2	21	63	14	55	34	6	7	51	1.56
65858--65893	18	2.0	18	100	0	72	38	11	27	22	1.88
68836--69007	38	4.5	39	79	6	208	36	12	21	30	1.90
68836--69004	76	2.2	77	89	1	259	35	12	21	30	1.90
70120--70355	43	5.3	43	66	15	129	31	17	24	26	1.97
70154--70312	47	3.5	47	69	10	157	28	17	23	30	1.97
70102--70366	90	2.9	90	90	0	422	30	18	23	27	1.98
70381--70669	36	7.9	36	83	4	301	42	16	20	20	1.89
70383--70701	108	2.9	107	83	6	345	43	16	19	20	1.88
73778--73823	24	1.9	24	91	8	76	60	13	4	21	1.49
73783--73822	12	3.2	13	77	22	50	60	12	5	22	1.52
79186--79220	2	17.5	2	100	0	70	51	0	0	48	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
82461--82490	15	1.9	16	93	6	53	63	0	0	36	0.95
82802--82859	30	1.9	30	82	6	73	48	1	0	50	1.11
84212--84248	17	2.1	18	90	5	58	45	2	0	51	1.15
86833--86932	38	2.5	40	85	6	134	26	27	22	25	2.00
86835--86930	20	4.9	20	81	10	126	25	28	22	23	2.00
88355--88406	19	2.7	19	96	0	95	21	28	17	32	1.96
91799--92376	4	145.5	4	96	1	1065	48	24	1	25	1.57
92768--92838	20	3.5	20	94	0	115	28	21	23	26	1.99
92747--92876	38	3.3	38	76	14	113	28	25	21	24	1.99
92767--92885	40	3.0	40	79	9	109	27	25	21	26	1.99
92986--93023	19	2.0	20	84	5	51	34	26	5	34	1.79
92960--93033	31	2.3	31	95	4	130	32	27	5	35	1.79
93461--93500	2	20.0	2	100	0	80	50	0	0	50	1.00
93899--93930	2	16.0	2	100	0	64	50	0	0	50	1.00
95209--95327	3	40.0	3	75	11	111	63	2	0	33	1.08
95303--95351	25	2.0	26	88	8	75	73	4	2	20	1.10
95666--96481	122	6.7	122	90	2	1255	27	19	15	38	1.91
96876--96949	22	3.4	22	94	3	123	35	12	17	35	1.87
98539--98690	77	2.0	77	85	5	209	30	24	15	28	1.96
106783--106819	17	2.1	18	90	5	58	45	2	0	51	1.15
107212--107239	13	2.2	13	100	0	56	78	0	0	21	0.75
108550--108627	3	25.0	3	77	12	61	66	1	0	32	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
108603--108651	25	2.0	26	88	8	75	73	4	2	20	1.10
108674--108748	25	3.0	25	90	0	123	29	20	13	37	1.90
112314--112498	74	2.5	76	84	6	247	29	29	20	21	1.98
112457--112496	19	2.1	19	90	9	64	30	37	17	15	1.90
115385--115415	16	1.9	16	93	0	53	51	9	12	25	1.70

Tables:   1

The End!